Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04911

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04910 and MPMX19_04911 are separated by 70 nucleotidesMPMX19_04911 and MPMX19_04912 are separated by 214 nucleotides MPMX19_04910: MPMX19_04910 - hypothetical protein, at 364,324 to 366,099 _04910 MPMX19_04911: MPMX19_04911 - hypothetical protein, at 366,170 to 368,194 _04911 MPMX19_04912: MPMX19_04912 - hypothetical protein, at 368,409 to 369,512 _04912 Position (kb) 366 367 368 369Strain fitness (log2 ratio) -2 -1 0 1 2at 365.330 kb on + strand, within MPMX19_04910at 365.330 kb on + strand, within MPMX19_04910at 365.330 kb on + strand, within MPMX19_04910at 365.330 kb on + strand, within MPMX19_04910at 365.330 kb on + strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.339 kb on + strand, within MPMX19_04910at 365.453 kb on + strand, within MPMX19_04910at 365.453 kb on + strand, within MPMX19_04910at 365.453 kb on + strand, within MPMX19_04910at 365.453 kb on + strand, within MPMX19_04910at 365.454 kb on - strand, within MPMX19_04910at 365.454 kb on - strand, within MPMX19_04910at 365.454 kb on - strand, within MPMX19_04910at 366.023 kb on + strandat 366.024 kb on - strandat 366.079 kb on + strandat 366.079 kb on + strandat 366.079 kb on + strandat 366.079 kb on + strandat 366.080 kb on - strandat 366.118 kb on + strandat 366.118 kb on + strandat 366.118 kb on + strandat 366.119 kb on - strandat 366.689 kb on + strand, within MPMX19_04911at 366.690 kb on - strand, within MPMX19_04911at 366.690 kb on - strand, within MPMX19_04911at 367.238 kb on - strand, within MPMX19_04911at 367.341 kb on + strand, within MPMX19_04911at 367.342 kb on - strand, within MPMX19_04911at 367.342 kb on - strand, within MPMX19_04911at 367.342 kb on - strand, within MPMX19_04911at 367.533 kb on + strand, within MPMX19_04911at 367.533 kb on + strand, within MPMX19_04911at 367.534 kb on - strand, within MPMX19_04911at 367.616 kb on - strand, within MPMX19_04911at 368.309 kb on - strandat 368.325 kb on + strandat 368.325 kb on + strandat 368.325 kb on + strandat 368.325 kb on + strandat 368.325 kb on + strandat 368.325 kb on + strandat 368.326 kb on - strandat 368.326 kb on - strandat 368.326 kb on - strandat 368.326 kb on - strandat 368.326 kb on - strandat 368.326 kb on - strandat 368.326 kb on - strandat 368.326 kb on - strandat 368.326 kb on - strandat 368.326 kb on - strandat 368.326 kb on - strandat 368.327 kb on + strandat 368.328 kb on - strandat 368.337 kb on - strandat 368.364 kb on + strandat 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.565 kb on + strand, within MPMX19_04912at 368.566 kb on - strand, within MPMX19_04912at 368.566 kb on - strand, within MPMX19_04912at 368.566 kb on - strand, within MPMX19_04912at 368.566 kb on - strand, within MPMX19_04912at 368.566 kb on - strand, within MPMX19_04912at 368.781 kb on + strand, within MPMX19_04912at 368.781 kb on + strand, within MPMX19_04912at 368.781 kb on + strand, within MPMX19_04912at 368.781 kb on + strand, within MPMX19_04912at 368.781 kb on + strand, within MPMX19_04912at 368.782 kb on - strand, within MPMX19_04912at 368.782 kb on - strand, within MPMX19_04912at 368.782 kb on - strand, within MPMX19_04912at 368.782 kb on - strand, within MPMX19_04912at 368.782 kb on - strand, within MPMX19_04912at 368.931 kb on + strand, within MPMX19_04912at 368.931 kb on + strand, within MPMX19_04912at 368.931 kb on + strand, within MPMX19_04912at 368.932 kb on - strand, within MPMX19_04912at 368.932 kb on - strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.119 kb on + strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912at 369.120 kb on - strand, within MPMX19_04912

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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365,330 + MPMX19_04910 0.57 +0.1
365,330 + MPMX19_04910 0.57 +0.8
365,330 + MPMX19_04910 0.57 -0.2
365,330 + MPMX19_04910 0.57 -0.5
365,330 + MPMX19_04910 0.57 +1.9
365,331 - MPMX19_04910 0.57 +0.5
365,331 - MPMX19_04910 0.57 +1.0
365,331 - MPMX19_04910 0.57 +0.1
365,331 - MPMX19_04910 0.57 +0.5
365,331 - MPMX19_04910 0.57 +0.2
365,331 - MPMX19_04910 0.57 +2.5
365,331 - MPMX19_04910 0.57 +0.3
365,331 - MPMX19_04910 0.57 +0.5
365,339 + MPMX19_04910 0.57 +0.8
365,453 + MPMX19_04910 0.64 -0.2
365,453 + MPMX19_04910 0.64 +0.7
365,453 + MPMX19_04910 0.64 +0.3
365,453 + MPMX19_04910 0.64 +0.2
365,454 - MPMX19_04910 0.64 +0.1
365,454 - MPMX19_04910 0.64 +1.1
365,454 - MPMX19_04910 0.64 -0.3
366,023 + +0.6
366,024 - -0.5
366,079 + +0.2
366,079 + +0.8
366,079 + -0.3
366,079 + -0.9
366,080 - +1.5
366,118 + +1.7
366,118 + +0.7
366,118 + -1.5
366,119 - -0.5
366,689 + MPMX19_04911 0.26 -0.7
366,690 - MPMX19_04911 0.26 -0.9
366,690 - MPMX19_04911 0.26 -0.9
367,238 - MPMX19_04911 0.53 -0.5
367,341 + MPMX19_04911 0.58 -1.5
367,342 - MPMX19_04911 0.58 -0.1
367,342 - MPMX19_04911 0.58 -0.3
367,342 - MPMX19_04911 0.58 +2.1
367,533 + MPMX19_04911 0.67 +0.2
367,533 + MPMX19_04911 0.67 +0.3
367,534 - MPMX19_04911 0.67 -0.4
367,616 - MPMX19_04911 0.71 -1.3
368,309 - -0.5
368,325 + +0.3
368,325 + +0.4
368,325 + +0.9
368,325 + -1.7
368,325 + -2.5
368,325 + -0.3
368,326 - -1.1
368,326 - -0.6
368,326 - +0.1
368,326 - +1.1
368,326 - +1.1
368,326 - -0.9
368,326 - -0.5
368,326 - +0.2
368,326 - -0.5
368,326 - +0.3
368,326 - +0.1
368,327 + -0.2
368,328 - -0.9
368,337 - +0.1
368,364 + +0.5
368,565 + MPMX19_04912 0.14 +0.7
368,565 + MPMX19_04912 0.14 +0.1
368,565 + MPMX19_04912 0.14 -0.7
368,565 + MPMX19_04912 0.14 -0.5
368,565 + MPMX19_04912 0.14 -0.5
368,565 + MPMX19_04912 0.14 -1.3
368,565 + MPMX19_04912 0.14 +2.1
368,565 + MPMX19_04912 0.14 +1.5
368,565 + MPMX19_04912 0.14 -2.4
368,565 + MPMX19_04912 0.14 +0.1
368,565 + MPMX19_04912 0.14 -0.8
368,566 - MPMX19_04912 0.14 -0.5
368,566 - MPMX19_04912 0.14 -0.2
368,566 - MPMX19_04912 0.14 -0.5
368,566 - MPMX19_04912 0.14 -1.7
368,566 - MPMX19_04912 0.14 -0.3
368,781 + MPMX19_04912 0.34 +0.1
368,781 + MPMX19_04912 0.34 -1.5
368,781 + MPMX19_04912 0.34 -1.3
368,781 + MPMX19_04912 0.34 -0.5
368,781 + MPMX19_04912 0.34 -0.8
368,782 - MPMX19_04912 0.34 -1.3
368,782 - MPMX19_04912 0.34 +0.3
368,782 - MPMX19_04912 0.34 -0.5
368,782 - MPMX19_04912 0.34 -0.0
368,782 - MPMX19_04912 0.34 +1.2
368,931 + MPMX19_04912 0.47 +1.9
368,931 + MPMX19_04912 0.47 +0.7
368,931 + MPMX19_04912 0.47 -0.8
368,932 - MPMX19_04912 0.47 +0.2
368,932 - MPMX19_04912 0.47 -1.0
369,119 + MPMX19_04912 0.64 -1.7
369,119 + MPMX19_04912 0.64 +0.3
369,119 + MPMX19_04912 0.64 +0.4
369,119 + MPMX19_04912 0.64 -0.7
369,119 + MPMX19_04912 0.64 -1.3
369,119 + MPMX19_04912 0.64 +0.1
369,119 + MPMX19_04912 0.64 -0.1
369,119 + MPMX19_04912 0.64 -0.7
369,119 + MPMX19_04912 0.64 -2.1
369,119 + MPMX19_04912 0.64 +2.1
369,119 + MPMX19_04912 0.64 -1.1
369,119 + MPMX19_04912 0.64 +0.1
369,119 + MPMX19_04912 0.64 -0.2
369,119 + MPMX19_04912 0.64 -1.0
369,119 + MPMX19_04912 0.64 -1.9
369,119 + MPMX19_04912 0.64 -2.3
369,120 - MPMX19_04912 0.64 -0.7
369,120 - MPMX19_04912 0.64 -1.3
369,120 - MPMX19_04912 0.64 -0.3
369,120 - MPMX19_04912 0.64 -0.4
369,120 - MPMX19_04912 0.64 -0.5
369,120 - MPMX19_04912 0.64 -0.9
369,120 - MPMX19_04912 0.64 -1.3
369,120 - MPMX19_04912 0.64 +0.6
369,120 - MPMX19_04912 0.64 -0.2
369,120 - MPMX19_04912 0.64 -1.7
369,120 - MPMX19_04912 0.64 -0.7
369,120 - MPMX19_04912 0.64 -0.8
369,120 - MPMX19_04912 0.64 -0.9
369,120 - MPMX19_04912 0.64 -0.9
369,120 - MPMX19_04912 0.64 -0.5
369,120 - MPMX19_04912 0.64 +0.1

Or see this region's nucleotide sequence