Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04552

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04550 and MPMX19_04551 are separated by 13 nucleotidesMPMX19_04551 and MPMX19_04552 are separated by 62 nucleotidesMPMX19_04552 and MPMX19_04553 are separated by 47 nucleotidesMPMX19_04553 and MPMX19_04554 are separated by 229 nucleotides MPMX19_04550: MPMX19_04550 - L-cystine transport system permease protein YecS, at 927,076 to 927,771 _04550 MPMX19_04551: MPMX19_04551 - HTH-type transcriptional repressor RspR, at 927,785 to 928,474 _04551 MPMX19_04552: MPMX19_04552 - D-hydantoinase, at 928,537 to 929,961 _04552 MPMX19_04553: MPMX19_04553 - hypothetical protein, at 930,009 to 930,425 _04553 MPMX19_04554: MPMX19_04554 - Response regulator PleD, at 930,655 to 931,371 _04554 Position (kb) 928 929 930Strain fitness (log2 ratio) -2 -1 0 1 2at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.670 kb on + strand, within MPMX19_04550at 927.671 kb on - strand, within MPMX19_04550at 927.671 kb on - strand, within MPMX19_04550at 927.671 kb on - strand, within MPMX19_04550at 927.671 kb on - strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.673 kb on + strand, within MPMX19_04550at 927.674 kb on - strand, within MPMX19_04550at 927.740 kb on - strandat 928.017 kb on - strand, within MPMX19_04551at 928.193 kb on + strand, within MPMX19_04551at 928.194 kb on - strand, within MPMX19_04551at 928.194 kb on - strand, within MPMX19_04551at 928.463 kb on + strandat 928.464 kb on - strandat 928.464 kb on - strandat 928.464 kb on - strandat 928.472 kb on + strandat 928.473 kb on - strandat 928.473 kb on - strandat 928.556 kb on + strandat 928.556 kb on + strandat 928.556 kb on + strandat 928.556 kb on + strandat 928.867 kb on + strand, within MPMX19_04552at 928.867 kb on + strand, within MPMX19_04552at 928.868 kb on - strand, within MPMX19_04552at 928.868 kb on - strand, within MPMX19_04552at 928.904 kb on - strand, within MPMX19_04552at 928.904 kb on - strand, within MPMX19_04552at 928.904 kb on - strand, within MPMX19_04552at 928.981 kb on + strand, within MPMX19_04552at 928.981 kb on + strand, within MPMX19_04552at 928.981 kb on + strand, within MPMX19_04552at 928.982 kb on - strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 928.999 kb on + strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.000 kb on - strand, within MPMX19_04552at 929.008 kb on + strand, within MPMX19_04552at 929.008 kb on + strand, within MPMX19_04552at 929.008 kb on + strand, within MPMX19_04552at 929.008 kb on + strand, within MPMX19_04552at 929.009 kb on - strand, within MPMX19_04552at 929.009 kb on - strand, within MPMX19_04552at 929.009 kb on - strand, within MPMX19_04552at 929.009 kb on - strand, within MPMX19_04552at 929.009 kb on - strand, within MPMX19_04552at 929.162 kb on - strand, within MPMX19_04552at 929.320 kb on + strand, within MPMX19_04552at 929.320 kb on + strand, within MPMX19_04552at 929.320 kb on + strand, within MPMX19_04552at 929.320 kb on + strand, within MPMX19_04552at 929.320 kb on + strand, within MPMX19_04552at 929.321 kb on - strand, within MPMX19_04552at 929.321 kb on - strand, within MPMX19_04552at 929.321 kb on - strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.504 kb on - strand, within MPMX19_04552at 929.680 kb on + strand, within MPMX19_04552at 929.680 kb on + strand, within MPMX19_04552at 929.680 kb on + strand, within MPMX19_04552at 929.680 kb on + strand, within MPMX19_04552at 929.680 kb on + strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.740 kb on + strand, within MPMX19_04552at 929.740 kb on + strand, within MPMX19_04552at 929.740 kb on + strand, within MPMX19_04552at 929.740 kb on + strand, within MPMX19_04552at 929.740 kb on + strand, within MPMX19_04552at 929.741 kb on - strand, within MPMX19_04552at 929.741 kb on - strand, within MPMX19_04552at 929.797 kb on + strand, within MPMX19_04552at 929.797 kb on + strand, within MPMX19_04552at 929.797 kb on + strand, within MPMX19_04552at 929.797 kb on + strand, within MPMX19_04552at 929.798 kb on - strand, within MPMX19_04552at 929.798 kb on - strand, within MPMX19_04552at 929.798 kb on - strand, within MPMX19_04552at 929.798 kb on - strand, within MPMX19_04552at 929.806 kb on + strand, within MPMX19_04552at 930.238 kb on - strand, within MPMX19_04553at 930.238 kb on - strand, within MPMX19_04553at 930.276 kb on + strand, within MPMX19_04553at 930.276 kb on + strand, within MPMX19_04553at 930.277 kb on - strand, within MPMX19_04553at 930.563 kb on + strandat 930.563 kb on + strandat 930.564 kb on - strandat 930.564 kb on - strandat 930.564 kb on - strandat 930.656 kb on + strandat 930.656 kb on + strandat 930.656 kb on + strandat 930.656 kb on + strandat 930.656 kb on + strandat 930.657 kb on - strandat 930.657 kb on - strandat 930.657 kb on - strandat 930.701 kb on + strandat 930.701 kb on + strandat 930.701 kb on + strandat 930.702 kb on - strandat 930.702 kb on - strandat 930.702 kb on - strandat 930.766 kb on + strand, within MPMX19_04554at 930.766 kb on + strand, within MPMX19_04554at 930.766 kb on + strand, within MPMX19_04554at 930.767 kb on - strand, within MPMX19_04554at 930.767 kb on - strand, within MPMX19_04554at 930.860 kb on + strand, within MPMX19_04554at 930.861 kb on - strand, within MPMX19_04554at 930.861 kb on - strand, within MPMX19_04554at 930.861 kb on - strand, within MPMX19_04554at 930.861 kb on - strand, within MPMX19_04554at 930.932 kb on - strand, within MPMX19_04554

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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927,670 + MPMX19_04550 0.85 +0.0
927,670 + MPMX19_04550 0.85 -0.9
927,670 + MPMX19_04550 0.85 -0.3
927,670 + MPMX19_04550 0.85 -0.4
927,670 + MPMX19_04550 0.85 -0.4
927,670 + MPMX19_04550 0.85 +2.1
927,670 + MPMX19_04550 0.85 -0.8
927,670 + MPMX19_04550 0.85 -1.6
927,670 + MPMX19_04550 0.85 -1.4
927,671 - MPMX19_04550 0.85 -0.3
927,671 - MPMX19_04550 0.85 -0.6
927,671 - MPMX19_04550 0.85 -2.0
927,671 - MPMX19_04550 0.85 -2.4
927,673 + MPMX19_04550 0.86 +0.2
927,673 + MPMX19_04550 0.86 -0.6
927,673 + MPMX19_04550 0.86 -0.8
927,673 + MPMX19_04550 0.86 -0.4
927,673 + MPMX19_04550 0.86 -2.5
927,673 + MPMX19_04550 0.86 -0.2
927,673 + MPMX19_04550 0.86 -0.3
927,673 + MPMX19_04550 0.86 +0.8
927,673 + MPMX19_04550 0.86 +1.8
927,673 + MPMX19_04550 0.86 -0.8
927,673 + MPMX19_04550 0.86 -0.9
927,673 + MPMX19_04550 0.86 +0.2
927,674 - MPMX19_04550 0.86 -1.8
927,740 - -0.9
928,017 - MPMX19_04551 0.34 -1.2
928,193 + MPMX19_04551 0.59 -0.9
928,194 - MPMX19_04551 0.59 -1.8
928,194 - MPMX19_04551 0.59 -0.9
928,463 + +0.8
928,464 - +1.1
928,464 - -0.6
928,464 - +0.2
928,472 + +0.2
928,473 - -1.2
928,473 - -2.2
928,556 + -0.2
928,556 + +0.3
928,556 + +0.4
928,556 + -0.6
928,867 + MPMX19_04552 0.23 -0.7
928,867 + MPMX19_04552 0.23 -0.8
928,868 - MPMX19_04552 0.23 +1.8
928,868 - MPMX19_04552 0.23 -0.7
928,904 - MPMX19_04552 0.26 -0.6
928,904 - MPMX19_04552 0.26 -1.4
928,904 - MPMX19_04552 0.26 -0.2
928,981 + MPMX19_04552 0.31 +1.4
928,981 + MPMX19_04552 0.31 +0.5
928,981 + MPMX19_04552 0.31 -2.2
928,982 - MPMX19_04552 0.31 -0.5
928,999 + MPMX19_04552 0.32 -1.4
928,999 + MPMX19_04552 0.32 -0.2
928,999 + MPMX19_04552 0.32 +0.0
928,999 + MPMX19_04552 0.32 -1.2
928,999 + MPMX19_04552 0.32 -0.9
928,999 + MPMX19_04552 0.32 -0.4
928,999 + MPMX19_04552 0.32 -1.2
928,999 + MPMX19_04552 0.32 -0.4
928,999 + MPMX19_04552 0.32 -1.5
928,999 + MPMX19_04552 0.32 -1.4
928,999 + MPMX19_04552 0.32 -2.2
928,999 + MPMX19_04552 0.32 +0.2
929,000 - MPMX19_04552 0.32 -0.2
929,000 - MPMX19_04552 0.32 +0.2
929,000 - MPMX19_04552 0.32 +0.2
929,000 - MPMX19_04552 0.32 -0.2
929,000 - MPMX19_04552 0.32 +1.1
929,000 - MPMX19_04552 0.32 -1.0
929,000 - MPMX19_04552 0.32 -1.2
929,000 - MPMX19_04552 0.32 +0.1
929,000 - MPMX19_04552 0.32 +0.2
929,000 - MPMX19_04552 0.32 +0.6
929,000 - MPMX19_04552 0.32 -0.8
929,000 - MPMX19_04552 0.32 -1.8
929,008 + MPMX19_04552 0.33 +0.1
929,008 + MPMX19_04552 0.33 -0.8
929,008 + MPMX19_04552 0.33 -1.2
929,008 + MPMX19_04552 0.33 -1.1
929,009 - MPMX19_04552 0.33 +0.4
929,009 - MPMX19_04552 0.33 -0.5
929,009 - MPMX19_04552 0.33 -0.5
929,009 - MPMX19_04552 0.33 -2.0
929,009 - MPMX19_04552 0.33 +0.1
929,162 - MPMX19_04552 0.44 -0.2
929,320 + MPMX19_04552 0.55 +0.4
929,320 + MPMX19_04552 0.55 +0.5
929,320 + MPMX19_04552 0.55 +0.2
929,320 + MPMX19_04552 0.55 -0.4
929,320 + MPMX19_04552 0.55 -0.4
929,321 - MPMX19_04552 0.55 -0.3
929,321 - MPMX19_04552 0.55 +0.4
929,321 - MPMX19_04552 0.55 -0.2
929,341 + MPMX19_04552 0.56 +0.0
929,341 + MPMX19_04552 0.56 -0.7
929,341 + MPMX19_04552 0.56 -0.6
929,341 + MPMX19_04552 0.56 -2.0
929,341 + MPMX19_04552 0.56 -0.8
929,341 + MPMX19_04552 0.56 -0.2
929,341 + MPMX19_04552 0.56 -0.2
929,341 + MPMX19_04552 0.56 +0.5
929,341 + MPMX19_04552 0.56 -1.5
929,341 + MPMX19_04552 0.56 -0.1
929,341 + MPMX19_04552 0.56 +0.1
929,341 + MPMX19_04552 0.56 -1.5
929,341 + MPMX19_04552 0.56 -0.6
929,341 + MPMX19_04552 0.56 -2.2
929,341 + MPMX19_04552 0.56 +2.1
929,341 + MPMX19_04552 0.56 -0.2
929,342 - MPMX19_04552 0.56 -1.5
929,342 - MPMX19_04552 0.56 -0.8
929,342 - MPMX19_04552 0.56 +0.3
929,342 - MPMX19_04552 0.56 -1.2
929,342 - MPMX19_04552 0.56 +0.3
929,342 - MPMX19_04552 0.56 +0.2
929,342 - MPMX19_04552 0.56 -1.8
929,342 - MPMX19_04552 0.56 -1.6
929,342 - MPMX19_04552 0.56 -1.0
929,342 - MPMX19_04552 0.56 +0.6
929,342 - MPMX19_04552 0.56 -0.8
929,342 - MPMX19_04552 0.56 +0.8
929,342 - MPMX19_04552 0.56 -0.2
929,342 - MPMX19_04552 0.56 -0.2
929,342 - MPMX19_04552 0.56 -0.5
929,342 - MPMX19_04552 0.56 -1.2
929,342 - MPMX19_04552 0.56 +0.8
929,342 - MPMX19_04552 0.56 -0.1
929,342 - MPMX19_04552 0.56 +0.4
929,504 - MPMX19_04552 0.68 -0.4
929,680 + MPMX19_04552 0.80 -0.5
929,680 + MPMX19_04552 0.80 +0.1
929,680 + MPMX19_04552 0.80 +0.3
929,680 + MPMX19_04552 0.80 -0.2
929,680 + MPMX19_04552 0.80 -1.2
929,681 - MPMX19_04552 0.80 -0.4
929,681 - MPMX19_04552 0.80 -0.1
929,681 - MPMX19_04552 0.80 +0.5
929,681 - MPMX19_04552 0.80 +0.3
929,681 - MPMX19_04552 0.80 -0.5
929,681 - MPMX19_04552 0.80 -1.2
929,681 - MPMX19_04552 0.80 +0.1
929,681 - MPMX19_04552 0.80 +0.0
929,740 + MPMX19_04552 0.84 -0.7
929,740 + MPMX19_04552 0.84 -1.0
929,740 + MPMX19_04552 0.84 +1.1
929,740 + MPMX19_04552 0.84 -1.9
929,740 + MPMX19_04552 0.84 -0.2
929,741 - MPMX19_04552 0.84 +1.8
929,741 - MPMX19_04552 0.84 -0.1
929,797 + MPMX19_04552 0.88 -0.2
929,797 + MPMX19_04552 0.88 +0.4
929,797 + MPMX19_04552 0.88 +0.5
929,797 + MPMX19_04552 0.88 -1.5
929,798 - MPMX19_04552 0.88 -1.1
929,798 - MPMX19_04552 0.88 +0.4
929,798 - MPMX19_04552 0.88 +0.5
929,798 - MPMX19_04552 0.88 -0.2
929,806 + MPMX19_04552 0.89 +0.6
930,238 - MPMX19_04553 0.55 -0.2
930,238 - MPMX19_04553 0.55 +0.8
930,276 + MPMX19_04553 0.64 -2.0
930,276 + MPMX19_04553 0.64 +1.7
930,277 - MPMX19_04553 0.64 -1.2
930,563 + +0.4
930,563 + -0.9
930,564 - +0.8
930,564 - +1.1
930,564 - -1.5
930,656 + -0.2
930,656 + -0.8
930,656 + -0.7
930,656 + -1.8
930,656 + +0.8
930,657 - -2.2
930,657 - -0.5
930,657 - -1.1
930,701 + -0.2
930,701 + +0.8
930,701 + -0.4
930,702 - -0.2
930,702 - -0.9
930,702 - +0.2
930,766 + MPMX19_04554 0.15 -0.9
930,766 + MPMX19_04554 0.15 +0.4
930,766 + MPMX19_04554 0.15 +1.4
930,767 - MPMX19_04554 0.16 -0.5
930,767 - MPMX19_04554 0.16 -0.8
930,860 + MPMX19_04554 0.29 -1.2
930,861 - MPMX19_04554 0.29 -1.8
930,861 - MPMX19_04554 0.29 +0.5
930,861 - MPMX19_04554 0.29 -2.0
930,861 - MPMX19_04554 0.29 +1.2
930,932 - MPMX19_04554 0.39 -0.5

Or see this region's nucleotide sequence