Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04548 and MPMX19_04549 are separated by 47 nucleotides MPMX19_04549 and MPMX19_04550 are separated by 79 nucleotides MPMX19_04550 and MPMX19_04551 are separated by 13 nucleotides MPMX19_04551 and MPMX19_04552 are separated by 62 nucleotides
MPMX19_04548: MPMX19_04548 - 4-hydroxy-tetrahydrodipicolinate synthase, at 925,225 to 926,118
_04548
MPMX19_04549: MPMX19_04549 - L-cystine-binding protein FliY, at 926,166 to 926,996
_04549
MPMX19_04550: MPMX19_04550 - L-cystine transport system permease protein YecS, at 927,076 to 927,771
_04550
MPMX19_04551: MPMX19_04551 - HTH-type transcriptional repressor RspR, at 927,785 to 928,474
_04551
MPMX19_04552: MPMX19_04552 - D-hydantoinase, at 928,537 to 929,961
_04552
Position (kb) 927
928 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 926.162 kb on + strand at 926.162 kb on + strand at 926.162 kb on + strand at 926.162 kb on + strand at 926.162 kb on + strand at 926.162 kb on + strand at 926.162 kb on + strand at 926.162 kb on + strand at 926.162 kb on + strand at 926.162 kb on + strand at 926.162 kb on + strand at 926.163 kb on - strand at 926.163 kb on - strand at 926.163 kb on - strand at 926.163 kb on - strand at 926.409 kb on + strand, within MPMX19_04549 at 926.409 kb on + strand, within MPMX19_04549 at 926.409 kb on + strand, within MPMX19_04549 at 926.409 kb on + strand, within MPMX19_04549 at 926.410 kb on - strand, within MPMX19_04549 at 926.410 kb on - strand, within MPMX19_04549 at 926.410 kb on - strand, within MPMX19_04549 at 926.526 kb on + strand, within MPMX19_04549 at 926.526 kb on + strand, within MPMX19_04549 at 926.527 kb on - strand, within MPMX19_04549 at 926.527 kb on - strand, within MPMX19_04549 at 926.727 kb on + strand, within MPMX19_04549 at 926.727 kb on + strand, within MPMX19_04549 at 926.727 kb on + strand, within MPMX19_04549 at 926.727 kb on + strand, within MPMX19_04549 at 926.727 kb on + strand, within MPMX19_04549 at 926.728 kb on - strand, within MPMX19_04549 at 926.791 kb on - strand, within MPMX19_04549 at 926.922 kb on + strand at 926.922 kb on + strand at 926.923 kb on - strand at 926.923 kb on - strand at 926.923 kb on - strand at 926.923 kb on - strand at 927.112 kb on + strand at 927.112 kb on + strand at 927.112 kb on + strand at 927.112 kb on + strand at 927.112 kb on + strand at 927.112 kb on + strand at 927.113 kb on - strand at 927.113 kb on - strand at 927.113 kb on - strand at 927.113 kb on - strand at 927.128 kb on - strand at 927.128 kb on - strand at 927.230 kb on - strand, within MPMX19_04550 at 927.259 kb on + strand, within MPMX19_04550 at 927.259 kb on + strand, within MPMX19_04550 at 927.259 kb on + strand, within MPMX19_04550 at 927.259 kb on + strand, within MPMX19_04550 at 927.259 kb on + strand, within MPMX19_04550 at 927.259 kb on + strand, within MPMX19_04550 at 927.259 kb on + strand, within MPMX19_04550 at 927.259 kb on + strand, within MPMX19_04550 at 927.259 kb on + strand, within MPMX19_04550 at 927.259 kb on + strand, within MPMX19_04550 at 927.260 kb on - strand, within MPMX19_04550 at 927.260 kb on - strand, within MPMX19_04550 at 927.260 kb on - strand, within MPMX19_04550 at 927.260 kb on - strand, within MPMX19_04550 at 927.260 kb on - strand, within MPMX19_04550 at 927.260 kb on - strand, within MPMX19_04550 at 927.260 kb on - strand, within MPMX19_04550 at 927.260 kb on - strand, within MPMX19_04550 at 927.310 kb on + strand, within MPMX19_04550 at 927.310 kb on + strand, within MPMX19_04550 at 927.310 kb on + strand, within MPMX19_04550 at 927.310 kb on + strand, within MPMX19_04550 at 927.310 kb on + strand, within MPMX19_04550 at 927.310 kb on + strand, within MPMX19_04550 at 927.310 kb on + strand, within MPMX19_04550 at 927.310 kb on + strand, within MPMX19_04550 at 927.311 kb on - strand, within MPMX19_04550 at 927.311 kb on - strand, within MPMX19_04550 at 927.311 kb on - strand, within MPMX19_04550 at 927.311 kb on - strand, within MPMX19_04550 at 927.311 kb on - strand, within MPMX19_04550 at 927.311 kb on - strand, within MPMX19_04550 at 927.311 kb on - strand, within MPMX19_04550 at 927.311 kb on - strand, within MPMX19_04550 at 927.392 kb on - strand, within MPMX19_04550 at 927.392 kb on - strand, within MPMX19_04550 at 927.392 kb on - strand, within MPMX19_04550 at 927.490 kb on + strand, within MPMX19_04550 at 927.490 kb on + strand, within MPMX19_04550 at 927.490 kb on + strand, within MPMX19_04550 at 927.490 kb on + strand, within MPMX19_04550 at 927.490 kb on + strand, within MPMX19_04550 at 927.490 kb on + strand, within MPMX19_04550 at 927.490 kb on + strand, within MPMX19_04550 at 927.490 kb on + strand, within MPMX19_04550 at 927.490 kb on + strand, within MPMX19_04550 at 927.490 kb on + strand, within MPMX19_04550 at 927.490 kb on + strand, within MPMX19_04550 at 927.490 kb on + strand, within MPMX19_04550 at 927.490 kb on + strand, within MPMX19_04550 at 927.490 kb on + strand, within MPMX19_04550 at 927.490 kb on + strand, within MPMX19_04550 at 927.491 kb on - strand, within MPMX19_04550 at 927.491 kb on - strand, within MPMX19_04550 at 927.491 kb on - strand, within MPMX19_04550 at 927.491 kb on - strand, within MPMX19_04550 at 927.491 kb on - strand, within MPMX19_04550 at 927.491 kb on - strand, within MPMX19_04550 at 927.491 kb on - strand, within MPMX19_04550 at 927.491 kb on - strand, within MPMX19_04550 at 927.491 kb on - strand, within MPMX19_04550 at 927.491 kb on - strand, within MPMX19_04550 at 927.491 kb on - strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.670 kb on + strand, within MPMX19_04550 at 927.671 kb on - strand, within MPMX19_04550 at 927.671 kb on - strand, within MPMX19_04550 at 927.671 kb on - strand, within MPMX19_04550 at 927.671 kb on - strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.673 kb on + strand, within MPMX19_04550 at 927.674 kb on - strand, within MPMX19_04550 at 927.740 kb on - strand at 928.017 kb on - strand, within MPMX19_04551 at 928.193 kb on + strand, within MPMX19_04551 at 928.194 kb on - strand, within MPMX19_04551 at 928.194 kb on - strand, within MPMX19_04551 at 928.463 kb on + strand at 928.464 kb on - strand at 928.464 kb on - strand at 928.464 kb on - strand at 928.472 kb on + strand at 928.473 kb on - strand at 928.473 kb on - strand at 928.556 kb on + strand at 928.556 kb on + strand at 928.556 kb on + strand at 928.556 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 926,162 + +0.0 926,162 + -0.8 926,162 + +0.4 926,162 + +0.1 926,162 + -3.1 926,162 + +0.1 926,162 + -1.9 926,162 + -1.2 926,162 + +1.4 926,162 + +2.4 926,162 + -1.1 926,163 - -0.4 926,163 - +1.1 926,163 - +0.4 926,163 - +1.2 926,409 + MPMX19_04549 0.29 -0.4 926,409 + MPMX19_04549 0.29 -0.2 926,409 + MPMX19_04549 0.29 -0.5 926,409 + MPMX19_04549 0.29 -2.0 926,410 - MPMX19_04549 0.29 -0.8 926,410 - MPMX19_04549 0.29 +0.2 926,410 - MPMX19_04549 0.29 -0.2 926,526 + MPMX19_04549 0.43 +1.4 926,526 + MPMX19_04549 0.43 -0.4 926,527 - MPMX19_04549 0.43 +0.0 926,527 - MPMX19_04549 0.43 +0.1 926,727 + MPMX19_04549 0.68 -0.1 926,727 + MPMX19_04549 0.68 +0.2 926,727 + MPMX19_04549 0.68 -1.2 926,727 + MPMX19_04549 0.68 +0.1 926,727 + MPMX19_04549 0.68 +0.1 926,728 - MPMX19_04549 0.68 +0.0 926,791 - MPMX19_04549 0.75 -1.1 926,922 + -0.5 926,922 + +1.6 926,923 - -0.8 926,923 - +0.2 926,923 - +0.5 926,923 - -0.2 927,112 + -1.5 927,112 + -1.2 927,112 + -1.0 927,112 + -1.1 927,112 + -1.5 927,112 + +0.1 927,113 - -0.8 927,113 - -0.8 927,113 - -1.1 927,113 - -0.8 927,128 - +0.1 927,128 - +0.1 927,230 - MPMX19_04550 0.22 -0.2 927,259 + MPMX19_04550 0.26 -1.1 927,259 + MPMX19_04550 0.26 -0.4 927,259 + MPMX19_04550 0.26 +1.4 927,259 + MPMX19_04550 0.26 -1.1 927,259 + MPMX19_04550 0.26 -1.2 927,259 + MPMX19_04550 0.26 -0.5 927,259 + MPMX19_04550 0.26 -0.2 927,259 + MPMX19_04550 0.26 -1.5 927,259 + MPMX19_04550 0.26 -0.5 927,259 + MPMX19_04550 0.26 -0.2 927,260 - MPMX19_04550 0.26 -0.2 927,260 - MPMX19_04550 0.26 +0.6 927,260 - MPMX19_04550 0.26 +0.8 927,260 - MPMX19_04550 0.26 +0.1 927,260 - MPMX19_04550 0.26 -2.0 927,260 - MPMX19_04550 0.26 +0.8 927,260 - MPMX19_04550 0.26 +0.0 927,260 - MPMX19_04550 0.26 -0.3 927,310 + MPMX19_04550 0.34 -1.5 927,310 + MPMX19_04550 0.34 -0.2 927,310 + MPMX19_04550 0.34 -1.3 927,310 + MPMX19_04550 0.34 -1.2 927,310 + MPMX19_04550 0.34 -0.3 927,310 + MPMX19_04550 0.34 -0.8 927,310 + MPMX19_04550 0.34 +0.8 927,310 + MPMX19_04550 0.34 -0.8 927,311 - MPMX19_04550 0.34 -0.9 927,311 - MPMX19_04550 0.34 +0.1 927,311 - MPMX19_04550 0.34 -2.5 927,311 - MPMX19_04550 0.34 -1.5 927,311 - MPMX19_04550 0.34 +0.1 927,311 - MPMX19_04550 0.34 -0.2 927,311 - MPMX19_04550 0.34 -1.6 927,311 - MPMX19_04550 0.34 -0.2 927,392 - MPMX19_04550 0.45 -1.2 927,392 - MPMX19_04550 0.45 -0.9 927,392 - MPMX19_04550 0.45 +0.2 927,490 + MPMX19_04550 0.59 +0.8 927,490 + MPMX19_04550 0.59 -1.5 927,490 + MPMX19_04550 0.59 +1.1 927,490 + MPMX19_04550 0.59 -0.5 927,490 + MPMX19_04550 0.59 -0.8 927,490 + MPMX19_04550 0.59 +0.2 927,490 + MPMX19_04550 0.59 -1.1 927,490 + MPMX19_04550 0.59 -1.5 927,490 + MPMX19_04550 0.59 -0.8 927,490 + MPMX19_04550 0.59 -0.7 927,490 + MPMX19_04550 0.59 -0.4 927,490 + MPMX19_04550 0.59 -2.5 927,490 + MPMX19_04550 0.59 -1.5 927,490 + MPMX19_04550 0.59 -1.2 927,490 + MPMX19_04550 0.59 +2.4 927,491 - MPMX19_04550 0.60 -1.8 927,491 - MPMX19_04550 0.60 +0.2 927,491 - MPMX19_04550 0.60 +0.1 927,491 - MPMX19_04550 0.60 -0.2 927,491 - MPMX19_04550 0.60 -0.3 927,491 - MPMX19_04550 0.60 +0.1 927,491 - MPMX19_04550 0.60 +0.4 927,491 - MPMX19_04550 0.60 -2.6 927,491 - MPMX19_04550 0.60 -0.2 927,491 - MPMX19_04550 0.60 +1.3 927,491 - MPMX19_04550 0.60 -0.1 927,670 + MPMX19_04550 0.85 +0.0 927,670 + MPMX19_04550 0.85 -0.9 927,670 + MPMX19_04550 0.85 -0.3 927,670 + MPMX19_04550 0.85 -0.4 927,670 + MPMX19_04550 0.85 -0.4 927,670 + MPMX19_04550 0.85 +2.1 927,670 + MPMX19_04550 0.85 -0.8 927,670 + MPMX19_04550 0.85 -1.6 927,670 + MPMX19_04550 0.85 -1.4 927,671 - MPMX19_04550 0.85 -0.3 927,671 - MPMX19_04550 0.85 -0.6 927,671 - MPMX19_04550 0.85 -2.0 927,671 - MPMX19_04550 0.85 -2.4 927,673 + MPMX19_04550 0.86 +0.2 927,673 + MPMX19_04550 0.86 -0.6 927,673 + MPMX19_04550 0.86 -0.8 927,673 + MPMX19_04550 0.86 -0.4 927,673 + MPMX19_04550 0.86 -2.5 927,673 + MPMX19_04550 0.86 -0.2 927,673 + MPMX19_04550 0.86 -0.3 927,673 + MPMX19_04550 0.86 +0.8 927,673 + MPMX19_04550 0.86 +1.8 927,673 + MPMX19_04550 0.86 -0.8 927,673 + MPMX19_04550 0.86 -0.9 927,673 + MPMX19_04550 0.86 +0.2 927,674 - MPMX19_04550 0.86 -1.8 927,740 - -0.9 928,017 - MPMX19_04551 0.34 -1.2 928,193 + MPMX19_04551 0.59 -0.9 928,194 - MPMX19_04551 0.59 -1.8 928,194 - MPMX19_04551 0.59 -0.9 928,463 + +0.8 928,464 - +1.1 928,464 - -0.6 928,464 - +0.2 928,472 + +0.2 928,473 - -1.2 928,473 - -2.2 928,556 + -0.2 928,556 + +0.3 928,556 + +0.4 928,556 + -0.6
Or see this region's nucleotide sequence