Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04456

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04454 and MPMX19_04455 are separated by 433 nucleotidesMPMX19_04455 and MPMX19_04456 are separated by 99 nucleotidesMPMX19_04456 and MPMX19_04457 are separated by 61 nucleotides MPMX19_04454: MPMX19_04454 - hypothetical protein, at 821,622 to 821,837 _04454 MPMX19_04455: MPMX19_04455 - Arabinose 5-phosphate isomerase KdsD, at 822,271 to 822,726 _04455 MPMX19_04456: MPMX19_04456 - Histone deacetylase-like amidohydrolase, at 822,826 to 823,755 _04456 MPMX19_04457: MPMX19_04457 - Pyruvate, phosphate dikinase, at 823,817 to 825,532 _04457 Position (kb) 822 823 824Strain fitness (log2 ratio) -3 -2 -1 0 1at 822.045 kb on + strandat 822.045 kb on + strandat 822.045 kb on + strandat 822.046 kb on - strandat 822.088 kb on + strandat 822.088 kb on + strandat 822.088 kb on + strandat 822.088 kb on + strandat 822.088 kb on + strandat 822.089 kb on - strandat 822.089 kb on - strandat 822.089 kb on - strandat 822.089 kb on - strandat 822.089 kb on - strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.747 kb on + strandat 822.748 kb on - strandat 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.051 kb on + strand, within MPMX19_04456at 823.051 kb on + strand, within MPMX19_04456at 823.393 kb on + strand, within MPMX19_04456at 823.393 kb on + strand, within MPMX19_04456at 823.393 kb on + strand, within MPMX19_04456at 823.394 kb on - strand, within MPMX19_04456at 823.462 kb on + strand, within MPMX19_04456at 823.463 kb on - strand, within MPMX19_04456at 823.463 kb on - strand, within MPMX19_04456at 823.463 kb on - strand, within MPMX19_04456at 823.463 kb on - strand, within MPMX19_04456at 823.463 kb on - strand, within MPMX19_04456at 823.463 kb on - strand, within MPMX19_04456at 823.693 kb on + strandat 823.693 kb on + strandat 823.734 kb on + strandat 823.734 kb on + strandat 823.734 kb on + strandat 823.734 kb on + strandat 823.735 kb on - strandat 823.735 kb on - strandat 823.735 kb on - strandat 823.735 kb on - strandat 823.735 kb on - strandat 823.735 kb on - strandat 823.735 kb on - strandat 823.753 kb on + strandat 823.754 kb on - strandat 824.455 kb on + strand, within MPMX19_04457at 824.455 kb on + strand, within MPMX19_04457at 824.523 kb on + strand, within MPMX19_04457at 824.523 kb on + strand, within MPMX19_04457at 824.523 kb on + strand, within MPMX19_04457at 824.523 kb on + strand, within MPMX19_04457at 824.524 kb on - strand, within MPMX19_04457at 824.524 kb on - strand, within MPMX19_04457at 824.524 kb on - strand, within MPMX19_04457at 824.524 kb on - strand, within MPMX19_04457at 824.524 kb on - strand, within MPMX19_04457

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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822,045 + +0.0
822,045 + -0.9
822,045 + -2.5
822,046 - +1.4
822,088 + +1.4
822,088 + -0.5
822,088 + -0.3
822,088 + -3.0
822,088 + -0.7
822,089 - -2.0
822,089 - +0.3
822,089 - -1.3
822,089 - -1.2
822,089 - -1.5
822,715 + -0.0
822,715 + -0.7
822,715 + +1.4
822,715 + -0.0
822,715 + +0.4
822,715 + -0.7
822,715 + -0.6
822,715 + -0.2
822,715 + +0.5
822,715 + -0.2
822,715 + -1.9
822,715 + -0.4
822,715 + -0.9
822,716 - -0.9
822,716 - -0.6
822,716 - +0.8
822,716 - -0.7
822,716 - -0.7
822,716 - -0.4
822,716 - -2.0
822,716 - +0.0
822,716 - +0.3
822,716 - +0.8
822,716 - +0.3
822,716 - -0.7
822,716 - -0.5
822,716 - +0.6
822,747 + -1.7
822,748 - +0.3
823,012 + MPMX19_04456 0.20 -1.2
823,012 + MPMX19_04456 0.20 -0.7
823,012 + MPMX19_04456 0.20 -0.7
823,012 + MPMX19_04456 0.20 -0.3
823,012 + MPMX19_04456 0.20 -0.2
823,012 + MPMX19_04456 0.20 +0.8
823,012 + MPMX19_04456 0.20 +0.4
823,012 + MPMX19_04456 0.20 +0.8
823,012 + MPMX19_04456 0.20 -0.4
823,012 + MPMX19_04456 0.20 +0.3
823,013 - MPMX19_04456 0.20 +0.1
823,013 - MPMX19_04456 0.20 +0.1
823,013 - MPMX19_04456 0.20 +0.3
823,013 - MPMX19_04456 0.20 +0.1
823,013 - MPMX19_04456 0.20 -1.1
823,013 - MPMX19_04456 0.20 -0.2
823,013 - MPMX19_04456 0.20 +1.6
823,013 - MPMX19_04456 0.20 +0.5
823,013 - MPMX19_04456 0.20 -0.7
823,013 - MPMX19_04456 0.20 -2.9
823,013 - MPMX19_04456 0.20 -1.7
823,013 - MPMX19_04456 0.20 -1.5
823,051 + MPMX19_04456 0.24 -0.0
823,051 + MPMX19_04456 0.24 +1.1
823,393 + MPMX19_04456 0.61 +0.0
823,393 + MPMX19_04456 0.61 +1.4
823,393 + MPMX19_04456 0.61 -0.0
823,394 - MPMX19_04456 0.61 -2.7
823,462 + MPMX19_04456 0.68 -0.2
823,463 - MPMX19_04456 0.68 +0.1
823,463 - MPMX19_04456 0.68 -0.7
823,463 - MPMX19_04456 0.68 +1.1
823,463 - MPMX19_04456 0.68 +0.6
823,463 - MPMX19_04456 0.68 +1.3
823,463 - MPMX19_04456 0.68 -1.3
823,693 + -0.8
823,693 + +0.5
823,734 + -0.8
823,734 + -0.4
823,734 + +0.0
823,734 + -0.2
823,735 - -1.2
823,735 - -2.1
823,735 - -0.2
823,735 - -0.2
823,735 - +0.2
823,735 - -0.7
823,735 - -1.7
823,753 + +0.2
823,754 - -2.6
824,455 + MPMX19_04457 0.37 -1.2
824,455 + MPMX19_04457 0.37 -0.5
824,523 + MPMX19_04457 0.41 -1.2
824,523 + MPMX19_04457 0.41 -0.8
824,523 + MPMX19_04457 0.41 +0.3
824,523 + MPMX19_04457 0.41 -0.5
824,524 - MPMX19_04457 0.41 -0.1
824,524 - MPMX19_04457 0.41 +0.1
824,524 - MPMX19_04457 0.41 +1.3
824,524 - MPMX19_04457 0.41 +1.3
824,524 - MPMX19_04457 0.41 +0.0

Or see this region's nucleotide sequence