Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04379

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04377 and MPMX19_04378 are separated by 7 nucleotidesMPMX19_04378 and MPMX19_04379 overlap by 4 nucleotidesMPMX19_04379 and MPMX19_04380 are separated by 189 nucleotides MPMX19_04377: MPMX19_04377 - Inner membrane ABC transporter permease protein YdcV, at 743,681 to 744,475 _04377 MPMX19_04378: MPMX19_04378 - hypothetical protein, at 744,483 to 745,388 _04378 MPMX19_04379: MPMX19_04379 - Spermidine/putrescine import ATP-binding protein PotA, at 745,385 to 746,479 _04379 MPMX19_04380: MPMX19_04380 - HTH-type transcriptional repressor AllR, at 746,669 to 747,541 _04380 Position (kb) 745 746 747Strain fitness (log2 ratio) -2 -1 0 1 2at 744.502 kb on + strandat 744.502 kb on + strandat 744.526 kb on + strandat 744.526 kb on + strandat 744.526 kb on + strandat 744.526 kb on + strandat 744.526 kb on + strandat 744.526 kb on + strandat 744.526 kb on + strandat 744.527 kb on - strandat 744.527 kb on - strandat 744.527 kb on - strandat 744.527 kb on - strandat 744.527 kb on - strandat 744.527 kb on - strandat 744.527 kb on - strandat 744.527 kb on - strandat 744.527 kb on - strandat 744.527 kb on - strandat 744.527 kb on - strandat 744.527 kb on - strandat 744.527 kb on - strandat 744.527 kb on - strandat 744.527 kb on - strandat 744.607 kb on + strand, within MPMX19_04378at 744.607 kb on + strand, within MPMX19_04378at 744.607 kb on + strand, within MPMX19_04378at 744.608 kb on - strand, within MPMX19_04378at 744.608 kb on - strand, within MPMX19_04378at 744.608 kb on - strand, within MPMX19_04378at 744.616 kb on + strand, within MPMX19_04378at 744.616 kb on + strand, within MPMX19_04378at 744.616 kb on + strand, within MPMX19_04378at 744.616 kb on + strand, within MPMX19_04378at 744.617 kb on - strand, within MPMX19_04378at 744.617 kb on - strand, within MPMX19_04378at 744.617 kb on - strand, within MPMX19_04378at 744.617 kb on - strand, within MPMX19_04378at 744.617 kb on - strand, within MPMX19_04378at 744.895 kb on + strand, within MPMX19_04378at 744.895 kb on + strand, within MPMX19_04378at 744.895 kb on + strand, within MPMX19_04378at 744.895 kb on + strand, within MPMX19_04378at 744.895 kb on + strand, within MPMX19_04378at 744.896 kb on - strand, within MPMX19_04378at 744.896 kb on - strand, within MPMX19_04378at 744.896 kb on - strand, within MPMX19_04378at 744.896 kb on - strand, within MPMX19_04378at 744.896 kb on - strand, within MPMX19_04378at 744.896 kb on - strand, within MPMX19_04378at 744.896 kb on - strand, within MPMX19_04378at 745.069 kb on + strand, within MPMX19_04378at 745.069 kb on + strand, within MPMX19_04378at 745.069 kb on + strand, within MPMX19_04378at 745.069 kb on + strand, within MPMX19_04378at 745.069 kb on + strand, within MPMX19_04378at 745.069 kb on + strand, within MPMX19_04378at 745.069 kb on + strand, within MPMX19_04378at 745.069 kb on + strand, within MPMX19_04378at 745.069 kb on + strand, within MPMX19_04378at 745.069 kb on + strand, within MPMX19_04378at 745.070 kb on - strand, within MPMX19_04378at 745.070 kb on - strand, within MPMX19_04378at 745.070 kb on - strand, within MPMX19_04378at 745.070 kb on - strand, within MPMX19_04378at 745.070 kb on - strand, within MPMX19_04378at 745.070 kb on - strand, within MPMX19_04378at 745.070 kb on - strand, within MPMX19_04378at 745.150 kb on + strand, within MPMX19_04378at 745.150 kb on + strand, within MPMX19_04378at 745.150 kb on + strand, within MPMX19_04378at 745.151 kb on - strand, within MPMX19_04378at 745.151 kb on - strand, within MPMX19_04378at 745.151 kb on - strand, within MPMX19_04378at 745.151 kb on - strand, within MPMX19_04378at 745.153 kb on + strand, within MPMX19_04378at 745.153 kb on + strand, within MPMX19_04378at 745.153 kb on + strand, within MPMX19_04378at 745.153 kb on + strand, within MPMX19_04378at 745.153 kb on + strand, within MPMX19_04378at 745.153 kb on + strand, within MPMX19_04378at 745.153 kb on + strand, within MPMX19_04378at 745.153 kb on + strand, within MPMX19_04378at 745.153 kb on + strand, within MPMX19_04378at 745.153 kb on + strand, within MPMX19_04378at 745.154 kb on - strand, within MPMX19_04378at 745.154 kb on - strand, within MPMX19_04378at 745.154 kb on - strand, within MPMX19_04378at 745.154 kb on - strand, within MPMX19_04378at 745.154 kb on - strand, within MPMX19_04378at 745.177 kb on + strand, within MPMX19_04378at 745.177 kb on + strand, within MPMX19_04378at 745.177 kb on + strand, within MPMX19_04378at 745.177 kb on + strand, within MPMX19_04378at 745.177 kb on + strand, within MPMX19_04378at 745.177 kb on + strand, within MPMX19_04378at 745.177 kb on + strand, within MPMX19_04378at 745.177 kb on + strand, within MPMX19_04378at 745.177 kb on + strand, within MPMX19_04378at 745.177 kb on + strand, within MPMX19_04378at 745.177 kb on + strand, within MPMX19_04378at 745.178 kb on - strand, within MPMX19_04378at 745.178 kb on - strand, within MPMX19_04378at 745.178 kb on - strand, within MPMX19_04378at 745.178 kb on - strand, within MPMX19_04378at 745.216 kb on + strand, within MPMX19_04378at 745.216 kb on + strand, within MPMX19_04378at 745.216 kb on + strand, within MPMX19_04378at 745.554 kb on + strand, within MPMX19_04379at 745.554 kb on + strand, within MPMX19_04379at 745.554 kb on + strand, within MPMX19_04379at 745.554 kb on + strand, within MPMX19_04379at 745.554 kb on + strand, within MPMX19_04379at 745.554 kb on + strand, within MPMX19_04379at 745.554 kb on + strand, within MPMX19_04379at 745.554 kb on + strand, within MPMX19_04379at 745.554 kb on + strand, within MPMX19_04379at 745.555 kb on - strand, within MPMX19_04379at 745.555 kb on - strand, within MPMX19_04379at 745.555 kb on - strand, within MPMX19_04379at 745.555 kb on - strand, within MPMX19_04379at 745.555 kb on - strand, within MPMX19_04379at 745.555 kb on - strand, within MPMX19_04379at 745.555 kb on - strand, within MPMX19_04379at 745.815 kb on + strand, within MPMX19_04379at 745.815 kb on + strand, within MPMX19_04379at 745.815 kb on + strand, within MPMX19_04379at 745.815 kb on + strand, within MPMX19_04379at 745.815 kb on + strand, within MPMX19_04379at 745.815 kb on + strand, within MPMX19_04379at 745.815 kb on + strand, within MPMX19_04379at 745.815 kb on + strand, within MPMX19_04379at 745.815 kb on + strand, within MPMX19_04379at 745.815 kb on + strand, within MPMX19_04379at 745.815 kb on + strand, within MPMX19_04379at 745.815 kb on + strand, within MPMX19_04379at 745.815 kb on + strand, within MPMX19_04379at 745.816 kb on - strand, within MPMX19_04379at 745.816 kb on - strand, within MPMX19_04379at 745.816 kb on - strand, within MPMX19_04379at 745.816 kb on - strand, within MPMX19_04379at 745.816 kb on - strand, within MPMX19_04379at 745.816 kb on - strand, within MPMX19_04379at 745.816 kb on - strand, within MPMX19_04379at 745.816 kb on - strand, within MPMX19_04379at 745.816 kb on - strand, within MPMX19_04379at 745.816 kb on - strand, within MPMX19_04379at 745.816 kb on - strand, within MPMX19_04379at 745.816 kb on - strand, within MPMX19_04379at 745.816 kb on - strand, within MPMX19_04379at 745.816 kb on - strand, within MPMX19_04379at 745.816 kb on - strand, within MPMX19_04379at 745.816 kb on - strand, within MPMX19_04379at 745.825 kb on - strand, within MPMX19_04379at 745.825 kb on - strand, within MPMX19_04379at 746.103 kb on + strand, within MPMX19_04379at 746.103 kb on + strand, within MPMX19_04379at 746.104 kb on - strand, within MPMX19_04379at 746.104 kb on - strand, within MPMX19_04379at 746.104 kb on - strand, within MPMX19_04379at 746.229 kb on + strand, within MPMX19_04379at 746.229 kb on + strand, within MPMX19_04379at 746.229 kb on + strand, within MPMX19_04379at 746.229 kb on + strand, within MPMX19_04379at 746.229 kb on + strand, within MPMX19_04379at 746.229 kb on + strand, within MPMX19_04379at 746.229 kb on + strand, within MPMX19_04379at 746.229 kb on + strand, within MPMX19_04379at 746.229 kb on + strand, within MPMX19_04379at 746.229 kb on + strand, within MPMX19_04379at 746.229 kb on + strand, within MPMX19_04379at 746.229 kb on + strand, within MPMX19_04379at 746.230 kb on - strand, within MPMX19_04379at 746.230 kb on - strand, within MPMX19_04379at 746.230 kb on - strand, within MPMX19_04379at 746.443 kb on - strandat 747.257 kb on + strand, within MPMX19_04380at 747.257 kb on + strand, within MPMX19_04380at 747.257 kb on + strand, within MPMX19_04380at 747.257 kb on + strand, within MPMX19_04380at 747.257 kb on + strand, within MPMX19_04380at 747.257 kb on + strand, within MPMX19_04380at 747.258 kb on - strand, within MPMX19_04380at 747.258 kb on - strand, within MPMX19_04380at 747.258 kb on - strand, within MPMX19_04380at 747.258 kb on - strand, within MPMX19_04380at 747.258 kb on - strand, within MPMX19_04380at 747.258 kb on - strand, within MPMX19_04380at 747.258 kb on - strand, within MPMX19_04380at 747.296 kb on + strand, within MPMX19_04380at 747.297 kb on - strand, within MPMX19_04380at 747.368 kb on + strand, within MPMX19_04380at 747.368 kb on + strand, within MPMX19_04380at 747.368 kb on + strand, within MPMX19_04380at 747.368 kb on + strand, within MPMX19_04380at 747.368 kb on + strand, within MPMX19_04380at 747.369 kb on - strand, within MPMX19_04380at 747.369 kb on - strand, within MPMX19_04380at 747.369 kb on - strand, within MPMX19_04380at 747.395 kb on - strand, within MPMX19_04380

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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744,502 + -0.4
744,502 + -0.5
744,526 + -1.0
744,526 + -0.1
744,526 + -1.3
744,526 + -0.4
744,526 + -2.3
744,526 + +1.3
744,526 + -0.1
744,527 - -1.3
744,527 - -1.9
744,527 - +0.0
744,527 - -1.9
744,527 - -0.4
744,527 - -1.1
744,527 - +0.6
744,527 - +1.2
744,527 - +0.1
744,527 - -0.2
744,527 - -0.3
744,527 - -1.1
744,527 - -0.4
744,527 - -1.4
744,527 - -0.7
744,607 + MPMX19_04378 0.14 -0.9
744,607 + MPMX19_04378 0.14 -0.5
744,607 + MPMX19_04378 0.14 +0.6
744,608 - MPMX19_04378 0.14 -1.1
744,608 - MPMX19_04378 0.14 -0.1
744,608 - MPMX19_04378 0.14 +0.3
744,616 + MPMX19_04378 0.15 -0.1
744,616 + MPMX19_04378 0.15 +0.2
744,616 + MPMX19_04378 0.15 -1.7
744,616 + MPMX19_04378 0.15 +0.1
744,617 - MPMX19_04378 0.15 +0.5
744,617 - MPMX19_04378 0.15 -1.3
744,617 - MPMX19_04378 0.15 -0.3
744,617 - MPMX19_04378 0.15 -1.2
744,617 - MPMX19_04378 0.15 -0.2
744,895 + MPMX19_04378 0.45 -0.1
744,895 + MPMX19_04378 0.45 -0.7
744,895 + MPMX19_04378 0.45 +0.9
744,895 + MPMX19_04378 0.45 +0.3
744,895 + MPMX19_04378 0.45 -1.9
744,896 - MPMX19_04378 0.46 -1.1
744,896 - MPMX19_04378 0.46 -1.0
744,896 - MPMX19_04378 0.46 -0.5
744,896 - MPMX19_04378 0.46 -0.6
744,896 - MPMX19_04378 0.46 +1.3
744,896 - MPMX19_04378 0.46 +0.2
744,896 - MPMX19_04378 0.46 +0.4
745,069 + MPMX19_04378 0.65 -1.7
745,069 + MPMX19_04378 0.65 +0.2
745,069 + MPMX19_04378 0.65 -0.7
745,069 + MPMX19_04378 0.65 +0.1
745,069 + MPMX19_04378 0.65 -0.4
745,069 + MPMX19_04378 0.65 -0.2
745,069 + MPMX19_04378 0.65 -1.2
745,069 + MPMX19_04378 0.65 -0.1
745,069 + MPMX19_04378 0.65 -0.7
745,069 + MPMX19_04378 0.65 -0.7
745,070 - MPMX19_04378 0.65 -0.4
745,070 - MPMX19_04378 0.65 -0.7
745,070 - MPMX19_04378 0.65 -1.2
745,070 - MPMX19_04378 0.65 -0.1
745,070 - MPMX19_04378 0.65 -1.1
745,070 - MPMX19_04378 0.65 -2.3
745,070 - MPMX19_04378 0.65 -1.3
745,150 + MPMX19_04378 0.74 -1.9
745,150 + MPMX19_04378 0.74 -1.0
745,150 + MPMX19_04378 0.74 -1.6
745,151 - MPMX19_04378 0.74 -1.1
745,151 - MPMX19_04378 0.74 -0.3
745,151 - MPMX19_04378 0.74 -1.7
745,151 - MPMX19_04378 0.74 +0.1
745,153 + MPMX19_04378 0.74 +0.3
745,153 + MPMX19_04378 0.74 -1.0
745,153 + MPMX19_04378 0.74 +0.0
745,153 + MPMX19_04378 0.74 -0.1
745,153 + MPMX19_04378 0.74 -1.4
745,153 + MPMX19_04378 0.74 -0.4
745,153 + MPMX19_04378 0.74 -0.4
745,153 + MPMX19_04378 0.74 +0.6
745,153 + MPMX19_04378 0.74 -0.7
745,153 + MPMX19_04378 0.74 +0.9
745,154 - MPMX19_04378 0.74 -1.7
745,154 - MPMX19_04378 0.74 -1.4
745,154 - MPMX19_04378 0.74 -0.7
745,154 - MPMX19_04378 0.74 -0.9
745,154 - MPMX19_04378 0.74 -0.3
745,177 + MPMX19_04378 0.77 -2.1
745,177 + MPMX19_04378 0.77 +0.6
745,177 + MPMX19_04378 0.77 +0.5
745,177 + MPMX19_04378 0.77 +0.3
745,177 + MPMX19_04378 0.77 -0.7
745,177 + MPMX19_04378 0.77 -0.4
745,177 + MPMX19_04378 0.77 -0.6
745,177 + MPMX19_04378 0.77 -0.5
745,177 + MPMX19_04378 0.77 +0.4
745,177 + MPMX19_04378 0.77 +0.3
745,177 + MPMX19_04378 0.77 -2.1
745,178 - MPMX19_04378 0.77 -0.6
745,178 - MPMX19_04378 0.77 -0.7
745,178 - MPMX19_04378 0.77 -0.1
745,178 - MPMX19_04378 0.77 -0.8
745,216 + MPMX19_04378 0.81 +0.1
745,216 + MPMX19_04378 0.81 +0.6
745,216 + MPMX19_04378 0.81 -0.5
745,554 + MPMX19_04379 0.15 -0.6
745,554 + MPMX19_04379 0.15 +0.6
745,554 + MPMX19_04379 0.15 +0.5
745,554 + MPMX19_04379 0.15 +0.3
745,554 + MPMX19_04379 0.15 -1.4
745,554 + MPMX19_04379 0.15 -0.1
745,554 + MPMX19_04379 0.15 +0.5
745,554 + MPMX19_04379 0.15 -1.3
745,554 + MPMX19_04379 0.15 -0.3
745,555 - MPMX19_04379 0.16 -1.1
745,555 - MPMX19_04379 0.16 +1.7
745,555 - MPMX19_04379 0.16 -0.1
745,555 - MPMX19_04379 0.16 -1.7
745,555 - MPMX19_04379 0.16 -0.7
745,555 - MPMX19_04379 0.16 -1.4
745,555 - MPMX19_04379 0.16 +0.3
745,815 + MPMX19_04379 0.39 -0.5
745,815 + MPMX19_04379 0.39 -0.7
745,815 + MPMX19_04379 0.39 -0.6
745,815 + MPMX19_04379 0.39 -0.4
745,815 + MPMX19_04379 0.39 -1.1
745,815 + MPMX19_04379 0.39 +0.6
745,815 + MPMX19_04379 0.39 -1.4
745,815 + MPMX19_04379 0.39 -0.1
745,815 + MPMX19_04379 0.39 -0.1
745,815 + MPMX19_04379 0.39 +0.3
745,815 + MPMX19_04379 0.39 -1.1
745,815 + MPMX19_04379 0.39 +0.4
745,815 + MPMX19_04379 0.39 +0.5
745,816 - MPMX19_04379 0.39 +1.5
745,816 - MPMX19_04379 0.39 +0.7
745,816 - MPMX19_04379 0.39 -0.8
745,816 - MPMX19_04379 0.39 +1.9
745,816 - MPMX19_04379 0.39 -0.1
745,816 - MPMX19_04379 0.39 -1.1
745,816 - MPMX19_04379 0.39 -0.1
745,816 - MPMX19_04379 0.39 +1.3
745,816 - MPMX19_04379 0.39 +0.5
745,816 - MPMX19_04379 0.39 -0.7
745,816 - MPMX19_04379 0.39 +0.3
745,816 - MPMX19_04379 0.39 -0.1
745,816 - MPMX19_04379 0.39 +0.9
745,816 - MPMX19_04379 0.39 +0.4
745,816 - MPMX19_04379 0.39 -0.7
745,816 - MPMX19_04379 0.39 -0.3
745,825 - MPMX19_04379 0.40 -0.9
745,825 - MPMX19_04379 0.40 -0.1
746,103 + MPMX19_04379 0.66 -0.1
746,103 + MPMX19_04379 0.66 -1.3
746,104 - MPMX19_04379 0.66 +0.0
746,104 - MPMX19_04379 0.66 -0.1
746,104 - MPMX19_04379 0.66 +0.2
746,229 + MPMX19_04379 0.77 -1.4
746,229 + MPMX19_04379 0.77 -0.7
746,229 + MPMX19_04379 0.77 -0.3
746,229 + MPMX19_04379 0.77 -1.3
746,229 + MPMX19_04379 0.77 +1.9
746,229 + MPMX19_04379 0.77 -0.4
746,229 + MPMX19_04379 0.77 -1.7
746,229 + MPMX19_04379 0.77 -0.9
746,229 + MPMX19_04379 0.77 -1.7
746,229 + MPMX19_04379 0.77 -1.5
746,229 + MPMX19_04379 0.77 -0.4
746,229 + MPMX19_04379 0.77 +0.3
746,230 - MPMX19_04379 0.77 -2.3
746,230 - MPMX19_04379 0.77 +0.9
746,230 - MPMX19_04379 0.77 +0.3
746,443 - -1.4
747,257 + MPMX19_04380 0.67 -0.4
747,257 + MPMX19_04380 0.67 -0.9
747,257 + MPMX19_04380 0.67 -0.5
747,257 + MPMX19_04380 0.67 -1.0
747,257 + MPMX19_04380 0.67 +0.5
747,257 + MPMX19_04380 0.67 -2.1
747,258 - MPMX19_04380 0.67 +0.9
747,258 - MPMX19_04380 0.67 -0.8
747,258 - MPMX19_04380 0.67 -0.7
747,258 - MPMX19_04380 0.67 +0.2
747,258 - MPMX19_04380 0.67 +0.1
747,258 - MPMX19_04380 0.67 -0.1
747,258 - MPMX19_04380 0.67 -0.1
747,296 + MPMX19_04380 0.72 +0.3
747,297 - MPMX19_04380 0.72 -0.7
747,368 + MPMX19_04380 0.80 -0.4
747,368 + MPMX19_04380 0.80 +0.9
747,368 + MPMX19_04380 0.80 -0.7
747,368 + MPMX19_04380 0.80 +0.2
747,368 + MPMX19_04380 0.80 -1.1
747,369 - MPMX19_04380 0.80 -0.7
747,369 - MPMX19_04380 0.80 -0.3
747,369 - MPMX19_04380 0.80 +0.9
747,395 - MPMX19_04380 0.83 +0.1

Or see this region's nucleotide sequence