Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04204

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04202 and MPMX19_04203 overlap by 4 nucleotidesMPMX19_04203 and MPMX19_04204 overlap by 4 nucleotidesMPMX19_04204 and MPMX19_04205 overlap by 4 nucleotidesMPMX19_04205 and MPMX19_04206 are separated by 39 nucleotides MPMX19_04202: MPMX19_04202 - Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system, at 536,167 to 536,928 _04202 MPMX19_04203: MPMX19_04203 - hypothetical protein, at 536,925 to 537,173 _04203 MPMX19_04204: MPMX19_04204 - D-alanine--D-alanyl carrier protein ligase, at 537,170 to 538,339 _04204 MPMX19_04205: MPMX19_04205 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 538,336 to 539,112 _04205 MPMX19_04206: MPMX19_04206 - 3-oxoacyl-[acyl-carrier-protein] synthase 3, at 539,152 to 540,210 _04206 Position (kb) 537 538 539Strain fitness (log2 ratio) -2 -1 0 1 2 3at 536.392 kb on + strand, within MPMX19_04202at 536.392 kb on + strand, within MPMX19_04202at 536.392 kb on + strand, within MPMX19_04202at 536.392 kb on + strand, within MPMX19_04202at 536.393 kb on - strand, within MPMX19_04202at 536.393 kb on - strand, within MPMX19_04202at 536.393 kb on - strand, within MPMX19_04202at 536.393 kb on - strand, within MPMX19_04202at 536.393 kb on - strand, within MPMX19_04202at 536.504 kb on + strand, within MPMX19_04202at 536.504 kb on + strand, within MPMX19_04202at 536.505 kb on - strand, within MPMX19_04202at 536.505 kb on - strand, within MPMX19_04202at 536.823 kb on + strand, within MPMX19_04202at 536.823 kb on + strand, within MPMX19_04202at 536.823 kb on + strand, within MPMX19_04202at 536.823 kb on + strand, within MPMX19_04202at 536.823 kb on + strand, within MPMX19_04202at 536.823 kb on + strand, within MPMX19_04202at 536.823 kb on + strand, within MPMX19_04202at 537.156 kb on + strandat 537.156 kb on + strandat 537.156 kb on + strandat 537.156 kb on + strandat 537.156 kb on + strandat 537.157 kb on - strandat 537.157 kb on - strandat 537.157 kb on - strandat 537.157 kb on - strandat 537.157 kb on - strandat 537.157 kb on - strandat 537.524 kb on + strand, within MPMX19_04204at 537.524 kb on + strand, within MPMX19_04204at 537.524 kb on + strand, within MPMX19_04204at 537.525 kb on - strand, within MPMX19_04204at 537.525 kb on - strand, within MPMX19_04204at 537.525 kb on - strand, within MPMX19_04204at 537.525 kb on - strand, within MPMX19_04204at 537.525 kb on - strand, within MPMX19_04204at 537.808 kb on + strand, within MPMX19_04204at 537.808 kb on + strand, within MPMX19_04204at 537.808 kb on + strand, within MPMX19_04204at 537.808 kb on + strand, within MPMX19_04204at 537.808 kb on + strand, within MPMX19_04204at 537.808 kb on + strand, within MPMX19_04204at 537.808 kb on + strand, within MPMX19_04204at 537.808 kb on + strand, within MPMX19_04204at 537.808 kb on + strand, within MPMX19_04204at 537.808 kb on + strand, within MPMX19_04204at 537.808 kb on + strand, within MPMX19_04204at 537.809 kb on - strand, within MPMX19_04204at 537.809 kb on - strand, within MPMX19_04204at 537.809 kb on - strand, within MPMX19_04204at 537.809 kb on - strand, within MPMX19_04204at 537.809 kb on - strand, within MPMX19_04204at 537.809 kb on - strand, within MPMX19_04204at 537.809 kb on - strand, within MPMX19_04204at 537.809 kb on - strand, within MPMX19_04204at 537.809 kb on - strand, within MPMX19_04204at 537.809 kb on - strand, within MPMX19_04204at 537.812 kb on + strand, within MPMX19_04204at 537.812 kb on + strand, within MPMX19_04204at 537.812 kb on + strand, within MPMX19_04204at 537.812 kb on + strand, within MPMX19_04204at 537.812 kb on + strand, within MPMX19_04204at 537.812 kb on + strand, within MPMX19_04204at 537.812 kb on + strand, within MPMX19_04204at 537.812 kb on + strand, within MPMX19_04204at 537.812 kb on + strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 538.291 kb on + strandat 538.292 kb on - strandat 538.813 kb on + strand, within MPMX19_04205at 538.813 kb on + strand, within MPMX19_04205at 538.814 kb on - strand, within MPMX19_04205at 538.814 kb on - strand, within MPMX19_04205at 538.814 kb on - strand, within MPMX19_04205at 538.814 kb on - strand, within MPMX19_04205at 538.831 kb on + strand, within MPMX19_04205at 538.832 kb on - strand, within MPMX19_04205at 538.832 kb on - strand, within MPMX19_04205at 538.927 kb on + strand, within MPMX19_04205at 538.928 kb on - strand, within MPMX19_04205at 538.928 kb on - strand, within MPMX19_04205at 538.928 kb on - strand, within MPMX19_04205at 539.085 kb on + strandat 539.085 kb on + strandat 539.085 kb on + strandat 539.085 kb on + strandat 539.085 kb on + strandat 539.085 kb on + strandat 539.085 kb on + strandat 539.085 kb on + strandat 539.085 kb on + strandat 539.085 kb on + strandat 539.085 kb on + strandat 539.085 kb on + strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.103 kb on + strandat 539.103 kb on + strandat 539.103 kb on + strandat 539.103 kb on + strandat 539.103 kb on + strandat 539.103 kb on + strandat 539.103 kb on + strandat 539.104 kb on - strandat 539.104 kb on - strandat 539.104 kb on - strandat 539.104 kb on - strandat 539.104 kb on - strandat 539.104 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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536,392 + MPMX19_04202 0.30 +0.3
536,392 + MPMX19_04202 0.30 +0.3
536,392 + MPMX19_04202 0.30 -1.4
536,392 + MPMX19_04202 0.30 +1.2
536,393 - MPMX19_04202 0.30 -0.3
536,393 - MPMX19_04202 0.30 -1.7
536,393 - MPMX19_04202 0.30 -1.4
536,393 - MPMX19_04202 0.30 -0.2
536,393 - MPMX19_04202 0.30 -1.1
536,504 + MPMX19_04202 0.44 +0.3
536,504 + MPMX19_04202 0.44 +0.3
536,505 - MPMX19_04202 0.44 -0.7
536,505 - MPMX19_04202 0.44 +0.9
536,823 + MPMX19_04202 0.86 +0.9
536,823 + MPMX19_04202 0.86 -1.0
536,823 + MPMX19_04202 0.86 +0.0
536,823 + MPMX19_04202 0.86 -0.1
536,823 + MPMX19_04202 0.86 -0.9
536,823 + MPMX19_04202 0.86 +0.8
536,823 + MPMX19_04202 0.86 +0.1
537,156 + +1.2
537,156 + +1.3
537,156 + -1.8
537,156 + -0.9
537,156 + -1.9
537,157 - -0.1
537,157 - -0.1
537,157 - +1.2
537,157 - +1.4
537,157 - -0.3
537,157 - +0.6
537,524 + MPMX19_04204 0.30 +1.5
537,524 + MPMX19_04204 0.30 -0.2
537,524 + MPMX19_04204 0.30 -0.7
537,525 - MPMX19_04204 0.30 -0.1
537,525 - MPMX19_04204 0.30 +0.7
537,525 - MPMX19_04204 0.30 -0.1
537,525 - MPMX19_04204 0.30 +1.3
537,525 - MPMX19_04204 0.30 +0.3
537,808 + MPMX19_04204 0.55 -1.1
537,808 + MPMX19_04204 0.55 +0.9
537,808 + MPMX19_04204 0.55 -2.1
537,808 + MPMX19_04204 0.55 -0.4
537,808 + MPMX19_04204 0.55 -0.5
537,808 + MPMX19_04204 0.55 -1.9
537,808 + MPMX19_04204 0.55 +1.2
537,808 + MPMX19_04204 0.55 +0.8
537,808 + MPMX19_04204 0.55 +0.9
537,808 + MPMX19_04204 0.55 -0.7
537,808 + MPMX19_04204 0.55 -1.4
537,809 - MPMX19_04204 0.55 +0.9
537,809 - MPMX19_04204 0.55 -1.9
537,809 - MPMX19_04204 0.55 -0.8
537,809 - MPMX19_04204 0.55 -0.5
537,809 - MPMX19_04204 0.55 -0.4
537,809 - MPMX19_04204 0.55 +0.8
537,809 - MPMX19_04204 0.55 -0.2
537,809 - MPMX19_04204 0.55 +0.7
537,809 - MPMX19_04204 0.55 +0.1
537,809 - MPMX19_04204 0.55 +0.3
537,812 + MPMX19_04204 0.55 -0.4
537,812 + MPMX19_04204 0.55 +0.9
537,812 + MPMX19_04204 0.55 -0.1
537,812 + MPMX19_04204 0.55 -1.4
537,812 + MPMX19_04204 0.55 -0.7
537,812 + MPMX19_04204 0.55 -0.1
537,812 + MPMX19_04204 0.55 -0.7
537,812 + MPMX19_04204 0.55 +0.9
537,812 + MPMX19_04204 0.55 +0.9
537,813 - MPMX19_04204 0.55 +3.5
537,813 - MPMX19_04204 0.55 +0.6
537,813 - MPMX19_04204 0.55 -0.8
537,813 - MPMX19_04204 0.55 +2.5
537,813 - MPMX19_04204 0.55 -0.2
537,813 - MPMX19_04204 0.55 +1.0
537,813 - MPMX19_04204 0.55 +0.7
537,813 - MPMX19_04204 0.55 -0.1
537,813 - MPMX19_04204 0.55 -1.4
537,813 - MPMX19_04204 0.55 +1.5
537,813 - MPMX19_04204 0.55 +0.2
537,813 - MPMX19_04204 0.55 +1.2
537,813 - MPMX19_04204 0.55 -0.1
537,813 - MPMX19_04204 0.55 -1.3
537,813 - MPMX19_04204 0.55 -1.2
537,813 - MPMX19_04204 0.55 +0.4
537,813 - MPMX19_04204 0.55 -0.9
537,813 - MPMX19_04204 0.55 -0.3
537,813 - MPMX19_04204 0.55 +2.3
538,291 + -0.1
538,292 - +0.9
538,813 + MPMX19_04205 0.61 +1.5
538,813 + MPMX19_04205 0.61 +0.3
538,814 - MPMX19_04205 0.62 -0.5
538,814 - MPMX19_04205 0.62 +0.2
538,814 - MPMX19_04205 0.62 +0.2
538,814 - MPMX19_04205 0.62 -0.7
538,831 + MPMX19_04205 0.64 -0.9
538,832 - MPMX19_04205 0.64 -1.7
538,832 - MPMX19_04205 0.64 -0.7
538,927 + MPMX19_04205 0.76 -0.7
538,928 - MPMX19_04205 0.76 -1.2
538,928 - MPMX19_04205 0.76 +0.5
538,928 - MPMX19_04205 0.76 +0.5
539,085 + -0.4
539,085 + -1.9
539,085 + +2.3
539,085 + +0.5
539,085 + +0.6
539,085 + -1.5
539,085 + +0.9
539,085 + +0.1
539,085 + +0.1
539,085 + +1.9
539,085 + +1.2
539,085 + -0.2
539,086 - -1.1
539,086 - -0.9
539,086 - +0.1
539,086 - -0.1
539,086 - -0.1
539,086 - +0.5
539,086 - -0.1
539,086 - +0.6
539,086 - +0.8
539,086 - -0.7
539,086 - -0.1
539,086 - +1.2
539,086 - -0.4
539,103 + +0.0
539,103 + -0.1
539,103 + +0.8
539,103 + +0.9
539,103 + -0.7
539,103 + +0.9
539,103 + -0.5
539,104 - -0.1
539,104 - -1.1
539,104 - -0.8
539,104 - +0.4
539,104 - +0.3
539,104 - +0.3

Or see this region's nucleotide sequence