Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03461 and MPMX19_03462 are separated by 392 nucleotides MPMX19_03462 and MPMX19_03463 overlap by 8 nucleotides MPMX19_03463 and MPMX19_03464 are separated by 106 nucleotides
MPMX19_03461: MPMX19_03461 - Regulatory protein AtoC, at 870,498 to 871,919
_03461
MPMX19_03462: MPMX19_03462 - Acetate CoA-transferase subunit alpha, at 872,312 to 872,974
_03462
MPMX19_03463: MPMX19_03463 - Butyrate--acetoacetate CoA-transferase subunit B, at 872,967 to 873,623
_03463
MPMX19_03464: MPMX19_03464 - Putative short-chain fatty acid transporter, at 873,730 to 875,103
_03464
Position (kb) 872
873 Strain fitness (log2 ratio) -2
-1
0
1 at 871.353 kb on - strand, within MPMX19_03461 at 871.431 kb on + strand, within MPMX19_03461 at 871.432 kb on - strand, within MPMX19_03461 at 871.432 kb on - strand, within MPMX19_03461 at 871.590 kb on + strand, within MPMX19_03461 at 871.591 kb on - strand, within MPMX19_03461 at 871.591 kb on - strand, within MPMX19_03461 at 871.890 kb on + strand at 871.890 kb on + strand at 871.890 kb on + strand at 871.890 kb on + strand at 871.890 kb on + strand at 871.891 kb on - strand at 871.892 kb on + strand at 871.892 kb on + strand at 871.892 kb on + strand at 871.892 kb on + strand at 871.892 kb on + strand at 871.893 kb on - strand at 871.893 kb on - strand at 871.893 kb on - strand at 871.893 kb on - strand at 871.905 kb on + strand at 871.906 kb on - strand at 871.930 kb on + strand at 871.930 kb on + strand at 871.931 kb on - strand at 872.103 kb on + strand at 872.104 kb on - strand at 872.114 kb on + strand at 872.114 kb on + strand at 872.115 kb on - strand at 872.116 kb on + strand at 872.317 kb on + strand at 872.318 kb on - strand at 872.318 kb on - strand at 872.729 kb on + strand, within MPMX19_03462 at 872.730 kb on + strand, within MPMX19_03462 at 872.730 kb on - strand, within MPMX19_03462 at 872.730 kb on - strand, within MPMX19_03462 at 872.730 kb on - strand, within MPMX19_03462 at 872.789 kb on + strand, within MPMX19_03462 at 872.789 kb on + strand, within MPMX19_03462 at 872.789 kb on + strand, within MPMX19_03462 at 872.789 kb on + strand, within MPMX19_03462 at 872.789 kb on + strand, within MPMX19_03462 at 872.789 kb on + strand, within MPMX19_03462 at 872.790 kb on - strand, within MPMX19_03462 at 872.790 kb on - strand, within MPMX19_03462 at 873.829 kb on + strand at 873.829 kb on + strand at 873.830 kb on - strand at 873.830 kb on - strand at 873.830 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 871,353 - MPMX19_03461 0.60 +0.2 871,431 + MPMX19_03461 0.66 -0.1 871,432 - MPMX19_03461 0.66 -0.4 871,432 - MPMX19_03461 0.66 -2.0 871,590 + MPMX19_03461 0.77 -1.1 871,591 - MPMX19_03461 0.77 -0.8 871,591 - MPMX19_03461 0.77 +0.0 871,890 + +0.2 871,890 + -2.0 871,890 + +0.7 871,890 + -0.4 871,890 + -0.4 871,891 - +1.6 871,892 + +0.6 871,892 + +0.8 871,892 + +1.1 871,892 + +0.5 871,892 + -1.5 871,893 - -0.8 871,893 - -0.8 871,893 - -0.2 871,893 - +0.1 871,905 + +0.3 871,906 - +0.2 871,930 + -1.3 871,930 + +1.2 871,931 - -0.2 872,103 + -1.6 872,104 - -0.8 872,114 + +0.6 872,114 + -0.8 872,115 - -0.5 872,116 + -0.5 872,317 + -0.1 872,318 - +0.7 872,318 - +0.8 872,729 + MPMX19_03462 0.63 -0.0 872,730 + MPMX19_03462 0.63 -0.1 872,730 - MPMX19_03462 0.63 -1.1 872,730 - MPMX19_03462 0.63 -0.4 872,730 - MPMX19_03462 0.63 -1.3 872,789 + MPMX19_03462 0.72 -0.0 872,789 + MPMX19_03462 0.72 -2.0 872,789 + MPMX19_03462 0.72 -0.4 872,789 + MPMX19_03462 0.72 -1.4 872,789 + MPMX19_03462 0.72 -1.7 872,789 + MPMX19_03462 0.72 -1.0 872,790 - MPMX19_03462 0.72 +0.5 872,790 - MPMX19_03462 0.72 -0.2 873,829 + -0.8 873,829 + +0.2 873,830 - -0.6 873,830 - +0.9 873,830 - +0.4
Or see this region's nucleotide sequence