Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03328

Experiment: NF_with_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03325 and MPMX19_03326 are separated by 155 nucleotidesMPMX19_03326 and MPMX19_03327 are separated by 16 nucleotidesMPMX19_03327 and MPMX19_03328 overlap by 50 nucleotidesMPMX19_03328 and MPMX19_03329 are separated by 63 nucleotides MPMX19_03325: MPMX19_03325 - hypothetical protein, at 676,588 to 677,742 _03325 MPMX19_03326: MPMX19_03326 - hypothetical protein, at 677,898 to 678,302 _03326 MPMX19_03327: MPMX19_03327 - hypothetical protein, at 678,319 to 678,723 _03327 MPMX19_03328: MPMX19_03328 - hypothetical protein, at 678,674 to 679,411 _03328 MPMX19_03329: MPMX19_03329 - hypothetical protein, at 679,475 to 679,906 _03329 Position (kb) 678 679 680Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 677.850 kb on + strandat 677.851 kb on - strandat 677.961 kb on + strand, within MPMX19_03326at 677.961 kb on + strand, within MPMX19_03326at 677.961 kb on + strand, within MPMX19_03326at 677.961 kb on + strand, within MPMX19_03326at 677.961 kb on + strand, within MPMX19_03326at 677.961 kb on + strand, within MPMX19_03326at 677.961 kb on + strand, within MPMX19_03326at 677.961 kb on + strand, within MPMX19_03326at 677.961 kb on + strand, within MPMX19_03326at 677.961 kb on + strand, within MPMX19_03326at 677.961 kb on + strand, within MPMX19_03326at 677.962 kb on - strand, within MPMX19_03326at 677.962 kb on - strand, within MPMX19_03326at 677.962 kb on - strand, within MPMX19_03326at 677.962 kb on - strand, within MPMX19_03326at 677.962 kb on - strand, within MPMX19_03326at 677.962 kb on - strand, within MPMX19_03326at 677.982 kb on + strand, within MPMX19_03326at 677.982 kb on + strand, within MPMX19_03326at 677.983 kb on - strand, within MPMX19_03326at 677.983 kb on - strand, within MPMX19_03326at 677.983 kb on - strand, within MPMX19_03326at 677.985 kb on + strand, within MPMX19_03326at 677.985 kb on + strand, within MPMX19_03326at 677.985 kb on + strand, within MPMX19_03326at 677.986 kb on - strand, within MPMX19_03326at 677.986 kb on - strand, within MPMX19_03326at 677.986 kb on - strand, within MPMX19_03326at 677.986 kb on - strand, within MPMX19_03326at 677.986 kb on - strand, within MPMX19_03326at 677.986 kb on - strand, within MPMX19_03326at 678.259 kb on - strand, within MPMX19_03326at 678.334 kb on + strandat 678.351 kb on - strandat 678.351 kb on - strandat 678.395 kb on - strand, within MPMX19_03327at 678.400 kb on + strand, within MPMX19_03327at 678.401 kb on - strand, within MPMX19_03327at 678.401 kb on - strand, within MPMX19_03327at 678.401 kb on - strand, within MPMX19_03327at 678.401 kb on - strand, within MPMX19_03327at 678.478 kb on + strand, within MPMX19_03327at 678.478 kb on + strand, within MPMX19_03327at 678.479 kb on - strand, within MPMX19_03327at 678.488 kb on - strand, within MPMX19_03327at 678.550 kb on + strand, within MPMX19_03327at 678.551 kb on - strand, within MPMX19_03327at 678.559 kb on + strand, within MPMX19_03327at 678.560 kb on - strand, within MPMX19_03327at 678.560 kb on - strand, within MPMX19_03327at 678.560 kb on - strand, within MPMX19_03327at 678.560 kb on - strand, within MPMX19_03327at 678.560 kb on - strand, within MPMX19_03327at 678.616 kb on + strand, within MPMX19_03327at 678.616 kb on + strand, within MPMX19_03327at 678.616 kb on + strand, within MPMX19_03327at 678.616 kb on + strand, within MPMX19_03327at 678.616 kb on + strand, within MPMX19_03327at 678.616 kb on + strand, within MPMX19_03327at 678.616 kb on + strand, within MPMX19_03327at 678.616 kb on + strand, within MPMX19_03327at 678.617 kb on - strand, within MPMX19_03327at 678.617 kb on - strand, within MPMX19_03327at 678.617 kb on - strand, within MPMX19_03327at 678.617 kb on - strand, within MPMX19_03327at 678.617 kb on - strand, within MPMX19_03327at 678.834 kb on + strand, within MPMX19_03328at 678.834 kb on + strand, within MPMX19_03328at 678.835 kb on - strand, within MPMX19_03328at 678.835 kb on - strand, within MPMX19_03328at 678.835 kb on - strand, within MPMX19_03328at 678.835 kb on - strand, within MPMX19_03328at 678.835 kb on - strand, within MPMX19_03328at 678.835 kb on - strand, within MPMX19_03328at 678.840 kb on + strand, within MPMX19_03328at 678.840 kb on + strand, within MPMX19_03328at 678.841 kb on - strand, within MPMX19_03328at 678.841 kb on - strand, within MPMX19_03328at 678.921 kb on + strand, within MPMX19_03328at 678.921 kb on + strand, within MPMX19_03328at 679.002 kb on + strand, within MPMX19_03328at 679.002 kb on + strand, within MPMX19_03328at 679.002 kb on + strand, within MPMX19_03328at 679.002 kb on + strand, within MPMX19_03328at 679.003 kb on - strand, within MPMX19_03328at 679.003 kb on - strand, within MPMX19_03328at 679.003 kb on - strand, within MPMX19_03328at 679.294 kb on - strand, within MPMX19_03328at 679.400 kb on + strandat 679.400 kb on + strandat 679.400 kb on + strandat 679.400 kb on + strandat 679.400 kb on + strandat 679.400 kb on + strandat 679.400 kb on + strandat 679.401 kb on - strandat 679.401 kb on - strandat 679.401 kb on - strandat 679.401 kb on - strandat 679.401 kb on - strandat 679.405 kb on + strandat 679.405 kb on + strandat 679.406 kb on - strandat 679.728 kb on + strand, within MPMX19_03329at 679.729 kb on - strand, within MPMX19_03329at 679.729 kb on - strand, within MPMX19_03329at 679.831 kb on + strand, within MPMX19_03329at 679.832 kb on - strand, within MPMX19_03329at 679.833 kb on + strand, within MPMX19_03329at 679.833 kb on + strand, within MPMX19_03329at 679.833 kb on + strand, within MPMX19_03329at 679.834 kb on - strand, within MPMX19_03329at 679.834 kb on - strand, within MPMX19_03329at 679.834 kb on - strand, within MPMX19_03329at 679.938 kb on - strandat 679.938 kb on - strandat 679.938 kb on - strandat 679.959 kb on + strandat 679.960 kb on - strandat 679.960 kb on - strandat 680.039 kb on - strandat 680.065 kb on + strandat 680.065 kb on + strandat 680.065 kb on + strandat 680.066 kb on - strandat 680.066 kb on - strandat 680.066 kb on - strandat 680.066 kb on - strandat 680.066 kb on - strandat 680.102 kb on + strandat 680.103 kb on - strandat 680.273 kb on - strandat 680.333 kb on - strandat 680.376 kb on + strandat 680.377 kb on - strandat 680.377 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
remove
677,850 + -1.4
677,851 - -1.5
677,961 + MPMX19_03326 0.16 -0.3
677,961 + MPMX19_03326 0.16 -0.1
677,961 + MPMX19_03326 0.16 -2.2
677,961 + MPMX19_03326 0.16 -0.1
677,961 + MPMX19_03326 0.16 +0.4
677,961 + MPMX19_03326 0.16 +0.1
677,961 + MPMX19_03326 0.16 -0.5
677,961 + MPMX19_03326 0.16 +0.2
677,961 + MPMX19_03326 0.16 -2.0
677,961 + MPMX19_03326 0.16 -0.4
677,961 + MPMX19_03326 0.16 +0.4
677,962 - MPMX19_03326 0.16 +0.9
677,962 - MPMX19_03326 0.16 -0.1
677,962 - MPMX19_03326 0.16 +0.6
677,962 - MPMX19_03326 0.16 +1.4
677,962 - MPMX19_03326 0.16 -1.7
677,962 - MPMX19_03326 0.16 +0.3
677,982 + MPMX19_03326 0.21 -0.8
677,982 + MPMX19_03326 0.21 -0.2
677,983 - MPMX19_03326 0.21 -1.1
677,983 - MPMX19_03326 0.21 -1.1
677,983 - MPMX19_03326 0.21 -1.4
677,985 + MPMX19_03326 0.21 -2.4
677,985 + MPMX19_03326 0.21 +0.8
677,985 + MPMX19_03326 0.21 +0.2
677,986 - MPMX19_03326 0.22 -1.1
677,986 - MPMX19_03326 0.22 -0.5
677,986 - MPMX19_03326 0.22 +0.5
677,986 - MPMX19_03326 0.22 +0.4
677,986 - MPMX19_03326 0.22 -1.6
677,986 - MPMX19_03326 0.22 +1.2
678,259 - MPMX19_03326 0.89 -0.4
678,334 + -0.7
678,351 - -2.0
678,351 - -0.3
678,395 - MPMX19_03327 0.19 -0.4
678,400 + MPMX19_03327 0.20 +1.6
678,401 - MPMX19_03327 0.20 -1.1
678,401 - MPMX19_03327 0.20 +1.2
678,401 - MPMX19_03327 0.20 -1.4
678,401 - MPMX19_03327 0.20 +0.8
678,478 + MPMX19_03327 0.39 +2.8
678,478 + MPMX19_03327 0.39 -1.5
678,479 - MPMX19_03327 0.40 -1.6
678,488 - MPMX19_03327 0.42 -0.1
678,550 + MPMX19_03327 0.57 -0.3
678,551 - MPMX19_03327 0.57 -1.3
678,559 + MPMX19_03327 0.59 -0.8
678,560 - MPMX19_03327 0.60 -0.4
678,560 - MPMX19_03327 0.60 +0.2
678,560 - MPMX19_03327 0.60 +1.8
678,560 - MPMX19_03327 0.60 -0.5
678,560 - MPMX19_03327 0.60 +0.6
678,616 + MPMX19_03327 0.73 -0.4
678,616 + MPMX19_03327 0.73 -0.8
678,616 + MPMX19_03327 0.73 -1.1
678,616 + MPMX19_03327 0.73 +1.8
678,616 + MPMX19_03327 0.73 -0.2
678,616 + MPMX19_03327 0.73 -0.1
678,616 + MPMX19_03327 0.73 -1.9
678,616 + MPMX19_03327 0.73 -1.4
678,617 - MPMX19_03327 0.74 -1.1
678,617 - MPMX19_03327 0.74 -1.0
678,617 - MPMX19_03327 0.74 +0.1
678,617 - MPMX19_03327 0.74 -0.6
678,617 - MPMX19_03327 0.74 -0.0
678,834 + MPMX19_03328 0.22 -0.4
678,834 + MPMX19_03328 0.22 -2.0
678,835 - MPMX19_03328 0.22 -0.8
678,835 - MPMX19_03328 0.22 -0.3
678,835 - MPMX19_03328 0.22 -0.3
678,835 - MPMX19_03328 0.22 -1.4
678,835 - MPMX19_03328 0.22 -1.6
678,835 - MPMX19_03328 0.22 -1.6
678,840 + MPMX19_03328 0.22 -0.8
678,840 + MPMX19_03328 0.22 -0.8
678,841 - MPMX19_03328 0.23 -1.0
678,841 - MPMX19_03328 0.23 -2.0
678,921 + MPMX19_03328 0.33 -2.3
678,921 + MPMX19_03328 0.33 +0.2
679,002 + MPMX19_03328 0.44 -1.1
679,002 + MPMX19_03328 0.44 +0.2
679,002 + MPMX19_03328 0.44 +0.2
679,002 + MPMX19_03328 0.44 -0.6
679,003 - MPMX19_03328 0.45 -0.8
679,003 - MPMX19_03328 0.45 +0.4
679,003 - MPMX19_03328 0.45 -0.2
679,294 - MPMX19_03328 0.84 -0.4
679,400 + -1.0
679,400 + -3.1
679,400 + +0.7
679,400 + +0.0
679,400 + -1.4
679,400 + +0.0
679,400 + -0.8
679,401 - +0.4
679,401 - +1.2
679,401 - -2.1
679,401 - +2.3
679,401 - -1.8
679,405 + +0.3
679,405 + -1.0
679,406 - +0.9
679,728 + MPMX19_03329 0.59 +0.2
679,729 - MPMX19_03329 0.59 +0.8
679,729 - MPMX19_03329 0.59 -0.4
679,831 + MPMX19_03329 0.82 -1.5
679,832 - MPMX19_03329 0.83 -0.4
679,833 + MPMX19_03329 0.83 -1.4
679,833 + MPMX19_03329 0.83 -0.5
679,833 + MPMX19_03329 0.83 -1.0
679,834 - MPMX19_03329 0.83 +0.4
679,834 - MPMX19_03329 0.83 +0.6
679,834 - MPMX19_03329 0.83 -0.1
679,938 - -0.9
679,938 - -1.1
679,938 - -0.6
679,959 + -1.1
679,960 - -0.4
679,960 - -0.8
680,039 - +0.2
680,065 + -1.3
680,065 + -0.4
680,065 + -0.1
680,066 - +0.9
680,066 - -0.4
680,066 - +0.2
680,066 - -0.4
680,066 - -0.9
680,102 + +0.1
680,103 - -0.8
680,273 - -0.7
680,333 - -0.6
680,376 + -0.6
680,377 - -0.4
680,377 - -0.4

Or see this region's nucleotide sequence