Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03275

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03274 and MPMX19_03275 are separated by 159 nucleotidesMPMX19_03275 and MPMX19_03276 are separated by 160 nucleotidesMPMX19_03276 and MPMX19_03277 are separated by 128 nucleotides MPMX19_03274: MPMX19_03274 - hypothetical protein, at 619,947 to 620,942 _03274 MPMX19_03275: MPMX19_03275 - HTH-type transcriptional regulator PgrR, at 621,102 to 622,043 _03275 MPMX19_03276: MPMX19_03276 - hypothetical protein, at 622,204 to 622,644 _03276 MPMX19_03277: MPMX19_03277 - hypothetical protein, at 622,773 to 623,816 _03277 Position (kb) 621 622 623Strain fitness (log2 ratio) -2 -1 0 1at 620.151 kb on + strand, within MPMX19_03274at 620.151 kb on + strand, within MPMX19_03274at 620.215 kb on + strand, within MPMX19_03274at 620.215 kb on + strand, within MPMX19_03274at 620.215 kb on + strand, within MPMX19_03274at 620.317 kb on + strand, within MPMX19_03274at 620.318 kb on - strand, within MPMX19_03274at 620.318 kb on - strand, within MPMX19_03274at 620.318 kb on - strand, within MPMX19_03274at 620.563 kb on + strand, within MPMX19_03274at 620.564 kb on - strand, within MPMX19_03274at 620.788 kb on + strand, within MPMX19_03274at 620.840 kb on + strand, within MPMX19_03274at 620.840 kb on + strand, within MPMX19_03274at 620.841 kb on - strand, within MPMX19_03274at 620.841 kb on - strand, within MPMX19_03274at 620.841 kb on - strand, within MPMX19_03274at 620.841 kb on - strand, within MPMX19_03274at 620.841 kb on - strand, within MPMX19_03274at 620.841 kb on - strand, within MPMX19_03274at 621.022 kb on + strandat 621.022 kb on + strandat 621.022 kb on + strandat 621.022 kb on + strandat 621.022 kb on + strandat 621.022 kb on + strandat 621.294 kb on + strand, within MPMX19_03275at 621.294 kb on + strand, within MPMX19_03275at 621.294 kb on + strand, within MPMX19_03275at 621.294 kb on + strand, within MPMX19_03275at 621.294 kb on + strand, within MPMX19_03275at 621.294 kb on + strand, within MPMX19_03275at 621.295 kb on - strand, within MPMX19_03275at 621.295 kb on - strand, within MPMX19_03275at 621.295 kb on - strand, within MPMX19_03275at 621.295 kb on - strand, within MPMX19_03275at 621.597 kb on + strand, within MPMX19_03275at 621.597 kb on + strand, within MPMX19_03275at 621.597 kb on + strand, within MPMX19_03275at 621.598 kb on - strand, within MPMX19_03275at 621.612 kb on + strand, within MPMX19_03275at 621.612 kb on + strand, within MPMX19_03275at 621.613 kb on - strand, within MPMX19_03275at 621.613 kb on - strand, within MPMX19_03275at 622.099 kb on + strandat 622.528 kb on + strand, within MPMX19_03276at 622.528 kb on + strand, within MPMX19_03276at 622.528 kb on + strand, within MPMX19_03276at 622.528 kb on + strand, within MPMX19_03276at 622.908 kb on + strand, within MPMX19_03277at 622.908 kb on + strand, within MPMX19_03277at 622.909 kb on - strand, within MPMX19_03277at 622.909 kb on - strand, within MPMX19_03277at 622.959 kb on + strand, within MPMX19_03277at 622.959 kb on + strand, within MPMX19_03277at 622.959 kb on + strand, within MPMX19_03277at 622.960 kb on - strand, within MPMX19_03277at 622.960 kb on - strand, within MPMX19_03277

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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620,151 + MPMX19_03274 0.20 +0.2
620,151 + MPMX19_03274 0.20 +0.5
620,215 + MPMX19_03274 0.27 -0.8
620,215 + MPMX19_03274 0.27 -1.0
620,215 + MPMX19_03274 0.27 -0.7
620,317 + MPMX19_03274 0.37 +1.2
620,318 - MPMX19_03274 0.37 +1.6
620,318 - MPMX19_03274 0.37 +0.1
620,318 - MPMX19_03274 0.37 -0.1
620,563 + MPMX19_03274 0.62 +0.2
620,564 - MPMX19_03274 0.62 -0.4
620,788 + MPMX19_03274 0.84 -1.0
620,840 + MPMX19_03274 0.90 -0.0
620,840 + MPMX19_03274 0.90 -0.9
620,841 - MPMX19_03274 0.90 -0.4
620,841 - MPMX19_03274 0.90 +0.4
620,841 - MPMX19_03274 0.90 -0.6
620,841 - MPMX19_03274 0.90 +0.0
620,841 - MPMX19_03274 0.90 +1.2
620,841 - MPMX19_03274 0.90 -1.2
621,022 + +1.2
621,022 + +1.2
621,022 + +0.2
621,022 + -0.0
621,022 + +1.2
621,022 + +0.1
621,294 + MPMX19_03275 0.20 -0.1
621,294 + MPMX19_03275 0.20 +1.2
621,294 + MPMX19_03275 0.20 +1.2
621,294 + MPMX19_03275 0.20 +0.1
621,294 + MPMX19_03275 0.20 -0.1
621,294 + MPMX19_03275 0.20 -0.1
621,295 - MPMX19_03275 0.20 +1.3
621,295 - MPMX19_03275 0.20 -0.4
621,295 - MPMX19_03275 0.20 -0.8
621,295 - MPMX19_03275 0.20 -0.2
621,597 + MPMX19_03275 0.53 -1.8
621,597 + MPMX19_03275 0.53 -0.8
621,597 + MPMX19_03275 0.53 +0.0
621,598 - MPMX19_03275 0.53 -1.1
621,612 + MPMX19_03275 0.54 +1.4
621,612 + MPMX19_03275 0.54 -0.6
621,613 - MPMX19_03275 0.54 +0.9
621,613 - MPMX19_03275 0.54 +0.2
622,099 + -0.8
622,528 + MPMX19_03276 0.73 -0.3
622,528 + MPMX19_03276 0.73 +0.2
622,528 + MPMX19_03276 0.73 -0.4
622,528 + MPMX19_03276 0.73 +0.8
622,908 + MPMX19_03277 0.13 -0.8
622,908 + MPMX19_03277 0.13 -0.7
622,909 - MPMX19_03277 0.13 +0.0
622,909 - MPMX19_03277 0.13 -2.0
622,959 + MPMX19_03277 0.18 -1.8
622,959 + MPMX19_03277 0.18 -0.4
622,959 + MPMX19_03277 0.18 +0.2
622,960 - MPMX19_03277 0.18 +1.0
622,960 - MPMX19_03277 0.18 +0.1

Or see this region's nucleotide sequence