Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03125

Experiment: NF_with_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03123 and MPMX19_03124 overlap by 4 nucleotidesMPMX19_03124 and MPMX19_03125 are separated by 16 nucleotidesMPMX19_03125 and MPMX19_03126 are separated by 20 nucleotidesMPMX19_03126 and MPMX19_03127 overlap by 20 nucleotides MPMX19_03123: MPMX19_03123 - Citrate lyase acyl carrier protein, at 411,223 to 411,519 _03123 MPMX19_03124: MPMX19_03124 - Citrate lyase subunit beta, at 411,516 to 412,388 _03124 MPMX19_03125: MPMX19_03125 - Citrate lyase alpha chain, at 412,405 to 413,907 _03125 MPMX19_03126: MPMX19_03126 - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, at 413,928 to 414,449 _03126 MPMX19_03127: MPMX19_03127 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase, at 414,430 to 415,404 _03127 Position (kb) 412 413 414Strain fitness (log2 ratio) -2 -1 0 1 2at 411.585 kb on + strandat 411.585 kb on + strandat 411.585 kb on + strandat 411.585 kb on + strandat 411.585 kb on + strandat 411.585 kb on + strandat 411.585 kb on + strandat 411.586 kb on - strandat 411.586 kb on - strandat 411.586 kb on - strandat 411.586 kb on - strandat 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 412.032 kb on + strand, within MPMX19_03124at 412.032 kb on + strand, within MPMX19_03124at 412.032 kb on + strand, within MPMX19_03124at 412.032 kb on + strand, within MPMX19_03124at 412.032 kb on + strand, within MPMX19_03124at 412.033 kb on - strand, within MPMX19_03124at 412.033 kb on - strand, within MPMX19_03124at 412.033 kb on - strand, within MPMX19_03124at 412.033 kb on - strand, within MPMX19_03124at 412.033 kb on - strand, within MPMX19_03124at 412.212 kb on + strand, within MPMX19_03124at 412.212 kb on + strand, within MPMX19_03124at 412.239 kb on + strand, within MPMX19_03124at 412.239 kb on + strand, within MPMX19_03124at 412.239 kb on + strand, within MPMX19_03124at 412.240 kb on - strand, within MPMX19_03124at 412.240 kb on - strand, within MPMX19_03124at 412.240 kb on - strand, within MPMX19_03124at 412.474 kb on + strandat 412.474 kb on + strandat 412.475 kb on - strandat 412.704 kb on + strand, within MPMX19_03125at 412.704 kb on + strand, within MPMX19_03125at 412.732 kb on + strand, within MPMX19_03125at 412.732 kb on + strand, within MPMX19_03125at 412.732 kb on + strand, within MPMX19_03125at 412.732 kb on + strand, within MPMX19_03125at 412.732 kb on + strand, within MPMX19_03125at 412.732 kb on + strand, within MPMX19_03125at 412.732 kb on + strand, within MPMX19_03125at 412.732 kb on + strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.733 kb on - strand, within MPMX19_03125at 412.848 kb on + strand, within MPMX19_03125at 412.848 kb on + strand, within MPMX19_03125at 412.848 kb on + strand, within MPMX19_03125at 412.848 kb on + strand, within MPMX19_03125at 412.848 kb on + strand, within MPMX19_03125at 412.848 kb on + strand, within MPMX19_03125at 412.848 kb on + strand, within MPMX19_03125at 412.848 kb on + strand, within MPMX19_03125at 412.849 kb on - strand, within MPMX19_03125at 412.942 kb on + strand, within MPMX19_03125at 412.942 kb on + strand, within MPMX19_03125at 413.047 kb on + strand, within MPMX19_03125at 413.047 kb on + strand, within MPMX19_03125at 413.047 kb on + strand, within MPMX19_03125at 413.047 kb on + strand, within MPMX19_03125at 413.047 kb on + strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.048 kb on - strand, within MPMX19_03125at 413.162 kb on + strand, within MPMX19_03125at 413.162 kb on + strand, within MPMX19_03125at 413.162 kb on + strand, within MPMX19_03125at 413.162 kb on + strand, within MPMX19_03125at 413.162 kb on + strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.163 kb on - strand, within MPMX19_03125at 413.173 kb on + strand, within MPMX19_03125at 413.174 kb on - strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.248 kb on + strand, within MPMX19_03125at 413.249 kb on - strand, within MPMX19_03125at 413.249 kb on - strand, within MPMX19_03125at 413.249 kb on - strand, within MPMX19_03125at 413.249 kb on - strand, within MPMX19_03125at 413.249 kb on - strand, within MPMX19_03125at 413.425 kb on + strand, within MPMX19_03125at 413.426 kb on - strand, within MPMX19_03125at 413.452 kb on + strand, within MPMX19_03125at 413.452 kb on + strand, within MPMX19_03125at 413.452 kb on + strand, within MPMX19_03125at 413.452 kb on + strand, within MPMX19_03125at 413.453 kb on - strand, within MPMX19_03125at 413.453 kb on - strand, within MPMX19_03125at 413.453 kb on - strand, within MPMX19_03125at 413.939 kb on - strandat 414.189 kb on + strand, within MPMX19_03126at 414.189 kb on + strand, within MPMX19_03126at 414.189 kb on + strand, within MPMX19_03126at 414.189 kb on + strand, within MPMX19_03126at 414.189 kb on + strand, within MPMX19_03126at 414.190 kb on - strand, within MPMX19_03126at 414.190 kb on - strand, within MPMX19_03126at 414.190 kb on - strand, within MPMX19_03126at 414.190 kb on - strand, within MPMX19_03126at 414.190 kb on - strand, within MPMX19_03126at 414.435 kb on + strandat 414.436 kb on - strandat 414.436 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
remove
411,585 + -1.7
411,585 + -0.5
411,585 + +0.1
411,585 + -0.2
411,585 + -1.2
411,585 + -0.9
411,585 + -1.2
411,586 - +1.4
411,586 - +0.7
411,586 - -0.8
411,586 - -0.1
411,984 + MPMX19_03124 0.54 -0.7
411,984 + MPMX19_03124 0.54 -0.3
411,984 + MPMX19_03124 0.54 -2.2
411,984 + MPMX19_03124 0.54 +0.4
411,984 + MPMX19_03124 0.54 -0.6
411,984 + MPMX19_03124 0.54 -1.2
411,984 + MPMX19_03124 0.54 +1.4
411,984 + MPMX19_03124 0.54 +1.1
411,984 + MPMX19_03124 0.54 -1.2
411,984 + MPMX19_03124 0.54 -0.5
411,985 - MPMX19_03124 0.54 +0.8
411,985 - MPMX19_03124 0.54 -0.1
411,985 - MPMX19_03124 0.54 -1.0
411,985 - MPMX19_03124 0.54 -1.8
411,985 - MPMX19_03124 0.54 +0.5
411,985 - MPMX19_03124 0.54 +0.5
411,985 - MPMX19_03124 0.54 +0.3
412,032 + MPMX19_03124 0.59 +0.5
412,032 + MPMX19_03124 0.59 -0.7
412,032 + MPMX19_03124 0.59 -0.5
412,032 + MPMX19_03124 0.59 +1.8
412,032 + MPMX19_03124 0.59 -1.0
412,033 - MPMX19_03124 0.59 +0.1
412,033 - MPMX19_03124 0.59 -0.5
412,033 - MPMX19_03124 0.59 -2.1
412,033 - MPMX19_03124 0.59 -0.7
412,033 - MPMX19_03124 0.59 +1.1
412,212 + MPMX19_03124 0.80 -0.8
412,212 + MPMX19_03124 0.80 -1.5
412,239 + MPMX19_03124 0.83 +0.1
412,239 + MPMX19_03124 0.83 -0.9
412,239 + MPMX19_03124 0.83 +0.1
412,240 - MPMX19_03124 0.83 -0.1
412,240 - MPMX19_03124 0.83 -0.9
412,240 - MPMX19_03124 0.83 -1.0
412,474 + -2.2
412,474 + +1.1
412,475 - -0.2
412,704 + MPMX19_03125 0.20 -0.5
412,704 + MPMX19_03125 0.20 -1.9
412,732 + MPMX19_03125 0.22 -0.9
412,732 + MPMX19_03125 0.22 -1.2
412,732 + MPMX19_03125 0.22 +0.5
412,732 + MPMX19_03125 0.22 -0.1
412,732 + MPMX19_03125 0.22 -1.2
412,732 + MPMX19_03125 0.22 -1.4
412,732 + MPMX19_03125 0.22 +1.1
412,732 + MPMX19_03125 0.22 +0.9
412,733 - MPMX19_03125 0.22 +0.1
412,733 - MPMX19_03125 0.22 +1.1
412,733 - MPMX19_03125 0.22 -0.6
412,733 - MPMX19_03125 0.22 -0.7
412,733 - MPMX19_03125 0.22 +0.2
412,733 - MPMX19_03125 0.22 -1.2
412,733 - MPMX19_03125 0.22 -0.2
412,733 - MPMX19_03125 0.22 -0.0
412,733 - MPMX19_03125 0.22 -0.9
412,733 - MPMX19_03125 0.22 -0.8
412,733 - MPMX19_03125 0.22 -0.3
412,733 - MPMX19_03125 0.22 +0.1
412,733 - MPMX19_03125 0.22 -0.9
412,848 + MPMX19_03125 0.29 -0.2
412,848 + MPMX19_03125 0.29 +1.1
412,848 + MPMX19_03125 0.29 -0.4
412,848 + MPMX19_03125 0.29 -0.3
412,848 + MPMX19_03125 0.29 +0.2
412,848 + MPMX19_03125 0.29 -1.5
412,848 + MPMX19_03125 0.29 -0.5
412,848 + MPMX19_03125 0.29 -0.4
412,849 - MPMX19_03125 0.30 +0.7
412,942 + MPMX19_03125 0.36 +0.1
412,942 + MPMX19_03125 0.36 +0.7
413,047 + MPMX19_03125 0.43 -0.1
413,047 + MPMX19_03125 0.43 -1.9
413,047 + MPMX19_03125 0.43 +0.6
413,047 + MPMX19_03125 0.43 -2.4
413,047 + MPMX19_03125 0.43 -1.1
413,048 - MPMX19_03125 0.43 -1.1
413,048 - MPMX19_03125 0.43 -0.7
413,048 - MPMX19_03125 0.43 +0.2
413,048 - MPMX19_03125 0.43 +0.1
413,048 - MPMX19_03125 0.43 -0.8
413,048 - MPMX19_03125 0.43 +2.4
413,048 - MPMX19_03125 0.43 -1.5
413,048 - MPMX19_03125 0.43 -0.5
413,162 + MPMX19_03125 0.50 -1.5
413,162 + MPMX19_03125 0.50 +1.3
413,162 + MPMX19_03125 0.50 -1.2
413,162 + MPMX19_03125 0.50 -0.5
413,162 + MPMX19_03125 0.50 +0.1
413,163 - MPMX19_03125 0.50 -1.5
413,163 - MPMX19_03125 0.50 -1.5
413,163 - MPMX19_03125 0.50 -1.1
413,163 - MPMX19_03125 0.50 -0.3
413,163 - MPMX19_03125 0.50 +0.4
413,163 - MPMX19_03125 0.50 -1.1
413,163 - MPMX19_03125 0.50 -2.5
413,163 - MPMX19_03125 0.50 -1.2
413,163 - MPMX19_03125 0.50 -2.1
413,163 - MPMX19_03125 0.50 -1.9
413,173 + MPMX19_03125 0.51 +0.7
413,174 - MPMX19_03125 0.51 +0.5
413,248 + MPMX19_03125 0.56 +0.0
413,248 + MPMX19_03125 0.56 +0.4
413,248 + MPMX19_03125 0.56 -0.1
413,248 + MPMX19_03125 0.56 -1.1
413,248 + MPMX19_03125 0.56 -0.8
413,248 + MPMX19_03125 0.56 +1.7
413,248 + MPMX19_03125 0.56 +1.1
413,248 + MPMX19_03125 0.56 -0.9
413,248 + MPMX19_03125 0.56 -1.2
413,249 - MPMX19_03125 0.56 -0.1
413,249 - MPMX19_03125 0.56 +0.8
413,249 - MPMX19_03125 0.56 +0.4
413,249 - MPMX19_03125 0.56 +0.9
413,249 - MPMX19_03125 0.56 -0.2
413,425 + MPMX19_03125 0.68 +0.2
413,426 - MPMX19_03125 0.68 +1.4
413,452 + MPMX19_03125 0.70 +0.1
413,452 + MPMX19_03125 0.70 +0.2
413,452 + MPMX19_03125 0.70 -1.2
413,452 + MPMX19_03125 0.70 -0.6
413,453 - MPMX19_03125 0.70 -0.9
413,453 - MPMX19_03125 0.70 +0.1
413,453 - MPMX19_03125 0.70 -0.3
413,939 - +0.4
414,189 + MPMX19_03126 0.50 -1.9
414,189 + MPMX19_03126 0.50 -0.5
414,189 + MPMX19_03126 0.50 -0.8
414,189 + MPMX19_03126 0.50 -0.5
414,189 + MPMX19_03126 0.50 +1.5
414,190 - MPMX19_03126 0.50 -0.9
414,190 - MPMX19_03126 0.50 +0.6
414,190 - MPMX19_03126 0.50 -0.7
414,190 - MPMX19_03126 0.50 -0.1
414,190 - MPMX19_03126 0.50 -1.5
414,435 + -0.9
414,436 - -1.5
414,436 - -0.2

Or see this region's nucleotide sequence