Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03072 and MPMX19_03073 are separated by 39 nucleotides MPMX19_03073 and MPMX19_03074 are separated by 154 nucleotides MPMX19_03074 and MPMX19_03075 are separated by 91 nucleotides
MPMX19_03072: MPMX19_03072 - hypothetical protein, at 337,763 to 337,870
_03072
MPMX19_03073: MPMX19_03073 - hypothetical protein, at 337,910 to 338,584
_03073
MPMX19_03074: MPMX19_03074 - Vitamin B12 transporter BtuB, at 338,739 to 340,796
_03074
MPMX19_03075: MPMX19_03075 - hypothetical protein, at 340,888 to 342,252
_03075
Position (kb) 338
339
340
341 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 337.771 kb on + strand at 337.772 kb on - strand at 337.772 kb on - strand at 337.772 kb on - strand at 337.777 kb on + strand, within MPMX19_03072 at 337.777 kb on + strand, within MPMX19_03072 at 337.778 kb on - strand, within MPMX19_03072 at 337.868 kb on + strand at 337.868 kb on + strand at 337.868 kb on + strand at 337.868 kb on + strand at 337.868 kb on + strand at 337.869 kb on - strand at 337.869 kb on - strand at 337.869 kb on - strand at 337.879 kb on + strand at 337.879 kb on + strand at 337.928 kb on + strand at 337.928 kb on + strand at 337.928 kb on + strand at 337.928 kb on + strand at 337.928 kb on + strand at 337.929 kb on - strand at 337.929 kb on - strand at 337.972 kb on + strand at 338.027 kb on + strand, within MPMX19_03073 at 338.027 kb on + strand, within MPMX19_03073 at 338.465 kb on + strand, within MPMX19_03073 at 338.465 kb on + strand, within MPMX19_03073 at 338.465 kb on + strand, within MPMX19_03073 at 338.466 kb on - strand, within MPMX19_03073 at 338.466 kb on - strand, within MPMX19_03073 at 338.466 kb on - strand, within MPMX19_03073 at 338.723 kb on + strand at 338.763 kb on - strand at 339.027 kb on + strand, within MPMX19_03074 at 339.027 kb on + strand, within MPMX19_03074 at 339.027 kb on + strand, within MPMX19_03074 at 339.027 kb on + strand, within MPMX19_03074 at 339.028 kb on - strand, within MPMX19_03074 at 339.028 kb on - strand, within MPMX19_03074 at 339.028 kb on - strand, within MPMX19_03074 at 339.028 kb on - strand, within MPMX19_03074 at 339.029 kb on + strand, within MPMX19_03074 at 339.030 kb on - strand, within MPMX19_03074 at 339.084 kb on + strand, within MPMX19_03074 at 339.084 kb on + strand, within MPMX19_03074 at 339.084 kb on + strand, within MPMX19_03074 at 339.084 kb on + strand, within MPMX19_03074 at 339.084 kb on + strand, within MPMX19_03074 at 339.084 kb on + strand, within MPMX19_03074 at 339.084 kb on + strand, within MPMX19_03074 at 339.085 kb on - strand, within MPMX19_03074 at 339.085 kb on - strand, within MPMX19_03074 at 339.085 kb on - strand, within MPMX19_03074 at 339.085 kb on - strand, within MPMX19_03074 at 339.085 kb on - strand, within MPMX19_03074 at 339.085 kb on - strand, within MPMX19_03074 at 339.162 kb on + strand, within MPMX19_03074 at 339.162 kb on + strand, within MPMX19_03074 at 339.162 kb on + strand, within MPMX19_03074 at 339.162 kb on + strand, within MPMX19_03074 at 339.163 kb on - strand, within MPMX19_03074 at 339.303 kb on + strand, within MPMX19_03074 at 339.303 kb on + strand, within MPMX19_03074 at 339.303 kb on + strand, within MPMX19_03074 at 339.304 kb on - strand, within MPMX19_03074 at 339.304 kb on - strand, within MPMX19_03074 at 339.304 kb on - strand, within MPMX19_03074 at 339.304 kb on - strand, within MPMX19_03074 at 339.304 kb on - strand, within MPMX19_03074 at 339.336 kb on + strand, within MPMX19_03074 at 339.336 kb on + strand, within MPMX19_03074 at 339.336 kb on + strand, within MPMX19_03074 at 339.337 kb on - strand, within MPMX19_03074 at 339.337 kb on - strand, within MPMX19_03074 at 339.337 kb on - strand, within MPMX19_03074 at 339.337 kb on - strand, within MPMX19_03074 at 339.337 kb on - strand, within MPMX19_03074 at 339.337 kb on - strand, within MPMX19_03074 at 339.499 kb on - strand, within MPMX19_03074 at 339.499 kb on - strand, within MPMX19_03074 at 339.499 kb on - strand, within MPMX19_03074 at 339.576 kb on + strand, within MPMX19_03074 at 339.576 kb on + strand, within MPMX19_03074 at 339.576 kb on + strand, within MPMX19_03074 at 339.576 kb on + strand, within MPMX19_03074 at 339.577 kb on - strand, within MPMX19_03074 at 339.577 kb on - strand, within MPMX19_03074 at 339.592 kb on - strand, within MPMX19_03074 at 339.592 kb on - strand, within MPMX19_03074 at 339.612 kb on + strand, within MPMX19_03074 at 339.612 kb on + strand, within MPMX19_03074 at 339.612 kb on + strand, within MPMX19_03074 at 339.612 kb on + strand, within MPMX19_03074 at 339.613 kb on - strand, within MPMX19_03074 at 339.613 kb on - strand, within MPMX19_03074 at 339.613 kb on - strand, within MPMX19_03074 at 339.613 kb on - strand, within MPMX19_03074 at 339.649 kb on - strand, within MPMX19_03074 at 339.649 kb on - strand, within MPMX19_03074 at 339.666 kb on + strand, within MPMX19_03074 at 339.667 kb on - strand, within MPMX19_03074 at 339.669 kb on + strand, within MPMX19_03074 at 339.669 kb on + strand, within MPMX19_03074 at 339.669 kb on + strand, within MPMX19_03074 at 339.669 kb on + strand, within MPMX19_03074 at 339.669 kb on + strand, within MPMX19_03074 at 339.669 kb on + strand, within MPMX19_03074 at 339.670 kb on - strand, within MPMX19_03074 at 339.670 kb on - strand, within MPMX19_03074 at 339.670 kb on - strand, within MPMX19_03074 at 339.670 kb on - strand, within MPMX19_03074 at 339.670 kb on - strand, within MPMX19_03074 at 339.670 kb on - strand, within MPMX19_03074 at 339.693 kb on + strand, within MPMX19_03074 at 339.693 kb on + strand, within MPMX19_03074 at 339.693 kb on + strand, within MPMX19_03074 at 339.693 kb on + strand, within MPMX19_03074 at 339.693 kb on + strand, within MPMX19_03074 at 339.693 kb on + strand, within MPMX19_03074 at 339.693 kb on + strand, within MPMX19_03074 at 339.694 kb on - strand, within MPMX19_03074 at 339.750 kb on + strand, within MPMX19_03074 at 339.750 kb on + strand, within MPMX19_03074 at 339.750 kb on + strand, within MPMX19_03074 at 339.750 kb on + strand, within MPMX19_03074 at 339.750 kb on + strand, within MPMX19_03074 at 339.750 kb on + strand, within MPMX19_03074 at 339.751 kb on - strand, within MPMX19_03074 at 339.751 kb on - strand, within MPMX19_03074 at 339.751 kb on - strand, within MPMX19_03074 at 339.751 kb on - strand, within MPMX19_03074 at 339.751 kb on - strand, within MPMX19_03074 at 339.751 kb on - strand, within MPMX19_03074 at 339.751 kb on - strand, within MPMX19_03074 at 339.751 kb on - strand, within MPMX19_03074 at 339.751 kb on - strand, within MPMX19_03074 at 339.751 kb on - strand, within MPMX19_03074 at 339.751 kb on - strand, within MPMX19_03074 at 339.753 kb on + strand, within MPMX19_03074 at 339.754 kb on - strand, within MPMX19_03074 at 339.754 kb on - strand, within MPMX19_03074 at 339.754 kb on - strand, within MPMX19_03074 at 339.754 kb on - strand, within MPMX19_03074 at 339.754 kb on - strand, within MPMX19_03074 at 339.768 kb on + strand, within MPMX19_03074 at 339.768 kb on + strand, within MPMX19_03074 at 339.768 kb on + strand, within MPMX19_03074 at 339.769 kb on - strand, within MPMX19_03074 at 339.769 kb on - strand, within MPMX19_03074 at 339.769 kb on - strand, within MPMX19_03074 at 339.871 kb on - strand, within MPMX19_03074 at 340.050 kb on + strand, within MPMX19_03074 at 340.050 kb on + strand, within MPMX19_03074 at 340.051 kb on - strand, within MPMX19_03074 at 340.051 kb on - strand, within MPMX19_03074 at 340.098 kb on + strand, within MPMX19_03074 at 340.099 kb on - strand, within MPMX19_03074 at 340.099 kb on - strand, within MPMX19_03074 at 340.099 kb on - strand, within MPMX19_03074 at 340.236 kb on + strand, within MPMX19_03074 at 340.236 kb on + strand, within MPMX19_03074 at 340.236 kb on + strand, within MPMX19_03074 at 340.236 kb on + strand, within MPMX19_03074 at 340.236 kb on + strand, within MPMX19_03074 at 340.237 kb on - strand, within MPMX19_03074 at 340.237 kb on - strand, within MPMX19_03074 at 340.237 kb on - strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.446 kb on + strand, within MPMX19_03074 at 340.447 kb on - strand, within MPMX19_03074 at 340.447 kb on - strand, within MPMX19_03074 at 340.447 kb on - strand, within MPMX19_03074 at 340.447 kb on - strand, within MPMX19_03074 at 340.447 kb on - strand, within MPMX19_03074 at 340.641 kb on + strand at 340.641 kb on + strand at 340.641 kb on + strand at 340.642 kb on - strand at 340.668 kb on + strand at 340.668 kb on + strand at 340.668 kb on + strand at 340.669 kb on - strand at 340.669 kb on - strand at 340.728 kb on + strand at 340.728 kb on + strand at 340.728 kb on + strand at 340.728 kb on + strand at 340.728 kb on + strand at 340.729 kb on - strand at 340.729 kb on - strand at 340.729 kb on - strand at 340.729 kb on - strand at 340.729 kb on - strand at 340.729 kb on - strand at 340.812 kb on + strand at 340.812 kb on + strand at 340.812 kb on + strand at 340.813 kb on - strand at 340.813 kb on - strand at 340.849 kb on + strand at 340.851 kb on + strand at 340.863 kb on + strand at 340.865 kb on + strand at 340.889 kb on + strand at 340.890 kb on - strand at 341.027 kb on + strand, within MPMX19_03075 at 341.027 kb on + strand, within MPMX19_03075 at 341.028 kb on - strand, within MPMX19_03075 at 341.028 kb on - strand, within MPMX19_03075 at 341.028 kb on - strand, within MPMX19_03075 at 341.028 kb on - strand, within MPMX19_03075 at 341.028 kb on - strand, within MPMX19_03075 at 341.028 kb on - strand, within MPMX19_03075 at 341.164 kb on - strand, within MPMX19_03075 at 341.333 kb on + strand, within MPMX19_03075 at 341.333 kb on + strand, within MPMX19_03075 at 341.333 kb on + strand, within MPMX19_03075 at 341.333 kb on + strand, within MPMX19_03075 at 341.334 kb on - strand, within MPMX19_03075 at 341.334 kb on - strand, within MPMX19_03075 at 341.334 kb on - strand, within MPMX19_03075 at 341.334 kb on - strand, within MPMX19_03075 at 341.388 kb on + strand, within MPMX19_03075 at 341.389 kb on - strand, within MPMX19_03075
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 337,771 + -0.3 337,772 - -0.7 337,772 - +0.3 337,772 - -1.7 337,777 + MPMX19_03072 0.13 -1.5 337,777 + MPMX19_03072 0.13 -0.6 337,778 - MPMX19_03072 0.14 -0.6 337,868 + -0.0 337,868 + +0.5 337,868 + +1.9 337,868 + +0.2 337,868 + -0.9 337,869 - -0.5 337,869 - -1.1 337,869 - -1.7 337,879 + -0.2 337,879 + +1.5 337,928 + -0.2 337,928 + -0.3 337,928 + +0.1 337,928 + -0.2 337,928 + +0.1 337,929 - +0.3 337,929 - +0.9 337,972 + -0.5 338,027 + MPMX19_03073 0.17 -0.2 338,027 + MPMX19_03073 0.17 +0.4 338,465 + MPMX19_03073 0.82 +0.5 338,465 + MPMX19_03073 0.82 -0.3 338,465 + MPMX19_03073 0.82 +0.3 338,466 - MPMX19_03073 0.82 -0.4 338,466 - MPMX19_03073 0.82 -0.2 338,466 - MPMX19_03073 0.82 -0.7 338,723 + -0.8 338,763 - -0.6 339,027 + MPMX19_03074 0.14 -0.3 339,027 + MPMX19_03074 0.14 -0.4 339,027 + MPMX19_03074 0.14 -0.7 339,027 + MPMX19_03074 0.14 +0.4 339,028 - MPMX19_03074 0.14 +1.9 339,028 - MPMX19_03074 0.14 +0.3 339,028 - MPMX19_03074 0.14 -1.9 339,028 - MPMX19_03074 0.14 -1.5 339,029 + MPMX19_03074 0.14 -0.5 339,030 - MPMX19_03074 0.14 -1.5 339,084 + MPMX19_03074 0.17 +0.1 339,084 + MPMX19_03074 0.17 -0.5 339,084 + MPMX19_03074 0.17 +2.1 339,084 + MPMX19_03074 0.17 -2.0 339,084 + MPMX19_03074 0.17 -0.2 339,084 + MPMX19_03074 0.17 -1.1 339,084 + MPMX19_03074 0.17 -0.5 339,085 - MPMX19_03074 0.17 +1.5 339,085 - MPMX19_03074 0.17 -1.9 339,085 - MPMX19_03074 0.17 -0.5 339,085 - MPMX19_03074 0.17 -1.6 339,085 - MPMX19_03074 0.17 -0.8 339,085 - MPMX19_03074 0.17 -1.5 339,162 + MPMX19_03074 0.21 +1.5 339,162 + MPMX19_03074 0.21 -0.1 339,162 + MPMX19_03074 0.21 +1.1 339,162 + MPMX19_03074 0.21 -0.5 339,163 - MPMX19_03074 0.21 +0.8 339,303 + MPMX19_03074 0.27 -0.2 339,303 + MPMX19_03074 0.27 -0.8 339,303 + MPMX19_03074 0.27 -2.5 339,304 - MPMX19_03074 0.27 -1.2 339,304 - MPMX19_03074 0.27 -0.4 339,304 - MPMX19_03074 0.27 -0.7 339,304 - MPMX19_03074 0.27 -0.9 339,304 - MPMX19_03074 0.27 +1.7 339,336 + MPMX19_03074 0.29 -0.5 339,336 + MPMX19_03074 0.29 +0.7 339,336 + MPMX19_03074 0.29 -3.1 339,337 - MPMX19_03074 0.29 -0.7 339,337 - MPMX19_03074 0.29 -1.7 339,337 - MPMX19_03074 0.29 -1.7 339,337 - MPMX19_03074 0.29 -1.7 339,337 - MPMX19_03074 0.29 +0.6 339,337 - MPMX19_03074 0.29 +0.5 339,499 - MPMX19_03074 0.37 -0.2 339,499 - MPMX19_03074 0.37 +0.5 339,499 - MPMX19_03074 0.37 -1.7 339,576 + MPMX19_03074 0.41 -0.2 339,576 + MPMX19_03074 0.41 -2.3 339,576 + MPMX19_03074 0.41 +0.3 339,576 + MPMX19_03074 0.41 -1.5 339,577 - MPMX19_03074 0.41 -0.4 339,577 - MPMX19_03074 0.41 -0.6 339,592 - MPMX19_03074 0.41 -1.2 339,592 - MPMX19_03074 0.41 -0.9 339,612 + MPMX19_03074 0.42 -1.7 339,612 + MPMX19_03074 0.42 -0.2 339,612 + MPMX19_03074 0.42 -1.5 339,612 + MPMX19_03074 0.42 +0.6 339,613 - MPMX19_03074 0.42 -1.7 339,613 - MPMX19_03074 0.42 +0.5 339,613 - MPMX19_03074 0.42 -1.5 339,613 - MPMX19_03074 0.42 -2.1 339,649 - MPMX19_03074 0.44 +0.9 339,649 - MPMX19_03074 0.44 -0.5 339,666 + MPMX19_03074 0.45 -1.3 339,667 - MPMX19_03074 0.45 -1.0 339,669 + MPMX19_03074 0.45 -0.2 339,669 + MPMX19_03074 0.45 -0.6 339,669 + MPMX19_03074 0.45 +1.0 339,669 + MPMX19_03074 0.45 -0.9 339,669 + MPMX19_03074 0.45 +0.4 339,669 + MPMX19_03074 0.45 +0.1 339,670 - MPMX19_03074 0.45 +0.3 339,670 - MPMX19_03074 0.45 -0.2 339,670 - MPMX19_03074 0.45 -0.8 339,670 - MPMX19_03074 0.45 -0.4 339,670 - MPMX19_03074 0.45 -0.2 339,670 - MPMX19_03074 0.45 +0.1 339,693 + MPMX19_03074 0.46 -0.9 339,693 + MPMX19_03074 0.46 -1.1 339,693 + MPMX19_03074 0.46 +1.8 339,693 + MPMX19_03074 0.46 -1.2 339,693 + MPMX19_03074 0.46 +1.1 339,693 + MPMX19_03074 0.46 -1.7 339,693 + MPMX19_03074 0.46 -0.7 339,694 - MPMX19_03074 0.46 -1.1 339,750 + MPMX19_03074 0.49 -0.1 339,750 + MPMX19_03074 0.49 -0.9 339,750 + MPMX19_03074 0.49 -0.1 339,750 + MPMX19_03074 0.49 -0.7 339,750 + MPMX19_03074 0.49 +0.1 339,750 + MPMX19_03074 0.49 +1.1 339,751 - MPMX19_03074 0.49 -1.1 339,751 - MPMX19_03074 0.49 -1.2 339,751 - MPMX19_03074 0.49 -1.7 339,751 - MPMX19_03074 0.49 +1.1 339,751 - MPMX19_03074 0.49 +0.5 339,751 - MPMX19_03074 0.49 +0.4 339,751 - MPMX19_03074 0.49 -0.6 339,751 - MPMX19_03074 0.49 +0.3 339,751 - MPMX19_03074 0.49 +0.7 339,751 - MPMX19_03074 0.49 -1.5 339,751 - MPMX19_03074 0.49 -2.6 339,753 + MPMX19_03074 0.49 -1.5 339,754 - MPMX19_03074 0.49 -0.8 339,754 - MPMX19_03074 0.49 -0.9 339,754 - MPMX19_03074 0.49 +1.1 339,754 - MPMX19_03074 0.49 -0.7 339,754 - MPMX19_03074 0.49 -0.2 339,768 + MPMX19_03074 0.50 -0.1 339,768 + MPMX19_03074 0.50 -2.7 339,768 + MPMX19_03074 0.50 -2.5 339,769 - MPMX19_03074 0.50 -2.2 339,769 - MPMX19_03074 0.50 -0.6 339,769 - MPMX19_03074 0.50 -1.7 339,871 - MPMX19_03074 0.55 +0.1 340,050 + MPMX19_03074 0.64 -1.3 340,050 + MPMX19_03074 0.64 -2.3 340,051 - MPMX19_03074 0.64 -0.5 340,051 - MPMX19_03074 0.64 -1.1 340,098 + MPMX19_03074 0.66 +0.3 340,099 - MPMX19_03074 0.66 -0.3 340,099 - MPMX19_03074 0.66 +1.1 340,099 - MPMX19_03074 0.66 +0.3 340,236 + MPMX19_03074 0.73 -1.7 340,236 + MPMX19_03074 0.73 +0.8 340,236 + MPMX19_03074 0.73 +0.5 340,236 + MPMX19_03074 0.73 -1.1 340,236 + MPMX19_03074 0.73 -0.4 340,237 - MPMX19_03074 0.73 -0.9 340,237 - MPMX19_03074 0.73 +0.0 340,237 - MPMX19_03074 0.73 -0.9 340,446 + MPMX19_03074 0.83 -0.4 340,446 + MPMX19_03074 0.83 -1.1 340,446 + MPMX19_03074 0.83 -0.2 340,446 + MPMX19_03074 0.83 -0.4 340,446 + MPMX19_03074 0.83 -1.4 340,446 + MPMX19_03074 0.83 +0.1 340,446 + MPMX19_03074 0.83 -1.3 340,446 + MPMX19_03074 0.83 -0.2 340,446 + MPMX19_03074 0.83 -0.3 340,446 + MPMX19_03074 0.83 -0.4 340,446 + MPMX19_03074 0.83 -1.2 340,446 + MPMX19_03074 0.83 +1.1 340,446 + MPMX19_03074 0.83 -1.9 340,446 + MPMX19_03074 0.83 -1.2 340,446 + MPMX19_03074 0.83 +1.1 340,447 - MPMX19_03074 0.83 -0.4 340,447 - MPMX19_03074 0.83 -0.2 340,447 - MPMX19_03074 0.83 +1.7 340,447 - MPMX19_03074 0.83 +0.8 340,447 - MPMX19_03074 0.83 -1.4 340,641 + -0.2 340,641 + -0.5 340,641 + -0.3 340,642 - -0.9 340,668 + +0.1 340,668 + -0.3 340,668 + -0.5 340,669 - +0.1 340,669 - +0.1 340,728 + -1.5 340,728 + -0.2 340,728 + +0.3 340,728 + +0.7 340,728 + -0.2 340,729 - +0.5 340,729 - -2.2 340,729 - -0.3 340,729 - -1.2 340,729 - +0.1 340,729 - -2.9 340,812 + -1.2 340,812 + +0.5 340,812 + -0.7 340,813 - +0.1 340,813 - +0.3 340,849 + -0.9 340,851 + +0.1 340,863 + +1.1 340,865 + -0.4 340,889 + +1.1 340,890 - -0.3 341,027 + MPMX19_03075 0.10 +1.1 341,027 + MPMX19_03075 0.10 +0.8 341,028 - MPMX19_03075 0.10 -0.5 341,028 - MPMX19_03075 0.10 -0.5 341,028 - MPMX19_03075 0.10 -0.6 341,028 - MPMX19_03075 0.10 -0.6 341,028 - MPMX19_03075 0.10 -0.5 341,028 - MPMX19_03075 0.10 +1.1 341,164 - MPMX19_03075 0.20 +0.1 341,333 + MPMX19_03075 0.33 -0.9 341,333 + MPMX19_03075 0.33 -0.8 341,333 + MPMX19_03075 0.33 +0.1 341,333 + MPMX19_03075 0.33 -0.3 341,334 - MPMX19_03075 0.33 -0.1 341,334 - MPMX19_03075 0.33 -1.1 341,334 - MPMX19_03075 0.33 -1.9 341,334 - MPMX19_03075 0.33 -0.5 341,388 + MPMX19_03075 0.37 -0.5 341,389 - MPMX19_03075 0.37 +0.3
Or see this region's nucleotide sequence