Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02768 and MPMX19_02769 overlap by 4 nucleotides MPMX19_02769 and MPMX19_02770 are separated by 19 nucleotides
MPMX19_02768: MPMX19_02768 - Ribose operon repressor, at 40 to 1,014
_02768
MPMX19_02769: MPMX19_02769 - Ribokinase, at 1,011 to 1,937
_02769
MPMX19_02770: MPMX19_02770 - C4-dicarboxylic acid transporter DauA, at 1,957 to 3,696
_02770
Position (kb) 0
1
2 Strain fitness (log2 ratio) -2
-1
0
1
2 at 0.130 kb on + strand at 0.131 kb on - strand at 0.131 kb on - strand at 0.131 kb on - strand at 0.265 kb on + strand, within MPMX19_02768 at 0.266 kb on - strand, within MPMX19_02768 at 0.673 kb on + strand, within MPMX19_02768 at 0.838 kb on + strand, within MPMX19_02768 at 0.839 kb on - strand, within MPMX19_02768 at 0.839 kb on - strand, within MPMX19_02768 at 0.839 kb on - strand, within MPMX19_02768 at 0.839 kb on - strand, within MPMX19_02768 at 0.839 kb on - strand, within MPMX19_02768 at 1.028 kb on + strand at 1.029 kb on - strand at 1.029 kb on - strand at 1.068 kb on + strand at 1.068 kb on + strand at 1.117 kb on - strand, within MPMX19_02769 at 1.704 kb on + strand, within MPMX19_02769 at 1.704 kb on + strand, within MPMX19_02769 at 1.704 kb on + strand, within MPMX19_02769 at 1.704 kb on + strand, within MPMX19_02769 at 1.704 kb on + strand, within MPMX19_02769 at 1.705 kb on - strand, within MPMX19_02769 at 1.705 kb on - strand, within MPMX19_02769 at 1.705 kb on - strand, within MPMX19_02769 at 1.705 kb on - strand, within MPMX19_02769 at 1.705 kb on - strand, within MPMX19_02769 at 1.705 kb on - strand, within MPMX19_02769 at 1.705 kb on - strand, within MPMX19_02769 at 1.705 kb on - strand, within MPMX19_02769 at 1.958 kb on + strand at 1.959 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 130 + -0.3 131 - +0.1 131 - -1.1 131 - -0.7 265 + MPMX19_02768 0.23 +0.1 266 - MPMX19_02768 0.23 +0.6 673 + MPMX19_02768 0.65 -0.2 838 + MPMX19_02768 0.82 -0.2 839 - MPMX19_02768 0.82 -1.2 839 - MPMX19_02768 0.82 -1.0 839 - MPMX19_02768 0.82 -0.4 839 - MPMX19_02768 0.82 -0.8 839 - MPMX19_02768 0.82 -1.1 1,028 + -0.9 1,029 - +0.1 1,029 - +0.1 1,068 + -1.2 1,068 + +0.1 1,117 - MPMX19_02769 0.11 +0.1 1,704 + MPMX19_02769 0.75 -2.2 1,704 + MPMX19_02769 0.75 -0.2 1,704 + MPMX19_02769 0.75 -2.2 1,704 + MPMX19_02769 0.75 +2.7 1,704 + MPMX19_02769 0.75 -1.7 1,705 - MPMX19_02769 0.75 +0.1 1,705 - MPMX19_02769 0.75 +0.1 1,705 - MPMX19_02769 0.75 -0.3 1,705 - MPMX19_02769 0.75 +0.5 1,705 - MPMX19_02769 0.75 -0.8 1,705 - MPMX19_02769 0.75 +0.5 1,705 - MPMX19_02769 0.75 +0.1 1,705 - MPMX19_02769 0.75 -0.5 1,958 + -2.1 1,959 - -0.5
Or see this region's nucleotide sequence