Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02448

Experiment: NF_with_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_02447 and MPMX19_02448 overlap by 26 nucleotidesMPMX19_02448 and MPMX19_02449 are separated by 37 nucleotides MPMX19_02447: MPMX19_02447 - Peptide chain release factor RF1, at 2,567,720 to 2,568,805 _02447 MPMX19_02448: MPMX19_02448 - Glutamyl-tRNA reductase, at 2,568,780 to 2,570,111 _02448 MPMX19_02449: MPMX19_02449 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin), at 2,570,149 to 2,571,318 _02449 Position (kb) 2568 2569 2570 2571Strain fitness (log2 ratio) -2 -1 0 1at 2570.096 kb on - strandat 2570.096 kb on - strandat 2570.096 kb on - strandat 2570.150 kb on + strandat 2570.151 kb on - strandat 2570.151 kb on - strandat 2570.151 kb on - strandat 2570.151 kb on - strandat 2570.151 kb on - strandat 2570.151 kb on - strandat 2570.151 kb on - strandat 2570.151 kb on - strandat 2570.151 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
remove
2,570,096 - +0.0
2,570,096 - -1.0
2,570,096 - -0.6
2,570,150 + -0.0
2,570,151 - -0.2
2,570,151 - +0.6
2,570,151 - -1.0
2,570,151 - -2.3
2,570,151 - -0.8
2,570,151 - -0.6
2,570,151 - +0.4
2,570,151 - +0.2
2,570,151 - -0.2

Or see this region's nucleotide sequence