Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01874

Experiment: NF_with_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_01873 and MPMX19_01874 are separated by 4 nucleotidesMPMX19_01874 and MPMX19_01875 are separated by 31 nucleotidesMPMX19_01875 and MPMX19_01876 are separated by 5 nucleotides MPMX19_01873: MPMX19_01873 - Glycine--tRNA ligase alpha subunit, at 1,953,502 to 1,954,398 _01873 MPMX19_01874: MPMX19_01874 - Glycine--tRNA ligase beta subunit, at 1,954,403 to 1,956,490 _01874 MPMX19_01875: MPMX19_01875 - hypothetical protein, at 1,956,522 to 1,957,160 _01875 MPMX19_01876: MPMX19_01876 - Sensor histidine kinase RcsC, at 1,957,166 to 1,957,525 _01876 Position (kb) 1954 1955 1956 1957Strain fitness (log2 ratio) -2 -1 0 1at 1954.396 kb on + strandat 1956.524 kb on - strandat 1956.639 kb on + strand, within MPMX19_01875at 1956.639 kb on + strand, within MPMX19_01875at 1956.639 kb on + strand, within MPMX19_01875at 1956.639 kb on + strand, within MPMX19_01875at 1956.639 kb on + strand, within MPMX19_01875at 1956.639 kb on + strand, within MPMX19_01875at 1956.639 kb on + strand, within MPMX19_01875at 1956.639 kb on + strand, within MPMX19_01875at 1956.639 kb on + strand, within MPMX19_01875at 1956.640 kb on - strand, within MPMX19_01875at 1956.640 kb on - strand, within MPMX19_01875at 1956.697 kb on + strand, within MPMX19_01875at 1956.863 kb on + strand, within MPMX19_01875at 1956.863 kb on + strand, within MPMX19_01875at 1956.864 kb on - strand, within MPMX19_01875at 1957.362 kb on + strand, within MPMX19_01876at 1957.362 kb on + strand, within MPMX19_01876at 1957.362 kb on + strand, within MPMX19_01876at 1957.362 kb on + strand, within MPMX19_01876at 1957.362 kb on + strand, within MPMX19_01876at 1957.362 kb on + strand, within MPMX19_01876at 1957.362 kb on + strand, within MPMX19_01876at 1957.362 kb on + strand, within MPMX19_01876at 1957.362 kb on + strand, within MPMX19_01876at 1957.362 kb on + strand, within MPMX19_01876at 1957.362 kb on + strand, within MPMX19_01876at 1957.363 kb on - strand, within MPMX19_01876at 1957.363 kb on - strand, within MPMX19_01876at 1957.363 kb on - strand, within MPMX19_01876at 1957.363 kb on - strand, within MPMX19_01876at 1957.363 kb on - strand, within MPMX19_01876at 1957.363 kb on - strand, within MPMX19_01876at 1957.363 kb on - strand, within MPMX19_01876at 1957.363 kb on - strand, within MPMX19_01876at 1957.363 kb on - strand, within MPMX19_01876at 1957.363 kb on - strand, within MPMX19_01876at 1957.363 kb on - strand, within MPMX19_01876at 1957.363 kb on - strand, within MPMX19_01876at 1957.363 kb on - strand, within MPMX19_01876at 1957.363 kb on - strand, within MPMX19_01876at 1957.373 kb on - strand, within MPMX19_01876

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
remove
1,954,396 + +1.6
1,956,524 - -1.3
1,956,639 + MPMX19_01875 0.18 -0.7
1,956,639 + MPMX19_01875 0.18 -1.3
1,956,639 + MPMX19_01875 0.18 +0.4
1,956,639 + MPMX19_01875 0.18 +0.7
1,956,639 + MPMX19_01875 0.18 -1.0
1,956,639 + MPMX19_01875 0.18 -0.0
1,956,639 + MPMX19_01875 0.18 -0.0
1,956,639 + MPMX19_01875 0.18 -2.0
1,956,639 + MPMX19_01875 0.18 -0.7
1,956,640 - MPMX19_01875 0.18 +0.4
1,956,640 - MPMX19_01875 0.18 -0.8
1,956,697 + MPMX19_01875 0.27 -0.6
1,956,863 + MPMX19_01875 0.53 -0.6
1,956,863 + MPMX19_01875 0.53 -1.0
1,956,864 - MPMX19_01875 0.54 +0.4
1,957,362 + MPMX19_01876 0.54 -1.3
1,957,362 + MPMX19_01876 0.54 -1.6
1,957,362 + MPMX19_01876 0.54 +0.4
1,957,362 + MPMX19_01876 0.54 -0.6
1,957,362 + MPMX19_01876 0.54 -1.3
1,957,362 + MPMX19_01876 0.54 -1.0
1,957,362 + MPMX19_01876 0.54 -1.0
1,957,362 + MPMX19_01876 0.54 -1.8
1,957,362 + MPMX19_01876 0.54 -1.1
1,957,362 + MPMX19_01876 0.54 +0.3
1,957,362 + MPMX19_01876 0.54 +0.1
1,957,363 - MPMX19_01876 0.55 -0.6
1,957,363 - MPMX19_01876 0.55 -0.3
1,957,363 - MPMX19_01876 0.55 -0.0
1,957,363 - MPMX19_01876 0.55 +0.4
1,957,363 - MPMX19_01876 0.55 -0.6
1,957,363 - MPMX19_01876 0.55 -1.6
1,957,363 - MPMX19_01876 0.55 +0.3
1,957,363 - MPMX19_01876 0.55 +0.6
1,957,363 - MPMX19_01876 0.55 +0.1
1,957,363 - MPMX19_01876 0.55 -0.9
1,957,363 - MPMX19_01876 0.55 -0.3
1,957,363 - MPMX19_01876 0.55 -0.1
1,957,363 - MPMX19_01876 0.55 -1.3
1,957,363 - MPMX19_01876 0.55 -0.0
1,957,373 - MPMX19_01876 0.57 +0.2

Or see this region's nucleotide sequence