Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01098

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01096 and MPMX19_01097 are separated by 356 nucleotidesMPMX19_01097 and MPMX19_01098 are separated by 194 nucleotidesMPMX19_01098 and MPMX19_01099 are separated by 78 nucleotides MPMX19_01096: MPMX19_01096 - hypothetical protein, at 1,131,763 to 1,132,083 _01096 MPMX19_01097: MPMX19_01097 - hypothetical protein, at 1,132,440 to 1,132,811 _01097 MPMX19_01098: MPMX19_01098 - Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha, at 1,133,006 to 1,134,019 _01098 MPMX19_01099: MPMX19_01099 - 1-deoxy-D-xylulose-5-phosphate synthase, at 1,134,098 to 1,135,471 _01099 Position (kb) 1133 1134 1135Strain fitness (log2 ratio) -2 -1 0 1at 1132.138 kb on + strandat 1132.139 kb on - strandat 1132.139 kb on - strandat 1132.173 kb on + strandat 1132.173 kb on + strandat 1132.173 kb on + strandat 1132.173 kb on + strandat 1132.173 kb on + strandat 1132.173 kb on + strandat 1132.173 kb on + strandat 1132.174 kb on - strandat 1132.174 kb on - strandat 1132.174 kb on - strandat 1132.174 kb on - strandat 1132.174 kb on - strandat 1132.174 kb on - strandat 1132.174 kb on - strandat 1132.174 kb on - strandat 1132.174 kb on - strandat 1132.174 kb on - strandat 1132.174 kb on - strandat 1132.174 kb on - strandat 1132.222 kb on + strandat 1132.222 kb on + strandat 1132.222 kb on + strandat 1132.223 kb on - strandat 1132.223 kb on - strandat 1132.223 kb on - strandat 1132.223 kb on - strandat 1132.223 kb on - strandat 1132.223 kb on - strandat 1132.223 kb on - strandat 1132.223 kb on - strandat 1132.223 kb on - strandat 1132.336 kb on + strandat 1132.336 kb on + strandat 1132.336 kb on + strandat 1132.337 kb on - strandat 1132.762 kb on + strand, within MPMX19_01097at 1132.809 kb on + strandat 1132.810 kb on - strandat 1132.810 kb on - strandat 1132.810 kb on - strandat 1132.854 kb on - strandat 1132.897 kb on + strandat 1132.897 kb on + strandat 1132.897 kb on + strandat 1132.911 kb on + strandat 1132.911 kb on + strandat 1133.180 kb on + strand, within MPMX19_01098at 1134.035 kb on + strandat 1134.035 kb on + strandat 1134.035 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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1,132,138 + +0.3
1,132,139 - -0.2
1,132,139 - -0.7
1,132,173 + +0.1
1,132,173 + -1.7
1,132,173 + -0.9
1,132,173 + -1.1
1,132,173 + -0.0
1,132,173 + -2.2
1,132,173 + +0.8
1,132,174 - +0.2
1,132,174 - +0.6
1,132,174 - -0.1
1,132,174 - -1.5
1,132,174 - -0.4
1,132,174 - -0.1
1,132,174 - +0.2
1,132,174 - +0.2
1,132,174 - -1.0
1,132,174 - -0.9
1,132,174 - +1.1
1,132,174 - +0.3
1,132,222 + +0.7
1,132,222 + +0.3
1,132,222 + -1.2
1,132,223 - +0.8
1,132,223 - -1.2
1,132,223 - +0.3
1,132,223 - +0.7
1,132,223 - +0.1
1,132,223 - -0.9
1,132,223 - +0.3
1,132,223 - +0.8
1,132,223 - -0.9
1,132,336 + -0.3
1,132,336 + -0.7
1,132,336 + -1.1
1,132,337 - -2.2
1,132,762 + MPMX19_01097 0.87 -0.7
1,132,809 + -0.9
1,132,810 - -1.9
1,132,810 - -1.7
1,132,810 - -0.5
1,132,854 - -1.4
1,132,897 + -0.2
1,132,897 + -1.9
1,132,897 + +0.1
1,132,911 + +0.1
1,132,911 + +0.1
1,133,180 + MPMX19_01098 0.17 +0.1
1,134,035 + +0.3
1,134,035 + +0.3
1,134,035 + +1.1

Or see this region's nucleotide sequence