Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00833

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00831 and MPMX19_00832 are separated by 37 nucleotidesMPMX19_00832 and MPMX19_00833 are separated by 304 nucleotidesMPMX19_00833 and MPMX19_00834 are separated by 192 nucleotides MPMX19_00831: MPMX19_00831 - GMP synthase [glutamine-hydrolyzing], at 862,138 to 863,706 _00831 MPMX19_00832: MPMX19_00832 - hypothetical protein, at 863,744 to 864,322 _00832 MPMX19_00833: MPMX19_00833 - Lipopolysaccharide export system permease protein LptG, at 864,627 to 865,721 _00833 MPMX19_00834: MPMX19_00834 - Chaperone SurA, at 865,914 to 867,374 _00834 Position (kb) 864 865 866Strain fitness (log2 ratio) -2 -1 0 1at 863.803 kb on - strand, within MPMX19_00832at 863.877 kb on + strand, within MPMX19_00832at 863.877 kb on + strand, within MPMX19_00832at 863.877 kb on + strand, within MPMX19_00832at 863.877 kb on + strand, within MPMX19_00832at 863.878 kb on - strand, within MPMX19_00832at 863.878 kb on - strand, within MPMX19_00832at 863.878 kb on - strand, within MPMX19_00832at 863.985 kb on + strand, within MPMX19_00832at 864.003 kb on - strand, within MPMX19_00832at 864.009 kb on + strand, within MPMX19_00832at 864.231 kb on + strand, within MPMX19_00832at 864.231 kb on + strand, within MPMX19_00832at 864.231 kb on + strand, within MPMX19_00832at 864.231 kb on + strand, within MPMX19_00832at 864.232 kb on - strand, within MPMX19_00832at 864.232 kb on - strand, within MPMX19_00832at 864.232 kb on - strand, within MPMX19_00832at 864.232 kb on - strand, within MPMX19_00832at 864.232 kb on - strand, within MPMX19_00832at 864.232 kb on - strand, within MPMX19_00832at 864.417 kb on + strandat 864.417 kb on + strandat 864.417 kb on + strandat 864.417 kb on + strandat 864.417 kb on + strandat 864.418 kb on - strandat 864.418 kb on - strandat 864.418 kb on - strandat 864.418 kb on - strandat 864.508 kb on + strandat 864.508 kb on + strandat 864.508 kb on + strandat 864.508 kb on + strandat 864.508 kb on + strandat 864.630 kb on + strandat 864.630 kb on + strandat 864.630 kb on + strandat 864.630 kb on + strandat 865.791 kb on + strandat 865.807 kb on - strandat 865.807 kb on - strandat 865.825 kb on + strandat 865.825 kb on + strandat 865.825 kb on + strandat 865.826 kb on - strandat 865.826 kb on - strandat 865.878 kb on + strandat 865.878 kb on + strandat 865.878 kb on + strandat 865.878 kb on + strandat 865.878 kb on + strandat 865.878 kb on + strandat 865.878 kb on + strandat 865.881 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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863,803 - MPMX19_00832 0.10 -1.0
863,877 + MPMX19_00832 0.23 +1.0
863,877 + MPMX19_00832 0.23 -0.3
863,877 + MPMX19_00832 0.23 +1.0
863,877 + MPMX19_00832 0.23 -1.9
863,878 - MPMX19_00832 0.23 -1.0
863,878 - MPMX19_00832 0.23 -0.2
863,878 - MPMX19_00832 0.23 +0.7
863,985 + MPMX19_00832 0.42 -0.6
864,003 - MPMX19_00832 0.45 -0.2
864,009 + MPMX19_00832 0.46 -1.3
864,231 + MPMX19_00832 0.84 -2.6
864,231 + MPMX19_00832 0.84 -0.8
864,231 + MPMX19_00832 0.84 +0.8
864,231 + MPMX19_00832 0.84 -1.3
864,232 - MPMX19_00832 0.84 +0.4
864,232 - MPMX19_00832 0.84 +0.0
864,232 - MPMX19_00832 0.84 -1.0
864,232 - MPMX19_00832 0.84 -1.0
864,232 - MPMX19_00832 0.84 -0.2
864,232 - MPMX19_00832 0.84 +0.1
864,417 + -0.3
864,417 + +0.6
864,417 + -1.6
864,417 + -1.2
864,417 + -0.7
864,418 - -0.8
864,418 - +0.0
864,418 - -1.0
864,418 - -1.8
864,508 + -0.7
864,508 + +0.2
864,508 + -1.0
864,508 + +0.8
864,508 + -0.2
864,630 + +0.7
864,630 + -1.0
864,630 + +0.0
864,630 + -1.7
865,791 + -2.3
865,807 - +0.0
865,807 - +0.4
865,825 + -0.8
865,825 + -0.7
865,825 + -0.6
865,826 - +0.0
865,826 - -2.0
865,878 + -1.8
865,878 + -1.1
865,878 + -1.7
865,878 + +0.0
865,878 + -2.0
865,878 + +0.0
865,878 + -0.3
865,881 + -0.6

Or see this region's nucleotide sequence