Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00714 and MPMX19_00715 are separated by 126 nucleotides MPMX19_00715 and MPMX19_00716 are separated by 104 nucleotides
MPMX19_00714: MPMX19_00714 - Ferrous-iron efflux pump FieF, at 736,479 to 737,414
_00714
MPMX19_00715: MPMX19_00715 - hypothetical protein, at 737,541 to 739,052
_00715
MPMX19_00716: MPMX19_00716 - Hydrogenase maturation factor HypD, at 739,157 to 740,269
_00716
Position (kb) 737
738
739
740 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.599 kb on + strand, within MPMX19_00714 at 736.599 kb on + strand, within MPMX19_00714 at 736.599 kb on + strand, within MPMX19_00714 at 736.599 kb on + strand, within MPMX19_00714 at 736.599 kb on + strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.600 kb on - strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.968 kb on + strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 736.969 kb on - strand, within MPMX19_00714 at 737.457 kb on + strand at 737.458 kb on - strand at 737.467 kb on + strand at 737.526 kb on + strand at 737.531 kb on + strand at 737.531 kb on + strand at 737.532 kb on - strand at 737.532 kb on - strand at 737.532 kb on - strand at 737.536 kb on + strand at 737.592 kb on + strand at 737.606 kb on + strand at 737.606 kb on + strand at 737.607 kb on - strand at 737.607 kb on - strand at 737.609 kb on + strand at 737.609 kb on + strand at 737.609 kb on + strand at 737.609 kb on + strand at 737.609 kb on + strand at 737.609 kb on + strand at 737.609 kb on + strand at 737.609 kb on + strand at 737.610 kb on - strand at 737.610 kb on - strand at 737.610 kb on - strand at 737.610 kb on - strand at 737.610 kb on - strand at 737.610 kb on - strand at 738.651 kb on + strand, within MPMX19_00715 at 738.651 kb on + strand, within MPMX19_00715 at 738.651 kb on + strand, within MPMX19_00715 at 738.652 kb on - strand, within MPMX19_00715 at 738.652 kb on - strand, within MPMX19_00715 at 738.652 kb on - strand, within MPMX19_00715 at 738.652 kb on - strand, within MPMX19_00715 at 738.652 kb on - strand, within MPMX19_00715 at 738.652 kb on - strand, within MPMX19_00715 at 738.696 kb on + strand, within MPMX19_00715 at 738.696 kb on + strand, within MPMX19_00715 at 738.696 kb on + strand, within MPMX19_00715 at 738.696 kb on + strand, within MPMX19_00715 at 738.697 kb on - strand, within MPMX19_00715 at 738.795 kb on + strand, within MPMX19_00715 at 738.795 kb on + strand, within MPMX19_00715 at 738.795 kb on + strand, within MPMX19_00715 at 738.795 kb on + strand, within MPMX19_00715 at 738.795 kb on + strand, within MPMX19_00715 at 738.795 kb on + strand, within MPMX19_00715 at 738.796 kb on - strand, within MPMX19_00715 at 738.796 kb on - strand, within MPMX19_00715 at 738.796 kb on - strand, within MPMX19_00715 at 738.796 kb on - strand, within MPMX19_00715 at 738.942 kb on + strand at 738.942 kb on + strand at 738.942 kb on + strand at 738.943 kb on - strand at 739.041 kb on + strand at 739.041 kb on + strand at 739.041 kb on + strand at 739.041 kb on + strand at 739.041 kb on + strand at 739.041 kb on + strand at 739.041 kb on + strand at 739.041 kb on + strand at 739.041 kb on + strand at 739.041 kb on + strand at 739.041 kb on + strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.042 kb on - strand at 739.058 kb on + strand at 739.058 kb on + strand at 739.058 kb on + strand at 739.102 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.112 kb on + strand at 739.113 kb on - strand at 739.113 kb on - strand at 739.113 kb on - strand at 739.113 kb on - strand at 739.113 kb on - strand at 739.113 kb on - strand at 739.113 kb on - strand at 739.113 kb on - strand at 739.113 kb on - strand at 739.113 kb on - strand at 739.113 kb on - strand at 739.113 kb on - strand at 739.163 kb on + strand at 739.163 kb on + strand at 739.163 kb on + strand at 739.163 kb on + strand at 739.163 kb on + strand at 739.163 kb on + strand at 739.163 kb on + strand at 739.163 kb on + strand at 739.163 kb on + strand at 739.163 kb on + strand at 739.164 kb on - strand at 739.164 kb on - strand at 739.164 kb on - strand at 739.164 kb on - strand at 739.164 kb on - strand at 739.164 kb on - strand at 739.164 kb on - strand at 739.164 kb on - strand at 739.244 kb on + strand at 739.244 kb on + strand at 739.244 kb on + strand at 739.244 kb on + strand at 739.244 kb on + strand at 739.244 kb on + strand at 739.244 kb on + strand at 739.244 kb on + strand at 739.244 kb on + strand at 739.244 kb on + strand at 739.244 kb on + strand at 739.245 kb on - strand at 739.245 kb on - strand at 739.245 kb on - strand at 739.245 kb on - strand at 739.245 kb on - strand at 739.245 kb on - strand at 739.245 kb on - strand at 739.245 kb on - strand at 739.245 kb on - strand at 739.245 kb on - strand at 739.245 kb on - strand at 739.245 kb on - strand at 739.293 kb on - strand, within MPMX19_00716 at 739.293 kb on - strand, within MPMX19_00716 at 739.293 kb on - strand, within MPMX19_00716 at 739.427 kb on + strand, within MPMX19_00716 at 739.427 kb on + strand, within MPMX19_00716 at 739.427 kb on + strand, within MPMX19_00716 at 739.427 kb on + strand, within MPMX19_00716 at 739.427 kb on + strand, within MPMX19_00716 at 739.427 kb on + strand, within MPMX19_00716 at 739.427 kb on + strand, within MPMX19_00716 at 739.427 kb on + strand, within MPMX19_00716 at 739.427 kb on + strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.428 kb on - strand, within MPMX19_00716 at 739.781 kb on + strand, within MPMX19_00716 at 739.781 kb on + strand, within MPMX19_00716 at 739.781 kb on + strand, within MPMX19_00716 at 739.781 kb on + strand, within MPMX19_00716 at 739.782 kb on - strand, within MPMX19_00716 at 739.782 kb on - strand, within MPMX19_00716 at 739.782 kb on - strand, within MPMX19_00716 at 740.045 kb on + strand, within MPMX19_00716 at 740.045 kb on + strand, within MPMX19_00716 at 740.045 kb on + strand, within MPMX19_00716 at 740.045 kb on + strand, within MPMX19_00716 at 740.045 kb on + strand, within MPMX19_00716 at 740.045 kb on + strand, within MPMX19_00716 at 740.045 kb on + strand, within MPMX19_00716 at 740.046 kb on - strand, within MPMX19_00716 at 740.046 kb on - strand, within MPMX19_00716 at 740.046 kb on - strand, within MPMX19_00716 at 740.046 kb on - strand, within MPMX19_00716 at 740.046 kb on - strand, within MPMX19_00716
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 736,548 + +0.7 736,548 + -0.5 736,548 + -0.8 736,548 + -0.0 736,548 + +1.4 736,548 + -0.0 736,548 + -1.3 736,548 + -0.6 736,548 + -0.8 736,548 + +1.7 736,548 + -0.6 736,548 + +0.7 736,548 + -1.2 736,548 + +1.0 736,548 + -0.4 736,548 + +1.7 736,548 + -2.2 736,548 + -0.4 736,548 + -0.2 736,548 + -0.7 736,548 + -0.4 736,548 + -1.7 736,548 + -0.3 736,548 + -1.1 736,548 + -1.3 736,549 - -1.0 736,549 - -0.2 736,549 - -1.3 736,549 - -1.2 736,549 - +2.0 736,549 - -0.3 736,549 - +0.7 736,549 - -0.6 736,549 - +0.2 736,549 - -1.1 736,549 - -1.6 736,549 - -0.8 736,549 - -0.9 736,549 - -0.3 736,549 - -0.0 736,549 - +0.2 736,549 - +0.4 736,549 - -0.2 736,549 - +0.4 736,549 - -0.8 736,549 - +0.1 736,549 - +1.8 736,549 - -1.2 736,549 - +1.8 736,549 - -1.0 736,549 - +0.1 736,599 + MPMX19_00714 0.13 -0.0 736,599 + MPMX19_00714 0.13 -0.8 736,599 + MPMX19_00714 0.13 -0.0 736,599 + MPMX19_00714 0.13 +0.1 736,599 + MPMX19_00714 0.13 -0.3 736,600 - MPMX19_00714 0.13 -1.0 736,600 - MPMX19_00714 0.13 +0.2 736,600 - MPMX19_00714 0.13 -0.8 736,600 - MPMX19_00714 0.13 -1.8 736,600 - MPMX19_00714 0.13 -0.0 736,600 - MPMX19_00714 0.13 +1.7 736,600 - MPMX19_00714 0.13 +0.7 736,600 - MPMX19_00714 0.13 +1.0 736,968 + MPMX19_00714 0.52 +1.4 736,968 + MPMX19_00714 0.52 -1.0 736,968 + MPMX19_00714 0.52 -0.3 736,968 + MPMX19_00714 0.52 -0.6 736,968 + MPMX19_00714 0.52 -0.4 736,968 + MPMX19_00714 0.52 -0.2 736,968 + MPMX19_00714 0.52 +0.8 736,968 + MPMX19_00714 0.52 +1.0 736,968 + MPMX19_00714 0.52 -0.0 736,968 + MPMX19_00714 0.52 -0.6 736,969 - MPMX19_00714 0.52 +2.0 736,969 - MPMX19_00714 0.52 -0.9 736,969 - MPMX19_00714 0.52 -0.8 736,969 - MPMX19_00714 0.52 -0.0 736,969 - MPMX19_00714 0.52 +0.6 736,969 - MPMX19_00714 0.52 -1.0 736,969 - MPMX19_00714 0.52 -0.2 736,969 - MPMX19_00714 0.52 -1.2 736,969 - MPMX19_00714 0.52 -0.1 736,969 - MPMX19_00714 0.52 +0.1 736,969 - MPMX19_00714 0.52 -0.0 737,457 + -0.6 737,458 - -1.3 737,467 + -1.5 737,526 + -0.8 737,531 + -0.0 737,531 + -0.8 737,532 - -0.6 737,532 - -0.4 737,532 - +0.2 737,536 + -1.2 737,592 + +0.3 737,606 + +0.8 737,606 + -2.0 737,607 - +0.2 737,607 - -1.3 737,609 + -0.6 737,609 + -0.3 737,609 + +0.3 737,609 + -0.8 737,609 + -0.3 737,609 + +1.0 737,609 + -0.2 737,609 + -0.2 737,610 - -1.2 737,610 - -1.0 737,610 - +0.4 737,610 - -0.6 737,610 - -0.6 737,610 - +1.5 738,651 + MPMX19_00715 0.73 -0.0 738,651 + MPMX19_00715 0.73 -0.3 738,651 + MPMX19_00715 0.73 +1.4 738,652 - MPMX19_00715 0.73 -0.6 738,652 - MPMX19_00715 0.73 -1.8 738,652 - MPMX19_00715 0.73 -0.2 738,652 - MPMX19_00715 0.73 -1.0 738,652 - MPMX19_00715 0.73 -0.3 738,652 - MPMX19_00715 0.73 +0.7 738,696 + MPMX19_00715 0.76 -1.6 738,696 + MPMX19_00715 0.76 -0.0 738,696 + MPMX19_00715 0.76 -0.5 738,696 + MPMX19_00715 0.76 -0.8 738,697 - MPMX19_00715 0.76 -0.6 738,795 + MPMX19_00715 0.83 -1.3 738,795 + MPMX19_00715 0.83 -1.1 738,795 + MPMX19_00715 0.83 -0.0 738,795 + MPMX19_00715 0.83 -0.6 738,795 + MPMX19_00715 0.83 -1.4 738,795 + MPMX19_00715 0.83 -0.8 738,796 - MPMX19_00715 0.83 +0.6 738,796 - MPMX19_00715 0.83 -1.8 738,796 - MPMX19_00715 0.83 -1.0 738,796 - MPMX19_00715 0.83 -0.3 738,942 + -0.0 738,942 + -1.5 738,942 + +0.5 738,943 - -0.9 739,041 + -0.4 739,041 + -0.6 739,041 + -0.0 739,041 + -1.5 739,041 + -1.4 739,041 + -1.0 739,041 + -0.0 739,041 + +0.4 739,041 + +0.4 739,041 + -0.0 739,041 + -0.8 739,042 - +0.4 739,042 - -0.2 739,042 - -1.0 739,042 - +1.5 739,042 - +0.3 739,042 - -1.3 739,042 - -0.2 739,042 - -0.1 739,042 - +0.1 739,042 - +0.1 739,042 - -0.6 739,042 - -1.3 739,042 - -0.0 739,042 - -1.0 739,042 - +0.7 739,042 - +0.3 739,042 - -0.9 739,058 + -1.0 739,058 + -1.0 739,058 + -2.3 739,102 + -1.3 739,112 + +1.0 739,112 + -0.5 739,112 + +1.0 739,112 + -1.0 739,112 + -0.0 739,112 + -1.5 739,112 + -0.3 739,112 + +1.4 739,112 + +0.1 739,112 + -1.0 739,112 + -0.0 739,112 + -1.8 739,112 + -1.0 739,112 + +0.6 739,112 + -0.3 739,113 - -0.2 739,113 - +0.2 739,113 - -3.3 739,113 - -0.6 739,113 - -1.3 739,113 - -0.7 739,113 - -0.4 739,113 - -1.6 739,113 - -1.2 739,113 - -0.6 739,113 - -1.3 739,113 - -0.0 739,163 + +0.7 739,163 + +1.2 739,163 + +0.3 739,163 + -1.6 739,163 + -0.6 739,163 + -1.6 739,163 + -0.7 739,163 + -0.5 739,163 + -0.5 739,163 + -0.8 739,164 - -1.3 739,164 - -1.3 739,164 - -2.3 739,164 - -0.2 739,164 - -2.0 739,164 - -1.2 739,164 - +0.5 739,164 - +0.1 739,244 + +0.4 739,244 + +0.3 739,244 + +1.0 739,244 + -0.2 739,244 + +0.5 739,244 + -0.9 739,244 + -0.8 739,244 + -1.3 739,244 + -1.5 739,244 + -0.3 739,244 + +1.0 739,245 - -0.5 739,245 - -1.0 739,245 - -0.8 739,245 - +1.6 739,245 - +0.3 739,245 - +0.2 739,245 - +0.2 739,245 - +0.6 739,245 - -1.3 739,245 - -0.3 739,245 - -1.0 739,245 - +0.2 739,293 - MPMX19_00716 0.12 +1.0 739,293 - MPMX19_00716 0.12 -0.3 739,293 - MPMX19_00716 0.12 -0.8 739,427 + MPMX19_00716 0.24 +0.2 739,427 + MPMX19_00716 0.24 -1.2 739,427 + MPMX19_00716 0.24 -0.8 739,427 + MPMX19_00716 0.24 +1.0 739,427 + MPMX19_00716 0.24 +1.0 739,427 + MPMX19_00716 0.24 -1.6 739,427 + MPMX19_00716 0.24 -0.8 739,427 + MPMX19_00716 0.24 +0.4 739,427 + MPMX19_00716 0.24 +1.0 739,428 - MPMX19_00716 0.24 -0.0 739,428 - MPMX19_00716 0.24 -0.6 739,428 - MPMX19_00716 0.24 -0.2 739,428 - MPMX19_00716 0.24 +1.0 739,428 - MPMX19_00716 0.24 -0.9 739,428 - MPMX19_00716 0.24 +0.4 739,428 - MPMX19_00716 0.24 -0.6 739,428 - MPMX19_00716 0.24 -1.6 739,428 - MPMX19_00716 0.24 -0.2 739,428 - MPMX19_00716 0.24 +0.8 739,428 - MPMX19_00716 0.24 -1.2 739,428 - MPMX19_00716 0.24 -0.0 739,428 - MPMX19_00716 0.24 -0.6 739,781 + MPMX19_00716 0.56 -0.0 739,781 + MPMX19_00716 0.56 -1.0 739,781 + MPMX19_00716 0.56 +0.4 739,781 + MPMX19_00716 0.56 -0.6 739,782 - MPMX19_00716 0.56 -1.3 739,782 - MPMX19_00716 0.56 +0.6 739,782 - MPMX19_00716 0.56 -1.0 740,045 + MPMX19_00716 0.80 -1.0 740,045 + MPMX19_00716 0.80 -0.5 740,045 + MPMX19_00716 0.80 +0.5 740,045 + MPMX19_00716 0.80 +1.3 740,045 + MPMX19_00716 0.80 -0.2 740,045 + MPMX19_00716 0.80 -1.6 740,045 + MPMX19_00716 0.80 -0.3 740,046 - MPMX19_00716 0.80 -0.5 740,046 - MPMX19_00716 0.80 -0.0 740,046 - MPMX19_00716 0.80 -0.8 740,046 - MPMX19_00716 0.80 -0.6 740,046 - MPMX19_00716 0.80 +0.2
Or see this region's nucleotide sequence