Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00696 and MPMX19_00697 are separated by 3 nucleotides MPMX19_00697 and MPMX19_00698 overlap by 4 nucleotides
MPMX19_00696: MPMX19_00696 - Crossover junction endodeoxyribonuclease RuvC, at 717,852 to 718,940
_00696
MPMX19_00697: MPMX19_00697 - Holliday junction ATP-dependent DNA helicase RuvA, at 718,944 to 719,570
_00697
MPMX19_00698: MPMX19_00698 - Holliday junction ATP-dependent DNA helicase RuvB, at 719,567 to 720,640
_00698
Position (kb) 718
719
720 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.389 kb on - strand, within MPMX19_00696 at 718.389 kb on - strand, within MPMX19_00696 at 718.389 kb on - strand, within MPMX19_00696 at 718.389 kb on - strand, within MPMX19_00696 at 718.389 kb on - strand, within MPMX19_00696 at 718.389 kb on - strand, within MPMX19_00696 at 718.389 kb on - strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.633 kb on + strand, within MPMX19_00696 at 718.633 kb on + strand, within MPMX19_00696 at 718.633 kb on + strand, within MPMX19_00696 at 719.019 kb on + strand, within MPMX19_00697 at 719.460 kb on + strand, within MPMX19_00697 at 719.923 kb on + strand, within MPMX19_00698 at 720.119 kb on + strand, within MPMX19_00698 at 720.396 kb on - strand, within MPMX19_00698 at 720.479 kb on + strand, within MPMX19_00698
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 718,388 + MPMX19_00696 0.49 -1.0 718,388 + MPMX19_00696 0.49 -0.9 718,388 + MPMX19_00696 0.49 +0.4 718,388 + MPMX19_00696 0.49 -0.0 718,388 + MPMX19_00696 0.49 -0.4 718,388 + MPMX19_00696 0.49 +1.7 718,388 + MPMX19_00696 0.49 -3.3 718,388 + MPMX19_00696 0.49 +1.4 718,388 + MPMX19_00696 0.49 -1.3 718,388 + MPMX19_00696 0.49 -0.9 718,388 + MPMX19_00696 0.49 -0.6 718,389 - MPMX19_00696 0.49 -2.2 718,389 - MPMX19_00696 0.49 -1.3 718,389 - MPMX19_00696 0.49 +0.4 718,389 - MPMX19_00696 0.49 -1.6 718,389 - MPMX19_00696 0.49 +0.7 718,389 - MPMX19_00696 0.49 -1.0 718,389 - MPMX19_00696 0.49 +1.0 718,631 + MPMX19_00696 0.72 -1.8 718,631 + MPMX19_00696 0.72 +0.4 718,631 + MPMX19_00696 0.72 +0.4 718,631 + MPMX19_00696 0.72 -0.3 718,631 + MPMX19_00696 0.72 -0.2 718,631 + MPMX19_00696 0.72 -1.8 718,631 + MPMX19_00696 0.72 +1.0 718,631 + MPMX19_00696 0.72 -2.0 718,631 + MPMX19_00696 0.72 -0.8 718,633 + MPMX19_00696 0.72 -1.3 718,633 + MPMX19_00696 0.72 -1.3 718,633 + MPMX19_00696 0.72 -0.2 719,019 + MPMX19_00697 0.12 -1.0 719,460 + MPMX19_00697 0.82 -1.3 719,923 + MPMX19_00698 0.33 -1.3 720,119 + MPMX19_00698 0.51 -0.3 720,396 - MPMX19_00698 0.77 -0.3 720,479 + MPMX19_00698 0.85 -1.0
Or see this region's nucleotide sequence