Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00600

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00599 and MPMX19_00600 overlap by 11 nucleotidesMPMX19_00600 and MPMX19_00601 are separated by 4 nucleotidesMPMX19_00601 and MPMX19_00602 overlap by 8 nucleotides MPMX19_00599: MPMX19_00599 - Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB, at 613,993 to 615,261 _00599 MPMX19_00600: MPMX19_00600 - hypothetical protein, at 615,251 to 615,532 _00600 MPMX19_00601: MPMX19_00601 - hypothetical protein, at 615,537 to 615,797 _00601 MPMX19_00602: MPMX19_00602 - Diaminopimelate epimerase, at 615,790 to 616,641 _00602 Position (kb) 615 616Strain fitness (log2 ratio) -2 -1 0 1 2at 615.276 kb on - strandat 615.276 kb on - strandat 615.276 kb on - strandat 615.276 kb on - strandat 615.276 kb on - strandat 615.276 kb on - strandat 615.276 kb on - strandat 615.276 kb on - strandat 615.276 kb on - strandat 615.312 kb on - strand, within MPMX19_00600at 615.312 kb on - strand, within MPMX19_00600at 615.312 kb on - strand, within MPMX19_00600at 615.312 kb on - strand, within MPMX19_00600at 615.312 kb on - strand, within MPMX19_00600at 615.312 kb on - strand, within MPMX19_00600at 615.312 kb on - strand, within MPMX19_00600at 615.312 kb on - strand, within MPMX19_00600at 615.312 kb on - strand, within MPMX19_00600at 615.312 kb on - strand, within MPMX19_00600at 615.312 kb on - strand, within MPMX19_00600at 615.312 kb on - strand, within MPMX19_00600at 615.312 kb on - strand, within MPMX19_00600at 615.312 kb on - strand, within MPMX19_00600at 615.312 kb on - strand, within MPMX19_00600at 615.312 kb on - strand, within MPMX19_00600at 615.312 kb on - strand, within MPMX19_00600at 615.312 kb on - strand, within MPMX19_00600at 615.312 kb on - strand, within MPMX19_00600at 615.312 kb on - strand, within MPMX19_00600at 615.612 kb on - strand, within MPMX19_00601at 615.612 kb on - strand, within MPMX19_00601at 615.612 kb on - strand, within MPMX19_00601at 615.612 kb on - strand, within MPMX19_00601at 615.612 kb on - strand, within MPMX19_00601at 615.612 kb on - strand, within MPMX19_00601at 615.612 kb on - strand, within MPMX19_00601at 615.612 kb on - strand, within MPMX19_00601at 615.612 kb on - strand, within MPMX19_00601at 615.612 kb on - strand, within MPMX19_00601at 615.612 kb on - strand, within MPMX19_00601at 615.612 kb on - strand, within MPMX19_00601at 615.612 kb on - strand, within MPMX19_00601at 615.616 kb on - strand, within MPMX19_00601at 615.616 kb on - strand, within MPMX19_00601at 615.616 kb on - strand, within MPMX19_00601at 615.616 kb on - strand, within MPMX19_00601at 615.616 kb on - strand, within MPMX19_00601at 615.616 kb on - strand, within MPMX19_00601at 615.616 kb on - strand, within MPMX19_00601at 615.616 kb on - strand, within MPMX19_00601at 615.616 kb on - strand, within MPMX19_00601at 615.616 kb on - strand, within MPMX19_00601at 615.616 kb on - strand, within MPMX19_00601at 615.616 kb on - strand, within MPMX19_00601at 615.616 kb on - strand, within MPMX19_00601at 615.616 kb on - strand, within MPMX19_00601at 615.752 kb on - strand, within MPMX19_00601at 615.752 kb on - strand, within MPMX19_00601at 615.752 kb on - strand, within MPMX19_00601at 615.752 kb on - strand, within MPMX19_00601at 615.752 kb on - strand, within MPMX19_00601at 615.752 kb on - strand, within MPMX19_00601at 615.752 kb on - strand, within MPMX19_00601at 615.752 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.755 kb on - strand, within MPMX19_00601at 615.762 kb on + strand, within MPMX19_00601at 615.763 kb on - strand, within MPMX19_00601at 615.763 kb on - strand, within MPMX19_00601at 615.763 kb on - strand, within MPMX19_00601at 615.763 kb on - strand, within MPMX19_00601at 615.763 kb on - strand, within MPMX19_00601at 615.763 kb on - strand, within MPMX19_00601at 615.763 kb on - strand, within MPMX19_00601at 615.763 kb on - strand, within MPMX19_00601

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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615,276 - -1.6
615,276 - -0.9
615,276 - -0.2
615,276 - +1.0
615,276 - -0.1
615,276 - +0.0
615,276 - +0.2
615,276 - +0.6
615,276 - -0.8
615,312 - MPMX19_00600 0.22 -0.8
615,312 - MPMX19_00600 0.22 -1.8
615,312 - MPMX19_00600 0.22 -1.8
615,312 - MPMX19_00600 0.22 -1.3
615,312 - MPMX19_00600 0.22 +1.0
615,312 - MPMX19_00600 0.22 -0.2
615,312 - MPMX19_00600 0.22 -0.6
615,312 - MPMX19_00600 0.22 +2.3
615,312 - MPMX19_00600 0.22 +0.1
615,312 - MPMX19_00600 0.22 +0.3
615,312 - MPMX19_00600 0.22 +0.0
615,312 - MPMX19_00600 0.22 -0.6
615,312 - MPMX19_00600 0.22 +0.2
615,312 - MPMX19_00600 0.22 +1.0
615,312 - MPMX19_00600 0.22 +1.3
615,312 - MPMX19_00600 0.22 +0.3
615,312 - MPMX19_00600 0.22 -1.2
615,312 - MPMX19_00600 0.22 +0.0
615,312 - MPMX19_00600 0.22 +0.7
615,312 - MPMX19_00600 0.22 +0.8
615,612 - MPMX19_00601 0.29 -0.9
615,612 - MPMX19_00601 0.29 -0.1
615,612 - MPMX19_00601 0.29 +1.0
615,612 - MPMX19_00601 0.29 +1.3
615,612 - MPMX19_00601 0.29 -1.3
615,612 - MPMX19_00601 0.29 +0.2
615,612 - MPMX19_00601 0.29 -0.8
615,612 - MPMX19_00601 0.29 -0.2
615,612 - MPMX19_00601 0.29 +1.0
615,612 - MPMX19_00601 0.29 +0.0
615,612 - MPMX19_00601 0.29 -0.9
615,612 - MPMX19_00601 0.29 -0.3
615,612 - MPMX19_00601 0.29 +0.3
615,616 - MPMX19_00601 0.30 +1.3
615,616 - MPMX19_00601 0.30 -0.8
615,616 - MPMX19_00601 0.30 -1.1
615,616 - MPMX19_00601 0.30 -0.6
615,616 - MPMX19_00601 0.30 -0.3
615,616 - MPMX19_00601 0.30 -0.6
615,616 - MPMX19_00601 0.30 -1.1
615,616 - MPMX19_00601 0.30 -1.5
615,616 - MPMX19_00601 0.30 -1.0
615,616 - MPMX19_00601 0.30 -0.6
615,616 - MPMX19_00601 0.30 +0.4
615,616 - MPMX19_00601 0.30 -0.5
615,616 - MPMX19_00601 0.30 -1.6
615,616 - MPMX19_00601 0.30 -0.1
615,752 - MPMX19_00601 0.82 -0.2
615,752 - MPMX19_00601 0.82 -1.3
615,752 - MPMX19_00601 0.82 -0.4
615,752 - MPMX19_00601 0.82 -1.1
615,752 - MPMX19_00601 0.82 -0.9
615,752 - MPMX19_00601 0.82 +0.0
615,752 - MPMX19_00601 0.82 -2.5
615,752 - MPMX19_00601 0.82 +1.0
615,755 - MPMX19_00601 0.84 -0.4
615,755 - MPMX19_00601 0.84 -1.3
615,755 - MPMX19_00601 0.84 -1.1
615,755 - MPMX19_00601 0.84 -0.5
615,755 - MPMX19_00601 0.84 -2.5
615,755 - MPMX19_00601 0.84 +2.0
615,755 - MPMX19_00601 0.84 +0.7
615,755 - MPMX19_00601 0.84 +1.7
615,755 - MPMX19_00601 0.84 -2.6
615,755 - MPMX19_00601 0.84 +0.4
615,755 - MPMX19_00601 0.84 +0.7
615,755 - MPMX19_00601 0.84 -1.0
615,755 - MPMX19_00601 0.84 -1.0
615,755 - MPMX19_00601 0.84 -1.7
615,755 - MPMX19_00601 0.84 -1.2
615,755 - MPMX19_00601 0.84 -0.9
615,755 - MPMX19_00601 0.84 +0.6
615,755 - MPMX19_00601 0.84 -0.2
615,755 - MPMX19_00601 0.84 -0.2
615,755 - MPMX19_00601 0.84 -1.3
615,755 - MPMX19_00601 0.84 +0.0
615,755 - MPMX19_00601 0.84 +0.4
615,755 - MPMX19_00601 0.84 -1.4
615,755 - MPMX19_00601 0.84 -0.9
615,755 - MPMX19_00601 0.84 +0.8
615,755 - MPMX19_00601 0.84 +0.6
615,762 + MPMX19_00601 0.86 +1.0
615,763 - MPMX19_00601 0.87 +0.0
615,763 - MPMX19_00601 0.87 +0.4
615,763 - MPMX19_00601 0.87 +0.0
615,763 - MPMX19_00601 0.87 +0.2
615,763 - MPMX19_00601 0.87 -1.0
615,763 - MPMX19_00601 0.87 -0.8
615,763 - MPMX19_00601 0.87 +1.3
615,763 - MPMX19_00601 0.87 +0.5

Or see this region's nucleotide sequence