Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00544 and MPMX19_00545 overlap by 4 nucleotides MPMX19_00545 and MPMX19_00546 are separated by 452 nucleotides MPMX19_00546 and MPMX19_00547 are separated by 16 nucleotides MPMX19_00547 and MPMX19_00548 are separated by 13 nucleotides
MPMX19_00544: MPMX19_00544 - hypothetical protein, at 559,394 to 559,903
_00544
MPMX19_00545: MPMX19_00545 - hypothetical protein, at 559,900 to 560,430
_00545
MPMX19_00546: MPMX19_00546 - Chaperone protein TorD, at 560,883 to 561,509
_00546
MPMX19_00547: MPMX19_00547 - hypothetical protein, at 561,526 to 561,777
_00547
MPMX19_00548: MPMX19_00548 - Periplasmic nitrate reductase, at 561,791 to 564,691
_00548
Position (kb) 560
561
562 Strain fitness (log2 ratio) -2
-1
0
1
2 at 560.215 kb on + strand, within MPMX19_00545 at 560.215 kb on + strand, within MPMX19_00545 at 560.215 kb on + strand, within MPMX19_00545 at 560.215 kb on + strand, within MPMX19_00545 at 560.215 kb on + strand, within MPMX19_00545 at 560.215 kb on + strand, within MPMX19_00545 at 560.216 kb on - strand, within MPMX19_00545 at 560.216 kb on - strand, within MPMX19_00545 at 560.216 kb on - strand, within MPMX19_00545 at 560.242 kb on + strand, within MPMX19_00545 at 560.242 kb on + strand, within MPMX19_00545 at 560.242 kb on + strand, within MPMX19_00545 at 560.242 kb on + strand, within MPMX19_00545 at 560.242 kb on + strand, within MPMX19_00545 at 560.242 kb on + strand, within MPMX19_00545 at 560.242 kb on + strand, within MPMX19_00545 at 560.243 kb on - strand, within MPMX19_00545 at 560.243 kb on - strand, within MPMX19_00545 at 560.243 kb on - strand, within MPMX19_00545 at 560.243 kb on - strand, within MPMX19_00545 at 560.243 kb on - strand, within MPMX19_00545 at 560.254 kb on + strand, within MPMX19_00545 at 560.254 kb on + strand, within MPMX19_00545 at 560.254 kb on + strand, within MPMX19_00545 at 560.254 kb on + strand, within MPMX19_00545 at 560.254 kb on + strand, within MPMX19_00545 at 560.255 kb on - strand, within MPMX19_00545 at 560.255 kb on - strand, within MPMX19_00545 at 560.255 kb on - strand, within MPMX19_00545 at 560.296 kb on + strand, within MPMX19_00545 at 560.297 kb on - strand, within MPMX19_00545 at 560.297 kb on - strand, within MPMX19_00545 at 560.428 kb on + strand at 560.429 kb on - strand at 560.429 kb on - strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.456 kb on - strand at 560.456 kb on - strand at 560.456 kb on - strand at 560.456 kb on - strand at 560.456 kb on - strand at 560.456 kb on - strand at 560.456 kb on - strand at 560.456 kb on - strand at 560.456 kb on - strand at 560.456 kb on - strand at 560.456 kb on - strand at 560.456 kb on - strand at 560.653 kb on + strand at 560.653 kb on + strand at 560.653 kb on + strand at 560.653 kb on + strand at 560.654 kb on - strand at 560.654 kb on - strand at 560.716 kb on - strand at 560.716 kb on - strand at 560.716 kb on - strand at 560.730 kb on + strand at 560.730 kb on + strand at 560.730 kb on + strand at 560.730 kb on + strand at 560.730 kb on + strand at 560.730 kb on + strand at 560.730 kb on + strand at 560.730 kb on + strand at 560.730 kb on + strand at 560.730 kb on + strand at 560.731 kb on - strand at 560.731 kb on - strand at 560.731 kb on - strand at 560.731 kb on - strand at 560.731 kb on - strand at 560.731 kb on - strand at 560.731 kb on - strand at 560.731 kb on - strand at 560.903 kb on + strand at 560.903 kb on + strand at 560.903 kb on + strand at 560.903 kb on + strand at 560.903 kb on + strand at 560.903 kb on + strand at 560.903 kb on + strand at 560.903 kb on + strand at 560.904 kb on - strand at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 561.041 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.439 kb on - strand, within MPMX19_00546 at 561.579 kb on + strand, within MPMX19_00547 at 561.580 kb on - strand, within MPMX19_00547 at 561.757 kb on + strand at 561.757 kb on + strand at 561.757 kb on + strand at 561.757 kb on + strand at 561.757 kb on + strand at 561.757 kb on + strand at 561.758 kb on - strand at 561.758 kb on - strand at 561.758 kb on - strand at 561.775 kb on + strand at 561.775 kb on + strand at 561.775 kb on + strand at 561.775 kb on + strand at 561.776 kb on - strand at 561.776 kb on - strand at 561.776 kb on - strand at 561.776 kb on - strand at 561.776 kb on - strand at 561.776 kb on - strand at 561.776 kb on - strand at 561.776 kb on - strand at 561.776 kb on - strand at 561.776 kb on - strand at 561.841 kb on + strand at 562.054 kb on + strand at 562.054 kb on + strand at 562.054 kb on + strand at 562.054 kb on + strand at 562.054 kb on + strand at 562.054 kb on + strand at 562.054 kb on + strand at 562.055 kb on - strand at 562.055 kb on - strand at 562.055 kb on - strand at 562.055 kb on - strand at 562.343 kb on + strand, within MPMX19_00548 at 562.343 kb on + strand, within MPMX19_00548 at 562.343 kb on + strand, within MPMX19_00548 at 562.343 kb on + strand, within MPMX19_00548 at 562.343 kb on + strand, within MPMX19_00548 at 562.343 kb on + strand, within MPMX19_00548 at 562.343 kb on + strand, within MPMX19_00548 at 562.343 kb on + strand, within MPMX19_00548 at 562.344 kb on - strand, within MPMX19_00548 at 562.344 kb on - strand, within MPMX19_00548 at 562.344 kb on - strand, within MPMX19_00548 at 562.344 kb on - strand, within MPMX19_00548 at 562.344 kb on - strand, within MPMX19_00548 at 562.344 kb on - strand, within MPMX19_00548 at 562.344 kb on - strand, within MPMX19_00548 at 562.344 kb on - strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.470 kb on - strand, within MPMX19_00548 at 562.470 kb on - strand, within MPMX19_00548 at 562.470 kb on - strand, within MPMX19_00548 at 562.470 kb on - strand, within MPMX19_00548 at 562.470 kb on - strand, within MPMX19_00548 at 562.470 kb on - strand, within MPMX19_00548 at 562.470 kb on - strand, within MPMX19_00548 at 562.470 kb on - strand, within MPMX19_00548 at 562.470 kb on - strand, within MPMX19_00548 at 562.470 kb on - strand, within MPMX19_00548
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 560,215 + MPMX19_00545 0.59 +2.3 560,215 + MPMX19_00545 0.59 -1.3 560,215 + MPMX19_00545 0.59 -0.0 560,215 + MPMX19_00545 0.59 -0.9 560,215 + MPMX19_00545 0.59 +1.4 560,215 + MPMX19_00545 0.59 -1.7 560,216 - MPMX19_00545 0.60 -0.7 560,216 - MPMX19_00545 0.60 -0.1 560,216 - MPMX19_00545 0.60 -0.0 560,242 + MPMX19_00545 0.64 -0.2 560,242 + MPMX19_00545 0.64 -0.2 560,242 + MPMX19_00545 0.64 -0.2 560,242 + MPMX19_00545 0.64 -1.5 560,242 + MPMX19_00545 0.64 -0.4 560,242 + MPMX19_00545 0.64 +0.3 560,242 + MPMX19_00545 0.64 -0.8 560,243 - MPMX19_00545 0.65 -0.9 560,243 - MPMX19_00545 0.65 +1.0 560,243 - MPMX19_00545 0.65 -0.6 560,243 - MPMX19_00545 0.65 -2.2 560,243 - MPMX19_00545 0.65 -0.8 560,254 + MPMX19_00545 0.67 +0.1 560,254 + MPMX19_00545 0.67 -1.6 560,254 + MPMX19_00545 0.67 -0.2 560,254 + MPMX19_00545 0.67 +0.4 560,254 + MPMX19_00545 0.67 +1.6 560,255 - MPMX19_00545 0.67 +1.4 560,255 - MPMX19_00545 0.67 -1.3 560,255 - MPMX19_00545 0.67 -2.0 560,296 + MPMX19_00545 0.75 -0.6 560,297 - MPMX19_00545 0.75 -1.6 560,297 - MPMX19_00545 0.75 -0.6 560,428 + -0.0 560,429 - -0.3 560,429 - -1.0 560,455 + -1.0 560,455 + +0.4 560,455 + -1.5 560,455 + -1.5 560,455 + +2.0 560,455 + -0.5 560,455 + +0.2 560,455 + -0.2 560,455 + -0.7 560,455 + +2.0 560,455 + +0.8 560,455 + +0.2 560,455 + -1.0 560,455 + -0.5 560,455 + -1.0 560,455 + -0.0 560,456 - -1.3 560,456 - -1.0 560,456 - -0.1 560,456 - -1.7 560,456 - +0.4 560,456 - -0.2 560,456 - -1.8 560,456 - -0.8 560,456 - -1.0 560,456 - -0.1 560,456 - -1.9 560,456 - -1.6 560,653 + -0.1 560,653 + -1.2 560,653 + -1.0 560,653 + -0.0 560,654 - -0.3 560,654 - -0.8 560,716 - -0.6 560,716 - +1.0 560,716 - +0.4 560,730 + -1.0 560,730 + +1.6 560,730 + -0.0 560,730 + +0.2 560,730 + -0.0 560,730 + -1.3 560,730 + -0.0 560,730 + -1.0 560,730 + +0.6 560,730 + -0.6 560,731 - -0.4 560,731 - -0.0 560,731 - -0.7 560,731 - +0.4 560,731 - -0.3 560,731 - -2.3 560,731 - -0.2 560,731 - -1.5 560,903 + -1.0 560,903 + -0.0 560,903 + +1.2 560,903 + -0.4 560,903 + -0.7 560,903 + -0.6 560,903 + +0.5 560,903 + -0.6 560,904 - -0.9 560,952 + MPMX19_00546 0.11 +0.2 560,952 + MPMX19_00546 0.11 +0.7 560,952 + MPMX19_00546 0.11 -1.0 560,952 + MPMX19_00546 0.11 -0.6 560,952 + MPMX19_00546 0.11 -1.5 560,952 + MPMX19_00546 0.11 -0.5 560,952 + MPMX19_00546 0.11 -1.8 560,952 + MPMX19_00546 0.11 -1.2 560,952 + MPMX19_00546 0.11 -0.3 560,952 + MPMX19_00546 0.11 -1.1 560,952 + MPMX19_00546 0.11 -0.3 560,952 + MPMX19_00546 0.11 -0.6 560,952 + MPMX19_00546 0.11 -0.6 560,952 + MPMX19_00546 0.11 -0.2 560,952 + MPMX19_00546 0.11 -1.5 560,952 + MPMX19_00546 0.11 -1.0 560,952 + MPMX19_00546 0.11 -0.8 560,952 + MPMX19_00546 0.11 -1.0 560,952 + MPMX19_00546 0.11 -0.9 560,952 + MPMX19_00546 0.11 -1.6 560,953 - MPMX19_00546 0.11 +0.8 560,953 - MPMX19_00546 0.11 -1.2 560,953 - MPMX19_00546 0.11 +1.0 560,953 - MPMX19_00546 0.11 +0.3 560,953 - MPMX19_00546 0.11 -0.4 560,953 - MPMX19_00546 0.11 +0.4 560,953 - MPMX19_00546 0.11 -0.0 560,953 - MPMX19_00546 0.11 -0.8 560,953 - MPMX19_00546 0.11 +1.0 560,953 - MPMX19_00546 0.11 -1.0 560,953 - MPMX19_00546 0.11 -1.0 560,953 - MPMX19_00546 0.11 +1.0 560,953 - MPMX19_00546 0.11 -0.6 560,953 - MPMX19_00546 0.11 +0.4 560,953 - MPMX19_00546 0.11 -1.1 560,953 - MPMX19_00546 0.11 +1.2 560,953 - MPMX19_00546 0.11 -0.2 560,953 - MPMX19_00546 0.11 -1.0 561,041 + MPMX19_00546 0.25 -1.0 561,165 + MPMX19_00546 0.45 -0.6 561,165 + MPMX19_00546 0.45 +0.3 561,165 + MPMX19_00546 0.45 -0.2 561,165 + MPMX19_00546 0.45 +1.3 561,165 + MPMX19_00546 0.45 +0.7 561,165 + MPMX19_00546 0.45 -1.3 561,165 + MPMX19_00546 0.45 -1.5 561,165 + MPMX19_00546 0.45 -1.6 561,165 + MPMX19_00546 0.45 -2.6 561,165 + MPMX19_00546 0.45 -0.4 561,165 + MPMX19_00546 0.45 -1.6 561,165 + MPMX19_00546 0.45 -0.6 561,165 + MPMX19_00546 0.45 -0.0 561,165 + MPMX19_00546 0.45 +0.4 561,166 - MPMX19_00546 0.45 -0.0 561,166 - MPMX19_00546 0.45 -0.8 561,166 - MPMX19_00546 0.45 -2.0 561,166 - MPMX19_00546 0.45 +0.6 561,166 - MPMX19_00546 0.45 +0.4 561,166 - MPMX19_00546 0.45 -1.6 561,166 - MPMX19_00546 0.45 -0.7 561,166 - MPMX19_00546 0.45 +0.7 561,166 - MPMX19_00546 0.45 -0.0 561,166 - MPMX19_00546 0.45 +1.0 561,166 - MPMX19_00546 0.45 -0.6 561,166 - MPMX19_00546 0.45 +0.4 561,166 - MPMX19_00546 0.45 -0.6 561,166 - MPMX19_00546 0.45 +0.2 561,166 - MPMX19_00546 0.45 +1.2 561,439 - MPMX19_00546 0.89 -1.6 561,579 + MPMX19_00547 0.21 -0.6 561,580 - MPMX19_00547 0.21 +0.4 561,757 + -0.6 561,757 + -0.1 561,757 + -0.0 561,757 + -0.8 561,757 + -0.7 561,757 + +0.4 561,758 - -1.0 561,758 - +0.8 561,758 - -1.9 561,775 + -0.3 561,775 + -0.6 561,775 + -0.0 561,775 + -0.9 561,776 - -0.5 561,776 - -1.1 561,776 - -1.0 561,776 - -1.6 561,776 - -0.7 561,776 - -0.5 561,776 - -0.0 561,776 - -1.6 561,776 - -0.6 561,776 - -1.0 561,841 + +0.1 562,054 + -1.0 562,054 + +0.2 562,054 + -0.2 562,054 + -0.3 562,054 + -0.2 562,054 + -0.6 562,054 + -0.9 562,055 - +0.2 562,055 - +1.6 562,055 - -0.4 562,055 - -0.6 562,343 + MPMX19_00548 0.19 +1.0 562,343 + MPMX19_00548 0.19 +1.0 562,343 + MPMX19_00548 0.19 +1.0 562,343 + MPMX19_00548 0.19 -0.3 562,343 + MPMX19_00548 0.19 -1.2 562,343 + MPMX19_00548 0.19 -0.3 562,343 + MPMX19_00548 0.19 +1.0 562,343 + MPMX19_00548 0.19 -0.9 562,344 - MPMX19_00548 0.19 +0.1 562,344 - MPMX19_00548 0.19 +0.9 562,344 - MPMX19_00548 0.19 +0.8 562,344 - MPMX19_00548 0.19 +0.4 562,344 - MPMX19_00548 0.19 -1.6 562,344 - MPMX19_00548 0.19 -0.3 562,344 - MPMX19_00548 0.19 -0.2 562,344 - MPMX19_00548 0.19 -0.2 562,469 + MPMX19_00548 0.23 -0.0 562,469 + MPMX19_00548 0.23 +1.3 562,469 + MPMX19_00548 0.23 -1.1 562,469 + MPMX19_00548 0.23 -1.0 562,469 + MPMX19_00548 0.23 -1.8 562,469 + MPMX19_00548 0.23 -1.0 562,469 + MPMX19_00548 0.23 -0.9 562,469 + MPMX19_00548 0.23 -0.2 562,469 + MPMX19_00548 0.23 +0.3 562,469 + MPMX19_00548 0.23 +0.7 562,469 + MPMX19_00548 0.23 +0.3 562,469 + MPMX19_00548 0.23 -2.2 562,469 + MPMX19_00548 0.23 +0.4 562,469 + MPMX19_00548 0.23 -0.9 562,469 + MPMX19_00548 0.23 +0.3 562,469 + MPMX19_00548 0.23 -0.8 562,469 + MPMX19_00548 0.23 -0.8 562,469 + MPMX19_00548 0.23 -0.9 562,469 + MPMX19_00548 0.23 -0.9 562,470 - MPMX19_00548 0.23 -1.5 562,470 - MPMX19_00548 0.23 -1.3 562,470 - MPMX19_00548 0.23 -0.0 562,470 - MPMX19_00548 0.23 -0.3 562,470 - MPMX19_00548 0.23 -0.3 562,470 - MPMX19_00548 0.23 -1.2 562,470 - MPMX19_00548 0.23 -1.3 562,470 - MPMX19_00548 0.23 -0.1 562,470 - MPMX19_00548 0.23 -0.2 562,470 - MPMX19_00548 0.23 -0.6
Or see this region's nucleotide sequence