Strain Fitness in Escherichia coli ECRC101 around MCAODC_23235

Experiment: WM_Bas14

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_Bas14
1,380,799	+	ycdZ	MCAODC_23225	0.47	+0.1
1,380,800	-	ycdZ	MCAODC_23225	0.48	+0.1
1,380,800	-	ycdZ	MCAODC_23225	0.48	-0.3
1,380,800	-	ycdZ	MCAODC_23225	0.48	+0.6
1,380,839	-	ycdZ	MCAODC_23225	0.55	+0.3
1,380,843	-	ycdZ	MCAODC_23225	0.56	+0.4
1,380,843	-	ycdZ	MCAODC_23225	0.56	-0.2
1,380,843	-	ycdZ	MCAODC_23225	0.56	+0.8
1,380,869	+	ycdZ	MCAODC_23225	0.61	+0.2
1,380,870	-	ycdZ	MCAODC_23225	0.61	+0.3
1,381,035	+				-1.2
1,381,035	+				-0.4
1,381,036	-				-0.8
1,381,036	-				-1.2
1,381,056	-				-0.8
1,381,096	+				+0.8
1,381,111	+				-0.7
1,381,111	+				+0.1
1,381,125	-				+1.2
1,381,125	-				+0.0
1,381,146	+				+1.6
1,381,146	+				-0.4
1,381,387	+	ycdY	MCAODC_23230	0.44	+0.1
1,381,388	-	ycdY	MCAODC_23230	0.44	-0.2
1,381,463	-	ycdY	MCAODC_23230	0.57	+1.4
1,381,532	-	ycdY	MCAODC_23230	0.70	+0.5
1,381,532	-	ycdY	MCAODC_23230	0.70	+0.3
1,381,616	-	ycdY	MCAODC_23230	0.85	-1.9
1,381,616	-	ycdY	MCAODC_23230	0.85	-0.5
1,381,685	-				+1.0
1,381,701	-				-0.1
1,381,703	+				-2.4
1,381,703	+				+0.8
1,381,704	-				+0.2
1,381,706	-				+1.5
1,381,724	+				+0.5
1,381,725	-				+0.5
1,381,843	-	ycdX	MCAODC_23235	0.16	+0.8
1,381,870	-	ycdX	MCAODC_23235	0.20	+0.0
1,381,870	-	ycdX	MCAODC_23235	0.20	-0.9
1,381,962	+	ycdX	MCAODC_23235	0.32	+0.1
1,382,037	+	ycdX	MCAODC_23235	0.43	+1.4
1,382,038	-	ycdX	MCAODC_23235	0.43	+0.1
1,382,051	+	ycdX	MCAODC_23235	0.44	+0.9
1,382,075	-	ycdX	MCAODC_23235	0.48	+0.9
1,382,077	+	ycdX	MCAODC_23235	0.48	-0.8
1,382,078	-	ycdX	MCAODC_23235	0.48	-0.6
1,382,078	-	ycdX	MCAODC_23235	0.48	-1.4
1,382,078	-	ycdX	MCAODC_23235	0.48	-0.1
1,382,078	-	ycdX	MCAODC_23235	0.48	+0.3
1,382,078	-	ycdX	MCAODC_23235	0.48	-0.7
1,382,078	-	ycdX	MCAODC_23235	0.48	+0.6
1,382,078	-	ycdX	MCAODC_23235	0.48	-0.8
1,382,079	+	ycdX	MCAODC_23235	0.48	-2.4
1,382,079	+	ycdX	MCAODC_23235	0.48	+1.0
1,382,080	-	ycdX	MCAODC_23235	0.48	+1.1
1,382,080	-	ycdX	MCAODC_23235	0.48	+0.8
1,382,122	-	ycdX	MCAODC_23235	0.54	-0.4
1,382,122	-	ycdX	MCAODC_23235	0.54	+0.0
1,382,233	-	ycdX	MCAODC_23235	0.69	-2.1
1,382,238	+	ycdX	MCAODC_23235	0.70	+0.3
1,382,238	+	ycdX	MCAODC_23235	0.70	+0.4
1,382,239	-	ycdX	MCAODC_23235	0.70	+2.1
1,382,290	-	ycdX	MCAODC_23235	0.77	+0.7
1,382,290	-	ycdX	MCAODC_23235	0.77	+0.6
1,382,350	-	ycdX	MCAODC_23235	0.85	+0.2
1,382,393	+				-0.2
1,382,409	+				+0.9
1,382,410	-				+0.8
1,382,410	-				+0.2
1,382,410	-				+0.0
1,382,411	+				+0.9
1,382,411	+				-0.8
1,382,411	+				-0.2
1,382,411	+				-0.4
1,382,412	-				+1.3
1,382,412	-				+1.5
1,382,412	-				-0.9
1,382,439	+				-1.6
1,382,439	+				-1.1
1,382,439	+				+0.0
1,382,456	+				-0.4
1,382,460	+				+0.8
1,382,460	+				+0.6
1,382,460	+				+0.4
1,382,460	+				-1.0
1,382,460	+				-0.9
1,382,461	-				-0.4
1,382,461	-				-0.3
1,382,461	-				+0.6
1,382,461	-				+0.0
1,382,461	-				+0.4
1,382,461	-				+0.9
1,382,474	-				+0.5
1,382,494	-				-2.0
1,382,513	+				-0.8
1,382,513	+				+1.1
1,382,514	-				+0.5
1,382,639	-	ghrA	MCAODC_23240	0.13	+0.5
1,382,793	-	ghrA	MCAODC_23240	0.30	+0.0
1,383,017	-	ghrA	MCAODC_23240	0.53	-1.4
1,383,043	-	ghrA	MCAODC_23240	0.56	+0.0
1,383,149	+	ghrA	MCAODC_23240	0.68	+0.8
1,383,150	-	ghrA	MCAODC_23240	0.68	+1.4
1,383,283	-	ghrA	MCAODC_23240	0.82	+0.2
1,383,325	+	ghrA	MCAODC_23240	0.86	-1.4
1,383,326	-	ghrA	MCAODC_23240	0.86	+0.6
1,383,387	+				-0.4
1,383,387	+				+0.3
1,383,388	-				+0.1
1,383,388	-				-1.8
1,383,438	-				-0.2