Strain Fitness in Escherichia coli ECRC101 around MCAODC_21740

Experiment: WM_Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnarX and narX overlap by 8 nucleotidesnarX and ychO are separated by 0 nucleotides MCAODC_21735: narX - nitrate/nitrite two-component system sensor histidine kinase NarX, at 1,132,890 to 1,134,686 narX MCAODC_21740: narX - nitrate/nitrite two-component system sensor histidine kinase NarX, at 1,134,679 to 1,135,329 narX MCAODC_21745: ychO - inverse autotransporter invasin YchO, at 1,135,330 to 1,136,760 ychO Position (kb) 1134 1135 1136Strain fitness (log2 ratio) -2 -1 0 1 2at 1133.701 kb on + strand, within narXat 1133.714 kb on - strand, within narXat 1133.732 kb on - strand, within narXat 1133.732 kb on - strand, within narXat 1133.754 kb on + strand, within narXat 1133.804 kb on + strand, within narXat 1133.903 kb on + strand, within narXat 1133.910 kb on + strand, within narXat 1134.136 kb on + strand, within narXat 1134.181 kb on + strand, within narXat 1134.303 kb on + strand, within narXat 1134.409 kb on + strand, within narXat 1134.409 kb on + strand, within narXat 1134.410 kb on - strand, within narXat 1134.413 kb on + strand, within narXat 1134.413 kb on + strand, within narXat 1134.550 kb on + strandat 1134.550 kb on + strandat 1134.551 kb on - strandat 1134.553 kb on + strandat 1134.674 kb on + strandat 1134.684 kb on + strandat 1134.851 kb on + strand, within narXat 1134.932 kb on + strand, within narXat 1135.064 kb on + strand, within narXat 1135.065 kb on - strand, within narXat 1135.238 kb on + strand, within narXat 1135.239 kb on - strand, within narXat 1135.239 kb on - strand, within narXat 1135.546 kb on + strand, within ychOat 1135.738 kb on + strand, within ychOat 1135.802 kb on + strand, within ychOat 1135.854 kb on + strand, within ychOat 1135.855 kb on - strand, within ychOat 1135.876 kb on + strand, within ychOat 1135.893 kb on - strand, within ychOat 1135.979 kb on - strand, within ychOat 1136.006 kb on + strand, within ychOat 1136.127 kb on - strand, within ychOat 1136.200 kb on - strand, within ychOat 1136.201 kb on + strand, within ychOat 1136.277 kb on + strand, within ychOat 1136.278 kb on - strand, within ychOat 1136.304 kb on - strand, within ychOat 1136.313 kb on + strand, within ychOat 1136.314 kb on - strand, within ychO

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas14
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1,133,701 + narX MCAODC_21735 0.45 +1.8
1,133,714 - narX MCAODC_21735 0.46 -0.1
1,133,732 - narX MCAODC_21735 0.47 -1.2
1,133,732 - narX MCAODC_21735 0.47 -0.1
1,133,754 + narX MCAODC_21735 0.48 +1.9
1,133,804 + narX MCAODC_21735 0.51 -0.5
1,133,903 + narX MCAODC_21735 0.56 -0.0
1,133,910 + narX MCAODC_21735 0.57 -0.1
1,134,136 + narX MCAODC_21735 0.69 -0.4
1,134,181 + narX MCAODC_21735 0.72 +1.0
1,134,303 + narX MCAODC_21735 0.79 +0.3
1,134,409 + narX MCAODC_21735 0.85 +1.1
1,134,409 + narX MCAODC_21735 0.85 -2.1
1,134,410 - narX MCAODC_21735 0.85 +0.0
1,134,413 + narX MCAODC_21735 0.85 +0.4
1,134,413 + narX MCAODC_21735 0.85 +0.5
1,134,550 + -0.1
1,134,550 + +1.8
1,134,551 - -0.8
1,134,553 + -1.1
1,134,674 + -0.6
1,134,684 + +1.1
1,134,851 + narX MCAODC_21740 0.26 -0.7
1,134,932 + narX MCAODC_21740 0.39 -1.0
1,135,064 + narX MCAODC_21740 0.59 +0.3
1,135,065 - narX MCAODC_21740 0.59 +0.2
1,135,238 + narX MCAODC_21740 0.86 +0.0
1,135,239 - narX MCAODC_21740 0.86 -0.8
1,135,239 - narX MCAODC_21740 0.86 +0.7
1,135,546 + ychO MCAODC_21745 0.15 -0.1
1,135,738 + ychO MCAODC_21745 0.29 +0.9
1,135,802 + ychO MCAODC_21745 0.33 -0.3
1,135,854 + ychO MCAODC_21745 0.37 +0.8
1,135,855 - ychO MCAODC_21745 0.37 +2.2
1,135,876 + ychO MCAODC_21745 0.38 -0.7
1,135,893 - ychO MCAODC_21745 0.39 +0.3
1,135,979 - ychO MCAODC_21745 0.45 -0.4
1,136,006 + ychO MCAODC_21745 0.47 +1.6
1,136,127 - ychO MCAODC_21745 0.56 -0.3
1,136,200 - ychO MCAODC_21745 0.61 -0.1
1,136,201 + ychO MCAODC_21745 0.61 +1.7
1,136,277 + ychO MCAODC_21745 0.66 -0.7
1,136,278 - ychO MCAODC_21745 0.66 -1.5
1,136,304 - ychO MCAODC_21745 0.68 +0.1
1,136,313 + ychO MCAODC_21745 0.69 -1.1
1,136,314 - ychO MCAODC_21745 0.69 +0.8

Or see this region's nucleotide sequence