Experiment: WM_Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pphC and terY are separated by 77 nucleotides terY and ibsA are separated by 220 nucleotides ibsA and MCAODC_20725 are separated by 271 nucleotides MCAODC_20725 and MCAODC_20735 are separated by 271 nucleotides MCAODC_20735 and mdtA are separated by 279 nucleotides
MCAODC_20700: pphC - Serine/threonine-protein phosphatase 3, at 954,706 to 955,386
pphC
MCAODC_20705: terY - Uncharacterized protein YegL, at 955,464 to 956,123
terY
MCAODC_20715: ibsA - Small toxic protein IbsA, at 956,344 to 956,403
ibsA
MCAODC_20725: MCAODC_20725 - Type I toxin-antitoxin system Ibs family toxin, at 956,675 to 956,731
_20725
MCAODC_20735: MCAODC_20735 - Type I toxin-antitoxin system Ibs family toxin, at 957,003 to 957,059
_20735
MCAODC_20740: mdtA - multidrug efflux RND transporter subunit MdtA, at 957,339 to 958,586
mdtA
Position (kb) 956
957 Strain fitness (log2 ratio) -2
-1
0
1
2 at 955.408 kb on + strand at 955.408 kb on + strand at 955.409 kb on - strand at 955.409 kb on - strand at 955.409 kb on - strand at 955.449 kb on - strand at 955.576 kb on - strand, within terY at 955.625 kb on + strand, within terY at 955.671 kb on - strand, within terY at 955.671 kb on - strand, within terY at 955.760 kb on - strand, within terY at 955.763 kb on - strand, within terY at 955.770 kb on - strand, within terY at 955.932 kb on - strand, within terY at 955.932 kb on - strand, within terY at 955.989 kb on - strand, within terY at 956.138 kb on + strand at 956.164 kb on + strand at 956.185 kb on - strand at 956.240 kb on - strand at 956.277 kb on + strand at 956.278 kb on - strand at 956.345 kb on + strand at 956.345 kb on + strand at 956.345 kb on + strand at 956.346 kb on - strand at 956.349 kb on - strand at 956.349 kb on - strand at 956.361 kb on + strand, within ibsA at 956.362 kb on - strand, within ibsA at 956.369 kb on - strand, within ibsA at 956.374 kb on + strand, within ibsA at 956.374 kb on + strand, within ibsA at 956.383 kb on + strand, within ibsA at 956.384 kb on - strand, within ibsA at 956.404 kb on - strand at 956.567 kb on - strand at 956.670 kb on + strand at 956.679 kb on + strand at 956.693 kb on + strand, within MCAODC_20725 at 956.693 kb on + strand, within MCAODC_20725 at 956.693 kb on + strand, within MCAODC_20725 at 956.694 kb on - strand, within MCAODC_20725 at 956.699 kb on + strand, within MCAODC_20725 at 956.748 kb on - strand at 956.748 kb on - strand at 956.998 kb on + strand at 956.998 kb on + strand at 957.004 kb on + strand at 957.004 kb on + strand at 957.004 kb on + strand at 957.007 kb on + strand at 957.007 kb on + strand at 957.017 kb on - strand, within MCAODC_20735 at 957.020 kb on + strand, within MCAODC_20735 at 957.048 kb on + strand, within MCAODC_20735 at 957.049 kb on - strand, within MCAODC_20735 at 957.071 kb on + strand at 957.075 kb on + strand at 957.135 kb on + strand at 957.178 kb on + strand at 957.258 kb on - strand at 957.291 kb on - strand at 957.291 kb on - strand at 957.295 kb on + strand at 957.295 kb on + strand at 957.296 kb on - strand at 957.299 kb on - strand at 957.299 kb on - strand at 957.353 kb on + strand at 957.354 kb on - strand at 957.354 kb on - strand at 957.354 kb on - strand at 957.382 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas14 remove 955,408 + -0.1 955,408 + +1.7 955,409 - +0.3 955,409 - -0.9 955,409 - +0.3 955,449 - +0.2 955,576 - terY MCAODC_20705 0.17 +1.5 955,625 + terY MCAODC_20705 0.24 +0.1 955,671 - terY MCAODC_20705 0.31 -0.9 955,671 - terY MCAODC_20705 0.31 +1.7 955,760 - terY MCAODC_20705 0.45 +0.7 955,763 - terY MCAODC_20705 0.45 -1.9 955,770 - terY MCAODC_20705 0.46 +0.5 955,932 - terY MCAODC_20705 0.71 -0.4 955,932 - terY MCAODC_20705 0.71 -0.5 955,989 - terY MCAODC_20705 0.80 +0.5 956,138 + -1.7 956,164 + -0.5 956,185 - +0.1 956,240 - -0.4 956,277 + -0.9 956,278 - +0.2 956,345 + -1.1 956,345 + -0.6 956,345 + +0.4 956,346 - +1.4 956,349 - +0.5 956,349 - +0.0 956,361 + ibsA MCAODC_20715 0.28 -0.5 956,362 - ibsA MCAODC_20715 0.30 +2.7 956,369 - ibsA MCAODC_20715 0.42 +0.4 956,374 + ibsA MCAODC_20715 0.50 -0.1 956,374 + ibsA MCAODC_20715 0.50 -1.4 956,383 + ibsA MCAODC_20715 0.65 -2.0 956,384 - ibsA MCAODC_20715 0.67 +0.2 956,404 - -0.6 956,567 - -0.3 956,670 + -0.2 956,679 + +0.2 956,693 + MCAODC_20725 0.32 +0.2 956,693 + MCAODC_20725 0.32 -1.7 956,693 + MCAODC_20725 0.32 +1.7 956,694 - MCAODC_20725 0.33 -0.1 956,699 + MCAODC_20725 0.42 -1.5 956,748 - -0.5 956,748 - -0.4 956,998 + -0.2 956,998 + -0.9 957,004 + -0.9 957,004 + -0.0 957,004 + +0.3 957,007 + -0.4 957,007 + -0.0 957,017 - MCAODC_20735 0.25 +0.1 957,020 + MCAODC_20735 0.30 -0.3 957,048 + MCAODC_20735 0.79 -0.3 957,049 - MCAODC_20735 0.81 +1.1 957,071 + +0.2 957,075 + -0.9 957,135 + -0.2 957,178 + -0.1 957,258 - +0.0 957,291 - -0.4 957,291 - +1.2 957,295 + -0.9 957,295 + +0.1 957,296 - +0.7 957,299 - +0.1 957,299 - +0.4 957,353 + -0.1 957,354 - -0.5 957,354 - +0.4 957,354 - +0.7 957,382 + +0.2
Or see this region's nucleotide sequence