Strain Fitness in Escherichia coli ECRC101 around MCAODC_16970

Experiment: WM_Bas14

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMCAODC_16960 and lomR are separated by 64 nucleotideslomR and MCAODC_16970 are separated by 67 nucleotidesMCAODC_16970 and MCAODC_16975 overlap by 4 nucleotides MCAODC_16960: MCAODC_16960 - Tail fiber protein, at 298,676 to 299,989 _16960 MCAODC_16965: lomR - Ail/Lom family protein, at 300,054 to 300,653 lomR MCAODC_16970: MCAODC_16970 - Phage-related protein, tail protein J, at 300,721 to 303,231 _16970 MCAODC_16975: MCAODC_16975 - host specificity protein J, at 303,228 to 304,796 _16975 Position (kb) 300 301 302 303 304Strain fitness (log2 ratio) -1 0 1at 301.308 kb on + strand, within MCAODC_16970at 301.436 kb on - strand, within MCAODC_16970at 301.436 kb on - strand, within MCAODC_16970at 301.493 kb on + strand, within MCAODC_16970at 301.493 kb on + strand, within MCAODC_16970at 301.494 kb on - strand, within MCAODC_16970at 301.494 kb on - strand, within MCAODC_16970at 301.494 kb on - strand, within MCAODC_16970at 301.533 kb on - strand, within MCAODC_16970

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas14
remove
301,308 + MCAODC_16970 0.23 +0.1
301,436 - MCAODC_16970 0.28 +0.9
301,436 - MCAODC_16970 0.28 +0.9
301,493 + MCAODC_16970 0.31 +0.8
301,493 + MCAODC_16970 0.31 -1.6
301,494 - MCAODC_16970 0.31 +0.1
301,494 - MCAODC_16970 0.31 -0.4
301,494 - MCAODC_16970 0.31 -0.6
301,533 - MCAODC_16970 0.32 +1.6

Or see this region's nucleotide sequence