Experiment: WM_Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uspE and fnr are separated by 151 nucleotides fnr and ogt are separated by 194 nucleotides ogt and abgT are separated by 10 nucleotides
MCAODC_16025: uspE - universal stress protein UspE, at 95,819 to 96,769
uspE
MCAODC_16030: fnr - fumarate/nitrate reduction transcriptional regulator Fnr, at 96,921 to 97,673
fnr
MCAODC_16035: ogt - methylated-DNA--[protein]-cysteine S-methyltransferase, at 97,868 to 98,383
ogt
MCAODC_16040: abgT - p-aminobenzoyl-glutamate transporter, at 98,394 to 99,920
abgT
Position (kb) 96
97
98 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 95.987 kb on + strand, within uspE at 95.988 kb on - strand, within uspE at 96.119 kb on - strand, within uspE at 96.121 kb on - strand, within uspE at 96.263 kb on - strand, within uspE at 96.263 kb on - strand, within uspE at 96.308 kb on - strand, within uspE at 96.760 kb on - strand at 96.764 kb on - strand at 96.769 kb on + strand at 96.783 kb on - strand at 96.806 kb on + strand at 96.811 kb on - strand at 96.986 kb on - strand at 97.067 kb on - strand, within fnr at 97.067 kb on - strand, within fnr at 97.312 kb on - strand, within fnr at 97.393 kb on - strand, within fnr at 97.393 kb on - strand, within fnr at 97.439 kb on - strand, within fnr at 97.439 kb on - strand, within fnr at 97.439 kb on - strand, within fnr at 97.479 kb on - strand, within fnr at 97.545 kb on - strand, within fnr at 97.545 kb on - strand, within fnr at 97.622 kb on + strand at 97.673 kb on + strand at 97.674 kb on - strand at 97.674 kb on - strand at 97.691 kb on - strand at 97.732 kb on + strand at 97.733 kb on - strand at 97.782 kb on - strand at 97.782 kb on - strand at 97.784 kb on - strand at 97.784 kb on - strand at 97.784 kb on - strand at 97.863 kb on - strand at 97.929 kb on + strand, within ogt at 98.069 kb on + strand, within ogt at 98.233 kb on - strand, within ogt at 98.284 kb on - strand, within ogt at 98.410 kb on + strand at 98.444 kb on - strand at 98.470 kb on - strand at 98.512 kb on + strand at 98.512 kb on + strand at 98.513 kb on - strand at 98.513 kb on - strand at 98.540 kb on - strand at 98.599 kb on - strand, within abgT at 98.616 kb on - strand, within abgT at 98.655 kb on + strand, within abgT at 98.661 kb on - strand, within abgT
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas14 remove 95,987 + uspE MCAODC_16025 0.18 +0.2 95,988 - uspE MCAODC_16025 0.18 -1.7 96,119 - uspE MCAODC_16025 0.32 +0.2 96,121 - uspE MCAODC_16025 0.32 -3.5 96,263 - uspE MCAODC_16025 0.47 +0.5 96,263 - uspE MCAODC_16025 0.47 -1.5 96,308 - uspE MCAODC_16025 0.51 -1.0 96,760 - +0.8 96,764 - +0.1 96,769 + -0.5 96,783 - +1.6 96,806 + -0.6 96,811 - -0.3 96,986 - -0.4 97,067 - fnr MCAODC_16030 0.19 +0.5 97,067 - fnr MCAODC_16030 0.19 +0.3 97,312 - fnr MCAODC_16030 0.52 +0.9 97,393 - fnr MCAODC_16030 0.63 +1.5 97,393 - fnr MCAODC_16030 0.63 -0.9 97,439 - fnr MCAODC_16030 0.69 +1.5 97,439 - fnr MCAODC_16030 0.69 -2.2 97,439 - fnr MCAODC_16030 0.69 +0.2 97,479 - fnr MCAODC_16030 0.74 -0.0 97,545 - fnr MCAODC_16030 0.83 +0.1 97,545 - fnr MCAODC_16030 0.83 +0.9 97,622 + +0.5 97,673 + -0.7 97,674 - +1.2 97,674 - -0.0 97,691 - -0.5 97,732 + -0.6 97,733 - -2.3 97,782 - +1.7 97,782 - +0.5 97,784 - +0.6 97,784 - -1.9 97,784 - +0.9 97,863 - +0.1 97,929 + ogt MCAODC_16035 0.12 -0.2 98,069 + ogt MCAODC_16035 0.39 -2.0 98,233 - ogt MCAODC_16035 0.71 -0.2 98,284 - ogt MCAODC_16035 0.81 +1.6 98,410 + -0.1 98,444 - -1.5 98,470 - +0.9 98,512 + -1.2 98,512 + +0.7 98,513 - +0.3 98,513 - -0.6 98,540 - -0.9 98,599 - abgT MCAODC_16040 0.13 +0.1 98,616 - abgT MCAODC_16040 0.15 -0.2 98,655 + abgT MCAODC_16040 0.17 +0.1 98,661 - abgT MCAODC_16040 0.17 +0.5
Or see this region's nucleotide sequence