Strain Fitness in Escherichia coli ECRC101 around MCAODC_12500

Experiment: WM_Bas14

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_Bas14
2,477,379	+	yffB	MCAODC_12490	0.39	-0.0
2,477,379	+	yffB	MCAODC_12490	0.39	-0.6
2,477,380	-	yffB	MCAODC_12490	0.40	+0.6
2,477,417	+	yffB	MCAODC_12490	0.50	+0.5
2,477,418	-	yffB	MCAODC_12490	0.50	-0.1
2,477,418	-	yffB	MCAODC_12490	0.50	+0.6
2,477,449	-	yffB	MCAODC_12490	0.59	+1.0
2,477,459	+	yffB	MCAODC_12490	0.62	-0.8
2,477,460	-	yffB	MCAODC_12490	0.62	+0.8
2,477,676	-				-0.4
2,477,691	+				-0.2
2,477,707	+				+0.8
2,477,742	+				-1.2
2,477,793	+				-0.4
2,477,793	+				+0.4
2,477,796	+				+0.0
2,477,796	+				-1.2
2,477,806	-				-1.0
2,477,811	+				+0.1
2,477,812	-				-0.3
2,477,861	+				+0.4
2,477,861	+				+0.5
2,477,861	+				+0.1
2,477,862	-				+0.8
2,477,864	+				-0.2
2,477,864	+				-1.3
2,477,865	-				-0.8
2,477,865	-				+0.4
2,477,868	+				+0.1
2,477,868	+				-0.3
2,477,869	-				+0.1
2,477,872	+				-1.0
2,477,872	+				-0.2
2,477,873	-				+0.1
2,477,892	+				+0.6
2,477,917	+				+1.2
2,477,917	+				+0.7
2,477,931	+				-1.2
2,477,932	-				+1.2
2,477,933	+				-2.4
2,477,934	-				-0.2
2,477,934	-				+0.0
2,477,955	+				-1.2
2,477,956	-				+1.2
2,477,959	+				+0.3
2,477,959	+				-0.6
2,477,959	+				+1.1
2,477,960	-				+0.2
2,477,961	+				+0.4
2,477,962	-				+0.2
2,477,974	+				+0.3
2,478,020	-	ypfM	MCAODC_12495	0.75	+1.4
2,478,028	+	ypfM	MCAODC_12495	0.88	+0.8
2,478,028	+	ypfM	MCAODC_12495	0.88	-1.6
2,478,029	-				+0.3
2,478,029	-				+0.1
2,478,049	+				-1.1
2,478,050	-				-1.1
2,478,135	-				+0.5
2,478,197	+				-0.4
2,478,197	+				+0.5
2,478,198	-				-1.1
2,478,198	-				-2.8
2,478,309	+				+1.2
2,478,309	+				+0.0
2,478,310	-				+0.1
2,478,341	-				-0.3
2,478,476	+	acrD	MCAODC_12500	0.11	-0.1
2,478,578	+	acrD	MCAODC_12500	0.14	+1.9
2,478,578	+	acrD	MCAODC_12500	0.14	-0.2
2,478,578	+	acrD	MCAODC_12500	0.14	+0.1
2,478,579	-	acrD	MCAODC_12500	0.14	+0.8
2,478,601	+	acrD	MCAODC_12500	0.15	+0.4
2,478,726	+	acrD	MCAODC_12500	0.19	+0.4
2,478,797	+	acrD	MCAODC_12500	0.21	-0.3
2,478,798	-	acrD	MCAODC_12500	0.21	-0.2
2,478,874	-	acrD	MCAODC_12500	0.24	-1.3
2,478,884	+	acrD	MCAODC_12500	0.24	+0.7
2,478,884	+	acrD	MCAODC_12500	0.24	-0.1
2,478,938	+	acrD	MCAODC_12500	0.26	+0.3
2,478,980	+	acrD	MCAODC_12500	0.27	-0.6
2,478,980	+	acrD	MCAODC_12500	0.27	-0.1
2,478,981	-	acrD	MCAODC_12500	0.27	-0.5
2,479,014	+	acrD	MCAODC_12500	0.28	+0.0
2,479,017	+	acrD	MCAODC_12500	0.28	-0.3
2,479,115	-	acrD	MCAODC_12500	0.32	+0.6
2,479,152	+	acrD	MCAODC_12500	0.33	-1.2
2,479,224	+	acrD	MCAODC_12500	0.35	+0.0
2,479,225	-	acrD	MCAODC_12500	0.35	+1.1
2,479,333	-	acrD	MCAODC_12500	0.39	+1.5
2,479,457	+	acrD	MCAODC_12500	0.43	+0.8
2,479,458	-	acrD	MCAODC_12500	0.43	+0.1
2,479,458	-	acrD	MCAODC_12500	0.43	-0.3
2,479,530	+	acrD	MCAODC_12500	0.45	-1.3
2,479,530	+	acrD	MCAODC_12500	0.45	+0.5
2,479,531	-	acrD	MCAODC_12500	0.45	+1.8
2,479,531	-	acrD	MCAODC_12500	0.45	+0.4
2,479,534	-	acrD	MCAODC_12500	0.45	+1.0
2,479,616	+	acrD	MCAODC_12500	0.48	+0.1
2,479,617	-	acrD	MCAODC_12500	0.48	-0.8
2,479,638	+	acrD	MCAODC_12500	0.48	+0.8
2,479,689	+	acrD	MCAODC_12500	0.50	+0.2
2,479,755	+	acrD	MCAODC_12500	0.52	-1.4
2,479,755	+	acrD	MCAODC_12500	0.52	-0.0
2,479,759	+	acrD	MCAODC_12500	0.52	-0.2
2,479,833	+	acrD	MCAODC_12500	0.55	-0.6
2,479,848	-	acrD	MCAODC_12500	0.55	+0.8
2,479,885	+	acrD	MCAODC_12500	0.56	+2.0
2,479,885	+	acrD	MCAODC_12500	0.56	+2.3
2,479,885	+	acrD	MCAODC_12500	0.56	+0.5
2,479,989	+	acrD	MCAODC_12500	0.60	+0.5
2,479,992	+	acrD	MCAODC_12500	0.60	-0.4
2,479,992	+	acrD	MCAODC_12500	0.60	+0.1
2,479,992	+	acrD	MCAODC_12500	0.60	-1.4
2,479,992	+	acrD	MCAODC_12500	0.60	-0.0
2,479,992	+	acrD	MCAODC_12500	0.60	+0.9
2,479,992	+	acrD	MCAODC_12500	0.60	-0.2
2,479,993	-	acrD	MCAODC_12500	0.60	-0.3
2,479,993	-	acrD	MCAODC_12500	0.60	+0.4
2,480,069	-	acrD	MCAODC_12500	0.62	-1.8
2,480,096	+	acrD	MCAODC_12500	0.63	-0.0
2,480,180	+	acrD	MCAODC_12500	0.66	-0.7
2,480,181	-	acrD	MCAODC_12500	0.66	+0.1
2,480,181	-	acrD	MCAODC_12500	0.66	+2.2
2,480,184	+	acrD	MCAODC_12500	0.66	-0.4
2,480,185	-	acrD	MCAODC_12500	0.66	+1.5
2,480,279	+	acrD	MCAODC_12500	0.69	-0.7
2,480,412	+	acrD	MCAODC_12500	0.73	+0.0
2,480,417	+	acrD	MCAODC_12500	0.73	+1.4
2,480,418	-	acrD	MCAODC_12500	0.73	+1.1
2,480,468	-	acrD	MCAODC_12500	0.75	+0.6
2,480,468	-	acrD	MCAODC_12500	0.75	+0.1
2,480,468	-	acrD	MCAODC_12500	0.75	+0.5
2,480,692	-	acrD	MCAODC_12500	0.82	+3.4
2,480,703	-	acrD	MCAODC_12500	0.83	-0.3
2,480,777	+	acrD	MCAODC_12500	0.85	-0.3
2,480,778	-	acrD	MCAODC_12500	0.85	+0.5
2,480,778	-	acrD	MCAODC_12500	0.85	+0.2
2,480,778	-	acrD	MCAODC_12500	0.85	+0.0
2,480,797	-	acrD	MCAODC_12500	0.86	+1.8
2,480,926	+	acrD	MCAODC_12500	0.90	-0.4
2,481,015	+				-1.5
2,481,015	+				+0.2
2,481,015	+				-1.6
2,481,015	+				-0.2
2,481,015	+				+0.3
2,481,015	+				-0.2
2,481,015	+				+0.0
2,481,016	-				+0.1
2,481,016	-				+0.6
2,481,016	-				+1.0
2,481,016	-				-0.2
2,481,016	-				-0.6
2,481,017	+				+0.7
2,481,017	+				-2.0
2,481,017	+				-0.3
2,481,017	+				+0.7
2,481,017	+				+0.3
2,481,017	+				+1.1
2,481,017	+				+1.5
2,481,017	+				-0.5
2,481,017	+				+0.9
2,481,018	-				-1.7
2,481,018	-				+0.4
2,481,018	-				-0.3
2,481,018	-				-0.8
2,481,018	-				+0.8
2,481,018	-				-0.2
2,481,018	-				+0.2
2,481,018	-				-0.4
2,481,018	-				-1.5
2,481,018	-				-0.8
2,481,042	+				+0.0
2,481,281	-				+0.0
2,481,281	-				-0.2
2,481,342	+				+0.0
2,481,343	-				-0.2
2,481,348	-				+1.4
2,481,352	+				+0.7
2,481,353	-				+1.0
2,481,353	-				+1.8
2,481,365	+				-0.4
2,481,365	+				+1.8
2,481,365	+				+0.6
2,481,366	-				+0.4
2,481,366	-				+1.1
2,481,377	+				+1.4
2,481,378	-				-0.1
2,481,387	+				-0.3
2,481,388	-				-0.2
2,481,401	+				-0.4
2,481,411	+				-0.4
2,481,411	+				-0.7
2,481,411	+				-2.6
2,481,412	-				+0.6
2,481,451	+				+0.4
2,481,452	-				+1.2
2,481,452	-				+0.1
2,481,454	+				+0.7
2,481,455	-				-0.1
2,481,461	+				-1.0
2,481,544	-				+0.3
2,481,596	-	narQ	MCAODC_12505	0.11	+1.0
2,481,596	-	narQ	MCAODC_12505	0.11	+0.2
2,481,597	+	narQ	MCAODC_12505	0.11	+0.5
2,481,782	+	narQ	MCAODC_12505	0.22	-0.3
2,481,788	-	narQ	MCAODC_12505	0.22	+1.4
2,481,788	-	narQ	MCAODC_12505	0.22	-0.3
2,481,863	+	narQ	MCAODC_12505	0.27	+0.5
2,481,863	+	narQ	MCAODC_12505	0.27	-1.0
2,481,863	+	narQ	MCAODC_12505	0.27	+1.8
2,481,910	+	narQ	MCAODC_12505	0.29	-2.1
2,481,910	+	narQ	MCAODC_12505	0.29	+1.2
2,481,911	-	narQ	MCAODC_12505	0.29	-0.6
2,481,911	-	narQ	MCAODC_12505	0.29	+0.2
2,481,928	+	narQ	MCAODC_12505	0.30	+0.1
2,481,928	+	narQ	MCAODC_12505	0.30	-0.3
2,481,929	-	narQ	MCAODC_12505	0.31	-0.8
2,481,954	-	narQ	MCAODC_12505	0.32	-2.5
2,481,967	+	narQ	MCAODC_12505	0.33	+0.8
2,481,971	+	narQ	MCAODC_12505	0.33	-0.0
2,481,971	+	narQ	MCAODC_12505	0.33	+0.7
2,481,971	+	narQ	MCAODC_12505	0.33	+0.5
2,481,971	+	narQ	MCAODC_12505	0.33	-0.9
2,481,971	+	narQ	MCAODC_12505	0.33	+0.2
2,481,972	-	narQ	MCAODC_12505	0.33	-0.9
2,481,972	-	narQ	MCAODC_12505	0.33	+0.0
2,481,976	-	narQ	MCAODC_12505	0.33	-0.4
2,481,976	-	narQ	MCAODC_12505	0.33	+1.0
2,482,043	+	narQ	MCAODC_12505	0.37	-0.7
2,482,044	-	narQ	MCAODC_12505	0.37	+0.5
2,482,072	+	narQ	MCAODC_12505	0.39	-0.6
2,482,077	+	narQ	MCAODC_12505	0.39	-0.0
2,482,111	+	narQ	MCAODC_12505	0.41	-1.0