Experiment: WM_Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt deaD and mtr are separated by 153 nucleotides mtr and yhbW are separated by 116 nucleotides
MCAODC_08675: deaD - ATP-dependent RNA helicase DeaD, at 1,735,838 to 1,737,727
deaD
MCAODC_08680: mtr - tryptophan permease, at 1,737,881 to 1,739,125
mtr
MCAODC_08685: yhbW - luciferase-like monooxygenase, at 1,739,242 to 1,740,249
yhbW
Position (kb) 1737
1738
1739
1740 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1736.926 kb on + strand, within deaD at 1737.145 kb on + strand, within deaD at 1737.302 kb on + strand, within deaD at 1737.302 kb on + strand, within deaD at 1737.303 kb on - strand, within deaD at 1737.303 kb on - strand, within deaD at 1737.389 kb on + strand, within deaD at 1737.403 kb on + strand, within deaD at 1737.403 kb on + strand, within deaD at 1737.403 kb on + strand, within deaD at 1737.403 kb on + strand, within deaD at 1737.403 kb on + strand, within deaD at 1737.404 kb on - strand, within deaD at 1737.445 kb on + strand, within deaD at 1737.478 kb on + strand, within deaD at 1737.505 kb on + strand, within deaD at 1737.513 kb on + strand, within deaD at 1737.513 kb on + strand, within deaD at 1737.535 kb on + strand, within deaD at 1737.535 kb on + strand, within deaD at 1737.598 kb on + strand at 1737.598 kb on + strand at 1737.598 kb on + strand at 1737.725 kb on + strand at 1737.755 kb on + strand at 1737.761 kb on - strand at 1737.763 kb on + strand at 1737.765 kb on + strand at 1737.765 kb on + strand at 1737.765 kb on + strand at 1737.765 kb on + strand at 1737.765 kb on + strand at 1737.765 kb on + strand at 1737.766 kb on - strand at 1737.766 kb on - strand at 1737.766 kb on - strand at 1737.767 kb on + strand at 1737.767 kb on + strand at 1737.767 kb on + strand at 1737.767 kb on + strand at 1737.768 kb on - strand at 1737.768 kb on - strand at 1737.839 kb on + strand at 1737.839 kb on + strand at 1737.839 kb on + strand at 1737.840 kb on - strand at 1737.840 kb on - strand at 1737.891 kb on + strand at 1737.892 kb on - strand at 1738.031 kb on - strand, within mtr at 1738.042 kb on + strand, within mtr at 1738.086 kb on - strand, within mtr at 1738.178 kb on + strand, within mtr at 1738.178 kb on + strand, within mtr at 1738.178 kb on + strand, within mtr at 1738.178 kb on + strand, within mtr at 1738.178 kb on + strand, within mtr at 1738.178 kb on + strand, within mtr at 1738.179 kb on - strand, within mtr at 1738.179 kb on - strand, within mtr at 1738.179 kb on - strand, within mtr at 1738.179 kb on - strand, within mtr at 1738.180 kb on + strand, within mtr at 1738.180 kb on + strand, within mtr at 1738.190 kb on + strand, within mtr at 1738.190 kb on + strand, within mtr at 1738.190 kb on + strand, within mtr at 1738.190 kb on + strand, within mtr at 1738.190 kb on + strand, within mtr at 1738.190 kb on + strand, within mtr at 1738.190 kb on + strand, within mtr at 1738.190 kb on + strand, within mtr at 1738.190 kb on + strand, within mtr at 1738.190 kb on + strand, within mtr at 1738.190 kb on + strand, within mtr at 1738.190 kb on + strand, within mtr at 1738.190 kb on + strand, within mtr at 1738.191 kb on - strand, within mtr at 1738.191 kb on - strand, within mtr at 1738.191 kb on - strand, within mtr at 1738.191 kb on - strand, within mtr at 1738.191 kb on - strand, within mtr at 1738.191 kb on - strand, within mtr at 1738.191 kb on - strand, within mtr at 1738.196 kb on + strand, within mtr at 1738.197 kb on - strand, within mtr at 1738.198 kb on + strand, within mtr at 1738.198 kb on + strand, within mtr at 1738.199 kb on - strand, within mtr at 1738.248 kb on + strand, within mtr at 1738.248 kb on + strand, within mtr at 1738.249 kb on - strand, within mtr at 1738.318 kb on + strand, within mtr at 1738.318 kb on + strand, within mtr at 1738.347 kb on + strand, within mtr at 1738.347 kb on + strand, within mtr at 1738.347 kb on + strand, within mtr at 1738.348 kb on - strand, within mtr at 1738.367 kb on - strand, within mtr at 1738.448 kb on + strand, within mtr at 1738.448 kb on + strand, within mtr at 1738.507 kb on + strand, within mtr at 1738.529 kb on + strand, within mtr at 1738.529 kb on + strand, within mtr at 1738.530 kb on - strand, within mtr at 1738.530 kb on - strand, within mtr at 1738.530 kb on - strand, within mtr at 1738.530 kb on - strand, within mtr at 1738.533 kb on - strand, within mtr at 1738.571 kb on + strand, within mtr at 1738.571 kb on + strand, within mtr at 1738.571 kb on + strand, within mtr at 1738.572 kb on - strand, within mtr at 1738.572 kb on - strand, within mtr at 1738.572 kb on - strand, within mtr at 1738.600 kb on + strand, within mtr at 1738.600 kb on + strand, within mtr at 1738.600 kb on + strand, within mtr at 1738.627 kb on + strand, within mtr at 1738.649 kb on - strand, within mtr at 1738.672 kb on + strand, within mtr at 1738.675 kb on + strand, within mtr at 1738.675 kb on + strand, within mtr at 1738.675 kb on + strand, within mtr at 1738.675 kb on + strand, within mtr at 1738.675 kb on + strand, within mtr at 1738.675 kb on + strand, within mtr at 1738.689 kb on + strand, within mtr at 1738.698 kb on + strand, within mtr at 1738.698 kb on + strand, within mtr at 1738.720 kb on + strand, within mtr at 1738.802 kb on + strand, within mtr at 1738.803 kb on - strand, within mtr at 1738.916 kb on + strand, within mtr at 1738.917 kb on - strand, within mtr at 1738.928 kb on + strand, within mtr at 1738.928 kb on + strand, within mtr at 1738.945 kb on + strand, within mtr at 1738.946 kb on - strand, within mtr at 1738.994 kb on - strand, within mtr at 1739.044 kb on + strand at 1739.044 kb on + strand at 1739.086 kb on + strand at 1739.102 kb on - strand at 1739.117 kb on + strand at 1739.118 kb on - strand at 1739.118 kb on - strand at 1739.157 kb on + strand at 1739.182 kb on + strand at 1739.183 kb on - strand at 1739.244 kb on - strand at 1739.262 kb on + strand at 1739.328 kb on + strand at 1739.406 kb on + strand, within yhbW at 1739.407 kb on - strand, within yhbW at 1739.407 kb on - strand, within yhbW at 1739.461 kb on - strand, within yhbW at 1739.533 kb on - strand, within yhbW at 1739.574 kb on + strand, within yhbW at 1739.574 kb on + strand, within yhbW at 1739.575 kb on - strand, within yhbW at 1739.575 kb on - strand, within yhbW at 1739.575 kb on - strand, within yhbW at 1739.594 kb on + strand, within yhbW at 1739.740 kb on + strand, within yhbW at 1739.768 kb on + strand, within yhbW at 1739.879 kb on - strand, within yhbW at 1739.946 kb on - strand, within yhbW at 1739.952 kb on + strand, within yhbW at 1739.953 kb on - strand, within yhbW at 1739.953 kb on - strand, within yhbW at 1739.953 kb on - strand, within yhbW at 1739.953 kb on - strand, within yhbW at 1739.953 kb on - strand, within yhbW at 1740.039 kb on + strand, within yhbW at 1740.040 kb on - strand, within yhbW at 1740.054 kb on - strand, within yhbW at 1740.096 kb on + strand, within yhbW at 1740.096 kb on + strand, within yhbW at 1740.119 kb on + strand, within yhbW
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas14 remove 1,736,926 + deaD MCAODC_08675 0.58 +1.0 1,737,145 + deaD MCAODC_08675 0.69 -0.3 1,737,302 + deaD MCAODC_08675 0.77 +0.3 1,737,302 + deaD MCAODC_08675 0.77 +2.0 1,737,303 - deaD MCAODC_08675 0.78 -0.1 1,737,303 - deaD MCAODC_08675 0.78 +0.5 1,737,389 + deaD MCAODC_08675 0.82 +0.3 1,737,403 + deaD MCAODC_08675 0.83 +0.0 1,737,403 + deaD MCAODC_08675 0.83 -0.1 1,737,403 + deaD MCAODC_08675 0.83 -1.1 1,737,403 + deaD MCAODC_08675 0.83 +0.0 1,737,403 + deaD MCAODC_08675 0.83 +0.5 1,737,404 - deaD MCAODC_08675 0.83 -3.7 1,737,445 + deaD MCAODC_08675 0.85 -0.3 1,737,478 + deaD MCAODC_08675 0.87 -0.2 1,737,505 + deaD MCAODC_08675 0.88 -0.3 1,737,513 + deaD MCAODC_08675 0.89 +0.3 1,737,513 + deaD MCAODC_08675 0.89 +0.3 1,737,535 + deaD MCAODC_08675 0.90 +1.1 1,737,535 + deaD MCAODC_08675 0.90 -0.0 1,737,598 + +0.3 1,737,598 + +0.6 1,737,598 + +0.5 1,737,725 + -0.8 1,737,755 + -0.4 1,737,761 - +0.6 1,737,763 + +1.8 1,737,765 + -0.3 1,737,765 + +0.6 1,737,765 + +0.0 1,737,765 + +0.1 1,737,765 + -1.3 1,737,765 + +0.6 1,737,766 - -1.0 1,737,766 - -1.8 1,737,766 - +0.6 1,737,767 + +0.3 1,737,767 + +0.0 1,737,767 + -1.3 1,737,767 + -0.2 1,737,768 - +1.6 1,737,768 - -0.7 1,737,839 + -0.2 1,737,839 + -0.4 1,737,839 + +1.2 1,737,840 - -0.3 1,737,840 - -1.1 1,737,891 + -0.9 1,737,892 - -1.2 1,738,031 - mtr MCAODC_08680 0.12 -0.1 1,738,042 + mtr MCAODC_08680 0.13 -1.9 1,738,086 - mtr MCAODC_08680 0.16 +0.1 1,738,178 + mtr MCAODC_08680 0.24 -1.1 1,738,178 + mtr MCAODC_08680 0.24 +0.7 1,738,178 + mtr MCAODC_08680 0.24 +1.0 1,738,178 + mtr MCAODC_08680 0.24 -0.7 1,738,178 + mtr MCAODC_08680 0.24 -0.1 1,738,178 + mtr MCAODC_08680 0.24 +0.3 1,738,179 - mtr MCAODC_08680 0.24 -0.3 1,738,179 - mtr MCAODC_08680 0.24 -0.2 1,738,179 - mtr MCAODC_08680 0.24 -0.8 1,738,179 - mtr MCAODC_08680 0.24 +0.4 1,738,180 + mtr MCAODC_08680 0.24 +0.7 1,738,180 + mtr MCAODC_08680 0.24 +1.0 1,738,190 + mtr MCAODC_08680 0.25 +1.2 1,738,190 + mtr MCAODC_08680 0.25 +1.1 1,738,190 + mtr MCAODC_08680 0.25 +0.7 1,738,190 + mtr MCAODC_08680 0.25 -0.5 1,738,190 + mtr MCAODC_08680 0.25 +0.5 1,738,190 + mtr MCAODC_08680 0.25 -0.2 1,738,190 + mtr MCAODC_08680 0.25 +0.3 1,738,190 + mtr MCAODC_08680 0.25 +0.1 1,738,190 + mtr MCAODC_08680 0.25 +0.3 1,738,190 + mtr MCAODC_08680 0.25 +1.8 1,738,190 + mtr MCAODC_08680 0.25 -0.5 1,738,190 + mtr MCAODC_08680 0.25 -0.5 1,738,190 + mtr MCAODC_08680 0.25 +1.0 1,738,191 - mtr MCAODC_08680 0.25 -0.3 1,738,191 - mtr MCAODC_08680 0.25 +0.2 1,738,191 - mtr MCAODC_08680 0.25 -0.8 1,738,191 - mtr MCAODC_08680 0.25 +0.4 1,738,191 - mtr MCAODC_08680 0.25 +1.3 1,738,191 - mtr MCAODC_08680 0.25 -0.3 1,738,191 - mtr MCAODC_08680 0.25 -0.2 1,738,196 + mtr MCAODC_08680 0.25 +1.1 1,738,197 - mtr MCAODC_08680 0.25 +0.7 1,738,198 + mtr MCAODC_08680 0.25 -0.2 1,738,198 + mtr MCAODC_08680 0.25 -0.7 1,738,199 - mtr MCAODC_08680 0.26 -1.0 1,738,248 + mtr MCAODC_08680 0.29 -0.5 1,738,248 + mtr MCAODC_08680 0.29 +1.0 1,738,249 - mtr MCAODC_08680 0.30 +0.7 1,738,318 + mtr MCAODC_08680 0.35 +0.7 1,738,318 + mtr MCAODC_08680 0.35 -1.6 1,738,347 + mtr MCAODC_08680 0.37 -0.2 1,738,347 + mtr MCAODC_08680 0.37 -0.1 1,738,347 + mtr MCAODC_08680 0.37 -1.5 1,738,348 - mtr MCAODC_08680 0.38 +0.8 1,738,367 - mtr MCAODC_08680 0.39 +1.1 1,738,448 + mtr MCAODC_08680 0.46 +0.4 1,738,448 + mtr MCAODC_08680 0.46 +1.0 1,738,507 + mtr MCAODC_08680 0.50 +0.2 1,738,529 + mtr MCAODC_08680 0.52 +0.1 1,738,529 + mtr MCAODC_08680 0.52 +0.8 1,738,530 - mtr MCAODC_08680 0.52 +0.7 1,738,530 - mtr MCAODC_08680 0.52 +0.4 1,738,530 - mtr MCAODC_08680 0.52 +0.3 1,738,530 - mtr MCAODC_08680 0.52 +0.5 1,738,533 - mtr MCAODC_08680 0.52 -0.5 1,738,571 + mtr MCAODC_08680 0.55 -0.5 1,738,571 + mtr MCAODC_08680 0.55 -1.5 1,738,571 + mtr MCAODC_08680 0.55 +1.0 1,738,572 - mtr MCAODC_08680 0.56 +0.1 1,738,572 - mtr MCAODC_08680 0.56 -0.8 1,738,572 - mtr MCAODC_08680 0.56 -0.1 1,738,600 + mtr MCAODC_08680 0.58 +0.7 1,738,600 + mtr MCAODC_08680 0.58 +1.1 1,738,600 + mtr MCAODC_08680 0.58 -0.3 1,738,627 + mtr MCAODC_08680 0.60 +0.3 1,738,649 - mtr MCAODC_08680 0.62 +0.1 1,738,672 + mtr MCAODC_08680 0.64 +0.1 1,738,675 + mtr MCAODC_08680 0.64 -0.8 1,738,675 + mtr MCAODC_08680 0.64 -0.5 1,738,675 + mtr MCAODC_08680 0.64 -0.4 1,738,675 + mtr MCAODC_08680 0.64 -0.9 1,738,675 + mtr MCAODC_08680 0.64 -0.4 1,738,675 + mtr MCAODC_08680 0.64 +0.1 1,738,689 + mtr MCAODC_08680 0.65 +0.1 1,738,698 + mtr MCAODC_08680 0.66 +0.8 1,738,698 + mtr MCAODC_08680 0.66 +0.5 1,738,720 + mtr MCAODC_08680 0.67 -0.2 1,738,802 + mtr MCAODC_08680 0.74 -0.1 1,738,803 - mtr MCAODC_08680 0.74 -1.0 1,738,916 + mtr MCAODC_08680 0.83 -0.2 1,738,917 - mtr MCAODC_08680 0.83 -0.8 1,738,928 + mtr MCAODC_08680 0.84 -0.2 1,738,928 + mtr MCAODC_08680 0.84 -2.0 1,738,945 + mtr MCAODC_08680 0.85 +0.6 1,738,946 - mtr MCAODC_08680 0.86 +0.5 1,738,994 - mtr MCAODC_08680 0.89 -0.3 1,739,044 + -0.3 1,739,044 + -0.3 1,739,086 + +0.7 1,739,102 - +1.5 1,739,117 + -0.1 1,739,118 - +0.2 1,739,118 - +0.4 1,739,157 + +0.1 1,739,182 + -0.1 1,739,183 - +0.1 1,739,244 - +0.9 1,739,262 + -0.0 1,739,328 + -0.1 1,739,406 + yhbW MCAODC_08685 0.16 -0.0 1,739,407 - yhbW MCAODC_08685 0.16 +0.2 1,739,407 - yhbW MCAODC_08685 0.16 +0.6 1,739,461 - yhbW MCAODC_08685 0.22 +0.5 1,739,533 - yhbW MCAODC_08685 0.29 +0.3 1,739,574 + yhbW MCAODC_08685 0.33 +0.6 1,739,574 + yhbW MCAODC_08685 0.33 +0.4 1,739,575 - yhbW MCAODC_08685 0.33 +0.1 1,739,575 - yhbW MCAODC_08685 0.33 -0.2 1,739,575 - yhbW MCAODC_08685 0.33 +1.2 1,739,594 + yhbW MCAODC_08685 0.35 -0.5 1,739,740 + yhbW MCAODC_08685 0.49 +1.5 1,739,768 + yhbW MCAODC_08685 0.52 -0.0 1,739,879 - yhbW MCAODC_08685 0.63 +0.5 1,739,946 - yhbW MCAODC_08685 0.70 -0.2 1,739,952 + yhbW MCAODC_08685 0.70 -0.6 1,739,953 - yhbW MCAODC_08685 0.71 -1.7 1,739,953 - yhbW MCAODC_08685 0.71 +0.2 1,739,953 - yhbW MCAODC_08685 0.71 -0.1 1,739,953 - yhbW MCAODC_08685 0.71 -2.1 1,739,953 - yhbW MCAODC_08685 0.71 +0.0 1,740,039 + yhbW MCAODC_08685 0.79 +0.8 1,740,040 - yhbW MCAODC_08685 0.79 +0.9 1,740,054 - yhbW MCAODC_08685 0.81 +0.3 1,740,096 + yhbW MCAODC_08685 0.85 -0.7 1,740,096 + yhbW MCAODC_08685 0.85 +0.7 1,740,119 + yhbW MCAODC_08685 0.87 -0.9
Or see this region's nucleotide sequence