Experiment: WM_Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trkA and rsmB are separated by 21 nucleotides rsmB and fmt are separated by 45 nucleotides
MCAODC_08045: trkA - Trk system potassium transporter TrkA, at 1,613,289 to 1,614,665
trkA
MCAODC_08050: rsmB - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 1,614,687 to 1,615,976
rsmB
MCAODC_08055: fmt - methionyl-tRNA formyltransferase, at 1,616,022 to 1,616,969
fmt
Position (kb)
1614
1615
1616 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1614.831 kb on - strand, within rsmB at 1614.831 kb on - strand, within rsmB at 1614.863 kb on - strand, within rsmB at 1614.863 kb on - strand, within rsmB at 1614.863 kb on - strand, within rsmB at 1614.966 kb on - strand, within rsmB at 1614.966 kb on - strand, within rsmB at 1614.966 kb on - strand, within rsmB at 1614.966 kb on - strand, within rsmB at 1614.966 kb on - strand, within rsmB at 1614.966 kb on - strand, within rsmB at 1615.018 kb on - strand, within rsmB at 1615.095 kb on - strand, within rsmB at 1615.095 kb on - strand, within rsmB at 1615.095 kb on - strand, within rsmB at 1615.095 kb on - strand, within rsmB at 1615.095 kb on - strand, within rsmB at 1615.108 kb on - strand, within rsmB at 1615.118 kb on - strand, within rsmB at 1615.351 kb on - strand, within rsmB at 1615.437 kb on - strand, within rsmB at 1615.443 kb on - strand, within rsmB at 1615.612 kb on - strand, within rsmB at 1615.615 kb on - strand, within rsmB at 1615.788 kb on - strand, within rsmB at 1615.788 kb on - strand, within rsmB at 1615.804 kb on - strand, within rsmB at 1615.962 kb on - strand at 1615.977 kb on - strand at 1615.981 kb on - strand at 1615.981 kb on - strand at 1616.007 kb on + strand at 1616.008 kb on - strand at 1616.021 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas14 remove 1,614,831 - rsmB MCAODC_08050 0.11 -1.2 1,614,831 - rsmB MCAODC_08050 0.11 +0.2 1,614,863 - rsmB MCAODC_08050 0.14 -0.8 1,614,863 - rsmB MCAODC_08050 0.14 +0.4 1,614,863 - rsmB MCAODC_08050 0.14 +3.4 1,614,966 - rsmB MCAODC_08050 0.22 +0.2 1,614,966 - rsmB MCAODC_08050 0.22 +0.2 1,614,966 - rsmB MCAODC_08050 0.22 -0.6 1,614,966 - rsmB MCAODC_08050 0.22 -1.1 1,614,966 - rsmB MCAODC_08050 0.22 +0.1 1,614,966 - rsmB MCAODC_08050 0.22 -0.3 1,615,018 - rsmB MCAODC_08050 0.26 -0.2 1,615,095 - rsmB MCAODC_08050 0.32 +0.4 1,615,095 - rsmB MCAODC_08050 0.32 +0.1 1,615,095 - rsmB MCAODC_08050 0.32 -0.4 1,615,095 - rsmB MCAODC_08050 0.32 +0.4 1,615,095 - rsmB MCAODC_08050 0.32 +0.6 1,615,108 - rsmB MCAODC_08050 0.33 +0.4 1,615,118 - rsmB MCAODC_08050 0.33 +1.0 1,615,351 - rsmB MCAODC_08050 0.51 +0.2 1,615,437 - rsmB MCAODC_08050 0.58 +0.6 1,615,443 - rsmB MCAODC_08050 0.59 -1.7 1,615,612 - rsmB MCAODC_08050 0.72 -0.7 1,615,615 - rsmB MCAODC_08050 0.72 -1.7 1,615,788 - rsmB MCAODC_08050 0.85 -0.9 1,615,788 - rsmB MCAODC_08050 0.85 -0.1 1,615,804 - rsmB MCAODC_08050 0.87 +2.4 1,615,962 - -1.1 1,615,977 - +1.0 1,615,981 - -0.3 1,615,981 - +0.6 1,616,007 + -0.6 1,616,008 - +0.6 1,616,021 - -0.3
Or see this region's nucleotide sequence