Experiment: WM_Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_03545 and zur are separated by 311 nucleotides zur and yjbJ are separated by 41 nucleotides yjbJ and dinF are separated by 115 nucleotides
MCAODC_03545: MCAODC_03545 - DUF2713 domain-containing protein, at 710,458 to 711,414
_03545
MCAODC_03550: zur - zinc uptake transcriptional repressor Zur, at 711,726 to 712,241
zur
MCAODC_03555: yjbJ - UPF0337 protein YjbJ, at 712,283 to 712,492
yjbJ
MCAODC_03560: dinF - MATE family efflux transporter DinF, at 712,608 to 713,933
dinF
Position (kb) 711
712
713 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 710.905 kb on + strand, within MCAODC_03545 at 710.906 kb on - strand, within MCAODC_03545 at 710.940 kb on + strand, within MCAODC_03545 at 710.947 kb on - strand, within MCAODC_03545 at 710.962 kb on + strand, within MCAODC_03545 at 711.019 kb on + strand, within MCAODC_03545 at 711.020 kb on - strand, within MCAODC_03545 at 711.057 kb on + strand, within MCAODC_03545 at 711.061 kb on - strand, within MCAODC_03545 at 711.148 kb on - strand, within MCAODC_03545 at 711.247 kb on + strand, within MCAODC_03545 at 711.265 kb on - strand, within MCAODC_03545 at 711.384 kb on - strand at 711.403 kb on + strand at 711.451 kb on + strand at 711.476 kb on + strand at 711.514 kb on - strand at 711.576 kb on - strand at 711.579 kb on - strand at 711.595 kb on + strand at 711.596 kb on - strand at 711.623 kb on - strand at 711.752 kb on - strand at 711.752 kb on - strand at 711.754 kb on + strand at 711.755 kb on - strand at 711.785 kb on + strand, within zur at 711.786 kb on - strand, within zur at 711.858 kb on + strand, within zur at 711.859 kb on - strand, within zur at 711.859 kb on - strand, within zur at 711.978 kb on + strand, within zur at 711.978 kb on + strand, within zur at 711.978 kb on + strand, within zur at 711.978 kb on + strand, within zur at 711.978 kb on + strand, within zur at 711.979 kb on - strand, within zur at 711.979 kb on - strand, within zur at 712.014 kb on - strand, within zur at 712.022 kb on + strand, within zur at 712.022 kb on + strand, within zur at 712.022 kb on + strand, within zur at 712.022 kb on + strand, within zur at 712.022 kb on + strand, within zur at 712.023 kb on - strand, within zur at 712.023 kb on - strand, within zur at 712.023 kb on - strand, within zur at 712.023 kb on - strand, within zur at 712.029 kb on - strand, within zur at 712.029 kb on - strand, within zur at 712.091 kb on + strand, within zur at 712.091 kb on + strand, within zur at 712.092 kb on - strand, within zur at 712.127 kb on + strand, within zur at 712.128 kb on - strand, within zur at 712.249 kb on + strand at 712.249 kb on + strand at 712.249 kb on + strand at 712.250 kb on - strand at 712.250 kb on - strand at 712.250 kb on - strand at 712.250 kb on - strand at 712.250 kb on - strand at 712.250 kb on - strand at 712.250 kb on - strand at 712.250 kb on - strand at 712.259 kb on + strand at 712.259 kb on + strand at 712.260 kb on - strand at 712.260 kb on - strand at 712.260 kb on - strand at 712.281 kb on - strand at 712.281 kb on - strand at 712.281 kb on - strand at 712.284 kb on + strand at 712.293 kb on + strand at 712.294 kb on - strand at 712.353 kb on + strand, within yjbJ at 712.370 kb on - strand, within yjbJ at 712.391 kb on - strand, within yjbJ at 712.391 kb on - strand, within yjbJ at 712.408 kb on + strand, within yjbJ at 712.408 kb on + strand, within yjbJ at 712.409 kb on - strand, within yjbJ at 712.409 kb on - strand, within yjbJ at 712.447 kb on + strand, within yjbJ at 712.493 kb on - strand at 712.493 kb on - strand at 712.511 kb on - strand at 712.511 kb on - strand at 712.528 kb on - strand at 712.556 kb on + strand at 712.556 kb on + strand at 712.556 kb on + strand at 712.556 kb on + strand at 712.556 kb on + strand at 712.562 kb on + strand at 712.562 kb on + strand at 712.563 kb on - strand at 712.585 kb on + strand at 712.586 kb on - strand at 712.603 kb on - strand at 712.628 kb on + strand at 712.655 kb on + strand at 712.655 kb on + strand at 712.656 kb on - strand at 712.656 kb on - strand at 712.696 kb on - strand at 712.736 kb on + strand at 712.776 kb on - strand, within dinF at 712.782 kb on - strand, within dinF at 712.809 kb on + strand, within dinF at 712.810 kb on - strand, within dinF at 712.811 kb on + strand, within dinF at 712.811 kb on + strand, within dinF at 712.812 kb on - strand, within dinF at 712.812 kb on - strand, within dinF at 712.812 kb on - strand, within dinF at 712.871 kb on + strand, within dinF at 712.872 kb on - strand, within dinF at 712.872 kb on - strand, within dinF at 712.876 kb on + strand, within dinF at 712.949 kb on - strand, within dinF at 712.966 kb on - strand, within dinF at 712.966 kb on - strand, within dinF at 712.971 kb on + strand, within dinF at 712.972 kb on - strand, within dinF at 713.039 kb on - strand, within dinF at 713.039 kb on - strand, within dinF at 713.039 kb on - strand, within dinF at 713.039 kb on - strand, within dinF at 713.163 kb on + strand, within dinF at 713.165 kb on - strand, within dinF at 713.213 kb on + strand, within dinF at 713.214 kb on - strand, within dinF at 713.222 kb on + strand, within dinF
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas14 remove 710,905 + MCAODC_03545 0.47 -0.9 710,906 - MCAODC_03545 0.47 -0.3 710,940 + MCAODC_03545 0.50 -0.8 710,947 - MCAODC_03545 0.51 +0.8 710,962 + MCAODC_03545 0.53 -1.1 711,019 + MCAODC_03545 0.59 -0.6 711,020 - MCAODC_03545 0.59 +1.0 711,057 + MCAODC_03545 0.63 -0.7 711,061 - MCAODC_03545 0.63 +0.7 711,148 - MCAODC_03545 0.72 +0.4 711,247 + MCAODC_03545 0.82 -0.3 711,265 - MCAODC_03545 0.84 -1.1 711,384 - +0.8 711,403 + -0.3 711,451 + -0.2 711,476 + -0.8 711,514 - +0.1 711,576 - +0.6 711,579 - -0.1 711,595 + -1.6 711,596 - +0.3 711,623 - -1.2 711,752 - +0.2 711,752 - -0.4 711,754 + -0.3 711,755 - -2.4 711,785 + zur MCAODC_03550 0.11 +2.8 711,786 - zur MCAODC_03550 0.12 +0.1 711,858 + zur MCAODC_03550 0.26 -0.5 711,859 - zur MCAODC_03550 0.26 -1.0 711,859 - zur MCAODC_03550 0.26 -0.3 711,978 + zur MCAODC_03550 0.49 -1.4 711,978 + zur MCAODC_03550 0.49 -0.4 711,978 + zur MCAODC_03550 0.49 -1.0 711,978 + zur MCAODC_03550 0.49 +0.7 711,978 + zur MCAODC_03550 0.49 +1.8 711,979 - zur MCAODC_03550 0.49 -0.3 711,979 - zur MCAODC_03550 0.49 -0.4 712,014 - zur MCAODC_03550 0.56 +1.8 712,022 + zur MCAODC_03550 0.57 -0.2 712,022 + zur MCAODC_03550 0.57 +0.0 712,022 + zur MCAODC_03550 0.57 +0.6 712,022 + zur MCAODC_03550 0.57 +1.1 712,022 + zur MCAODC_03550 0.57 -0.9 712,023 - zur MCAODC_03550 0.58 +0.5 712,023 - zur MCAODC_03550 0.58 +0.7 712,023 - zur MCAODC_03550 0.58 -0.4 712,023 - zur MCAODC_03550 0.58 -1.3 712,029 - zur MCAODC_03550 0.59 -0.1 712,029 - zur MCAODC_03550 0.59 -0.3 712,091 + zur MCAODC_03550 0.71 -0.0 712,091 + zur MCAODC_03550 0.71 -0.2 712,092 - zur MCAODC_03550 0.71 -2.0 712,127 + zur MCAODC_03550 0.78 -0.8 712,128 - zur MCAODC_03550 0.78 -0.4 712,249 + -0.3 712,249 + +0.7 712,249 + +0.8 712,250 - +0.9 712,250 - -1.9 712,250 - -0.2 712,250 - +0.5 712,250 - -0.7 712,250 - -0.3 712,250 - -0.1 712,250 - -0.2 712,259 + -0.6 712,259 + +0.5 712,260 - +0.1 712,260 - +0.2 712,260 - +0.1 712,281 - -0.3 712,281 - -0.0 712,281 - -0.1 712,284 + +0.3 712,293 + -0.4 712,294 - +1.4 712,353 + yjbJ MCAODC_03555 0.33 +1.0 712,370 - yjbJ MCAODC_03555 0.41 +0.4 712,391 - yjbJ MCAODC_03555 0.51 +1.7 712,391 - yjbJ MCAODC_03555 0.51 -2.3 712,408 + yjbJ MCAODC_03555 0.60 +0.8 712,408 + yjbJ MCAODC_03555 0.60 -0.4 712,409 - yjbJ MCAODC_03555 0.60 -0.2 712,409 - yjbJ MCAODC_03555 0.60 -0.1 712,447 + yjbJ MCAODC_03555 0.78 -1.0 712,493 - +0.0 712,493 - -1.1 712,511 - +0.0 712,511 - +0.4 712,528 - -0.1 712,556 + +0.9 712,556 + +0.4 712,556 + +0.0 712,556 + +0.5 712,556 + +1.7 712,562 + -0.2 712,562 + -0.4 712,563 - +1.1 712,585 + -0.0 712,586 - +0.2 712,603 - +0.6 712,628 + +0.6 712,655 + -0.4 712,655 + +1.6 712,656 - -0.2 712,656 - -0.4 712,696 - +0.3 712,736 + +0.5 712,776 - dinF MCAODC_03560 0.13 +0.5 712,782 - dinF MCAODC_03560 0.13 -0.4 712,809 + dinF MCAODC_03560 0.15 +1.0 712,810 - dinF MCAODC_03560 0.15 -0.1 712,811 + dinF MCAODC_03560 0.15 +0.1 712,811 + dinF MCAODC_03560 0.15 +1.0 712,812 - dinF MCAODC_03560 0.15 +1.1 712,812 - dinF MCAODC_03560 0.15 +1.4 712,812 - dinF MCAODC_03560 0.15 -0.3 712,871 + dinF MCAODC_03560 0.20 -0.9 712,872 - dinF MCAODC_03560 0.20 -0.2 712,872 - dinF MCAODC_03560 0.20 -0.7 712,876 + dinF MCAODC_03560 0.20 -0.2 712,949 - dinF MCAODC_03560 0.26 -0.4 712,966 - dinF MCAODC_03560 0.27 -0.4 712,966 - dinF MCAODC_03560 0.27 +1.1 712,971 + dinF MCAODC_03560 0.27 +1.1 712,972 - dinF MCAODC_03560 0.27 -0.2 713,039 - dinF MCAODC_03560 0.33 +1.3 713,039 - dinF MCAODC_03560 0.33 -1.0 713,039 - dinF MCAODC_03560 0.33 +0.1 713,039 - dinF MCAODC_03560 0.33 -0.6 713,163 + dinF MCAODC_03560 0.42 -0.1 713,165 - dinF MCAODC_03560 0.42 -0.1 713,213 + dinF MCAODC_03560 0.46 +0.3 713,214 - dinF MCAODC_03560 0.46 -2.1 713,222 + dinF MCAODC_03560 0.46 -0.5
Or see this region's nucleotide sequence