Experiment: WM_Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lptG and lptF overlap by 1 nucleotides lptF and pepA are separated by 266 nucleotides
MCAODC_02285: lptG - LPS export ABC transporter permease LptG, at 470,127 to 471,209
lptG
MCAODC_02290: lptF - LPS export ABC transporter permease LptF, at 471,209 to 472,309
lptF
MCAODC_02295: pepA - leucyl aminopeptidase, at 472,576 to 474,087
pepA
Position (kb) 471
472
473 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 472.367 kb on - strand at 472.410 kb on + strand at 472.410 kb on + strand at 472.411 kb on - strand at 472.411 kb on - strand at 472.415 kb on - strand at 472.415 kb on - strand at 472.415 kb on - strand at 472.417 kb on - strand at 472.417 kb on - strand at 472.465 kb on - strand at 472.474 kb on - strand at 472.513 kb on - strand at 472.536 kb on + strand at 472.536 kb on + strand at 472.570 kb on + strand at 472.570 kb on + strand at 472.570 kb on + strand at 472.570 kb on + strand at 472.584 kb on + strand at 472.585 kb on - strand at 472.585 kb on - strand at 472.585 kb on - strand at 472.589 kb on + strand at 472.699 kb on + strand at 472.700 kb on - strand at 472.700 kb on - strand at 472.700 kb on - strand at 472.715 kb on + strand at 472.715 kb on + strand at 472.715 kb on + strand at 472.778 kb on + strand, within pepA at 472.779 kb on - strand, within pepA at 472.840 kb on + strand, within pepA at 472.840 kb on + strand, within pepA at 472.841 kb on - strand, within pepA at 472.870 kb on - strand, within pepA at 472.870 kb on - strand, within pepA at 472.870 kb on - strand, within pepA at 472.870 kb on - strand, within pepA at 472.988 kb on - strand, within pepA at 473.040 kb on + strand, within pepA at 473.040 kb on + strand, within pepA at 473.152 kb on - strand, within pepA at 473.163 kb on + strand, within pepA at 473.215 kb on + strand, within pepA at 473.215 kb on + strand, within pepA at 473.216 kb on - strand, within pepA at 473.229 kb on + strand, within pepA at 473.230 kb on - strand, within pepA at 473.281 kb on + strand, within pepA at 473.281 kb on + strand, within pepA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas14 remove 472,367 - +1.1 472,410 + -2.2 472,410 + -2.4 472,411 - -1.0 472,411 - +0.7 472,415 - +1.0 472,415 - -0.8 472,415 - +0.5 472,417 - -0.1 472,417 - -1.1 472,465 - -1.0 472,474 - -0.7 472,513 - -0.8 472,536 + +0.4 472,536 + -0.2 472,570 + +0.2 472,570 + +0.5 472,570 + -0.8 472,570 + -1.0 472,584 + +0.0 472,585 - -1.2 472,585 - -1.5 472,585 - -0.7 472,589 + -0.6 472,699 + -0.5 472,700 - -2.2 472,700 - +0.4 472,700 - -1.7 472,715 + -0.1 472,715 + -0.3 472,715 + -1.6 472,778 + pepA MCAODC_02295 0.13 -1.8 472,779 - pepA MCAODC_02295 0.13 +0.2 472,840 + pepA MCAODC_02295 0.17 -0.8 472,840 + pepA MCAODC_02295 0.17 -3.0 472,841 - pepA MCAODC_02295 0.18 +0.8 472,870 - pepA MCAODC_02295 0.19 +0.3 472,870 - pepA MCAODC_02295 0.19 -0.6 472,870 - pepA MCAODC_02295 0.19 -1.3 472,870 - pepA MCAODC_02295 0.19 -1.9 472,988 - pepA MCAODC_02295 0.27 +1.5 473,040 + pepA MCAODC_02295 0.31 -0.0 473,040 + pepA MCAODC_02295 0.31 -2.0 473,152 - pepA MCAODC_02295 0.38 -0.3 473,163 + pepA MCAODC_02295 0.39 +0.1 473,215 + pepA MCAODC_02295 0.42 +0.1 473,215 + pepA MCAODC_02295 0.42 -0.9 473,216 - pepA MCAODC_02295 0.42 -2.3 473,229 + pepA MCAODC_02295 0.43 +0.5 473,230 - pepA MCAODC_02295 0.43 -1.9 473,281 + pepA MCAODC_02295 0.47 +0.4 473,281 + pepA MCAODC_02295 0.47 +0.2
Or see this region's nucleotide sequence