Experiment: WM_Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tsr and MCAODC_01895 are separated by 228 nucleotides MCAODC_01895 and btsT are separated by 292 nucleotides
MCAODC_01890: tsr - methyl-accepting chemotaxis protein, at 363,970 to 365,634
tsr
MCAODC_01895: MCAODC_01895 - hypothetical protein, at 365,863 to 366,405
_01895
MCAODC_01900: btsT - pyruvate/proton symporter BtsT, at 366,698 to 368,848
btsT
Position (kb) 365
366
367 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 364.941 kb on + strand, within tsr at 364.992 kb on + strand, within tsr at 364.992 kb on + strand, within tsr at 365.069 kb on + strand, within tsr at 365.069 kb on + strand, within tsr at 365.070 kb on - strand, within tsr at 365.070 kb on - strand, within tsr at 365.070 kb on - strand, within tsr at 365.102 kb on + strand, within tsr at 365.103 kb on - strand, within tsr at 365.103 kb on - strand, within tsr at 365.103 kb on - strand, within tsr at 365.126 kb on + strand, within tsr at 365.126 kb on + strand, within tsr at 365.126 kb on + strand, within tsr at 365.126 kb on + strand, within tsr at 365.126 kb on + strand, within tsr at 365.127 kb on - strand, within tsr at 365.127 kb on - strand, within tsr at 365.127 kb on - strand, within tsr at 365.135 kb on + strand, within tsr at 365.135 kb on + strand, within tsr at 365.135 kb on + strand, within tsr at 365.135 kb on + strand, within tsr at 365.136 kb on - strand, within tsr at 365.136 kb on - strand, within tsr at 365.136 kb on - strand, within tsr at 365.136 kb on - strand, within tsr at 365.136 kb on - strand, within tsr at 365.136 kb on - strand, within tsr at 365.160 kb on - strand, within tsr at 365.206 kb on + strand, within tsr at 365.206 kb on + strand, within tsr at 365.207 kb on - strand, within tsr at 365.207 kb on - strand, within tsr at 365.249 kb on + strand, within tsr at 365.249 kb on + strand, within tsr at 365.249 kb on + strand, within tsr at 365.250 kb on - strand, within tsr at 365.250 kb on - strand, within tsr at 365.250 kb on - strand, within tsr at 365.394 kb on + strand, within tsr at 365.395 kb on - strand, within tsr at 365.397 kb on + strand, within tsr at 365.414 kb on + strand, within tsr at 365.414 kb on + strand, within tsr at 365.506 kb on + strand at 365.507 kb on - strand at 365.507 kb on - strand at 365.544 kb on + strand at 365.572 kb on + strand at 365.572 kb on + strand at 365.602 kb on + strand at 365.603 kb on - strand at 365.623 kb on - strand at 365.623 kb on - strand at 365.692 kb on + strand at 365.764 kb on + strand at 365.765 kb on - strand at 365.926 kb on - strand, within MCAODC_01895 at 365.947 kb on - strand, within MCAODC_01895 at 366.003 kb on + strand, within MCAODC_01895 at 366.004 kb on - strand, within MCAODC_01895 at 366.004 kb on - strand, within MCAODC_01895 at 366.057 kb on + strand, within MCAODC_01895 at 366.058 kb on - strand, within MCAODC_01895 at 366.101 kb on + strand, within MCAODC_01895 at 366.104 kb on + strand, within MCAODC_01895 at 366.105 kb on - strand, within MCAODC_01895 at 366.130 kb on - strand, within MCAODC_01895 at 366.363 kb on + strand at 366.439 kb on + strand at 366.487 kb on - strand at 366.500 kb on - strand at 366.540 kb on + strand at 366.541 kb on - strand at 366.553 kb on + strand at 366.566 kb on - strand at 366.569 kb on + strand at 366.569 kb on + strand at 366.574 kb on + strand at 366.590 kb on - strand at 366.626 kb on + strand at 366.627 kb on - strand at 366.627 kb on - strand at 366.652 kb on - strand at 366.670 kb on + strand at 366.670 kb on + strand at 366.670 kb on + strand at 366.671 kb on - strand at 366.674 kb on - strand at 366.681 kb on - strand at 366.681 kb on - strand at 366.681 kb on - strand at 366.694 kb on + strand at 366.695 kb on - strand at 366.697 kb on + strand at 366.714 kb on + strand at 366.726 kb on + strand at 366.726 kb on + strand at 366.726 kb on + strand at 366.781 kb on - strand at 366.836 kb on + strand at 366.837 kb on - strand at 366.837 kb on - strand at 366.837 kb on - strand at 366.837 kb on - strand at 366.855 kb on - strand at 366.857 kb on + strand at 366.857 kb on + strand at 366.857 kb on + strand at 366.858 kb on - strand at 366.858 kb on - strand at 366.858 kb on - strand at 366.858 kb on - strand at 366.858 kb on - strand at 366.858 kb on - strand at 366.858 kb on - strand at 366.866 kb on + strand at 366.867 kb on - strand at 366.922 kb on + strand, within btsT at 366.941 kb on + strand, within btsT at 366.941 kb on + strand, within btsT at 366.941 kb on + strand, within btsT at 366.942 kb on - strand, within btsT at 366.942 kb on - strand, within btsT at 366.942 kb on - strand, within btsT at 366.942 kb on - strand, within btsT at 366.959 kb on + strand, within btsT at 367.075 kb on - strand, within btsT at 367.102 kb on + strand, within btsT at 367.114 kb on + strand, within btsT at 367.114 kb on + strand, within btsT at 367.115 kb on - strand, within btsT at 367.210 kb on - strand, within btsT at 367.303 kb on - strand, within btsT at 367.318 kb on + strand, within btsT at 367.319 kb on - strand, within btsT at 367.319 kb on - strand, within btsT at 367.328 kb on + strand, within btsT at 367.328 kb on + strand, within btsT at 367.328 kb on + strand, within btsT at 367.328 kb on + strand, within btsT at 367.328 kb on + strand, within btsT at 367.328 kb on + strand, within btsT at 367.328 kb on + strand, within btsT at 367.328 kb on + strand, within btsT at 367.328 kb on + strand, within btsT at 367.329 kb on - strand, within btsT at 367.329 kb on - strand, within btsT at 367.329 kb on - strand, within btsT at 367.329 kb on - strand, within btsT at 367.329 kb on - strand, within btsT at 367.329 kb on - strand, within btsT at 367.329 kb on - strand, within btsT at 367.329 kb on - strand, within btsT at 367.329 kb on - strand, within btsT at 367.329 kb on - strand, within btsT at 367.329 kb on - strand, within btsT at 367.329 kb on - strand, within btsT at 367.329 kb on - strand, within btsT at 367.329 kb on - strand, within btsT at 367.340 kb on - strand, within btsT at 367.373 kb on - strand, within btsT at 367.373 kb on - strand, within btsT at 367.373 kb on - strand, within btsT at 367.399 kb on + strand, within btsT at 367.404 kb on - strand, within btsT
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas14 remove 364,941 + tsr MCAODC_01890 0.58 -0.5 364,992 + tsr MCAODC_01890 0.61 +0.4 364,992 + tsr MCAODC_01890 0.61 +0.8 365,069 + tsr MCAODC_01890 0.66 +0.2 365,069 + tsr MCAODC_01890 0.66 +0.5 365,070 - tsr MCAODC_01890 0.66 -0.4 365,070 - tsr MCAODC_01890 0.66 +0.8 365,070 - tsr MCAODC_01890 0.66 +0.5 365,102 + tsr MCAODC_01890 0.68 +0.5 365,103 - tsr MCAODC_01890 0.68 +0.3 365,103 - tsr MCAODC_01890 0.68 +0.3 365,103 - tsr MCAODC_01890 0.68 -0.6 365,126 + tsr MCAODC_01890 0.69 +0.3 365,126 + tsr MCAODC_01890 0.69 -0.8 365,126 + tsr MCAODC_01890 0.69 -3.1 365,126 + tsr MCAODC_01890 0.69 -0.7 365,126 + tsr MCAODC_01890 0.69 +4.1 365,127 - tsr MCAODC_01890 0.69 +0.1 365,127 - tsr MCAODC_01890 0.69 +0.1 365,127 - tsr MCAODC_01890 0.69 +0.8 365,135 + tsr MCAODC_01890 0.70 -0.1 365,135 + tsr MCAODC_01890 0.70 +0.4 365,135 + tsr MCAODC_01890 0.70 +0.1 365,135 + tsr MCAODC_01890 0.70 +0.7 365,136 - tsr MCAODC_01890 0.70 +1.8 365,136 - tsr MCAODC_01890 0.70 -0.3 365,136 - tsr MCAODC_01890 0.70 -1.2 365,136 - tsr MCAODC_01890 0.70 -2.1 365,136 - tsr MCAODC_01890 0.70 +1.3 365,136 - tsr MCAODC_01890 0.70 -0.2 365,160 - tsr MCAODC_01890 0.71 -0.3 365,206 + tsr MCAODC_01890 0.74 +0.2 365,206 + tsr MCAODC_01890 0.74 +0.2 365,207 - tsr MCAODC_01890 0.74 +0.1 365,207 - tsr MCAODC_01890 0.74 +0.5 365,249 + tsr MCAODC_01890 0.77 +0.6 365,249 + tsr MCAODC_01890 0.77 +0.7 365,249 + tsr MCAODC_01890 0.77 +0.7 365,250 - tsr MCAODC_01890 0.77 +0.5 365,250 - tsr MCAODC_01890 0.77 +0.1 365,250 - tsr MCAODC_01890 0.77 +0.4 365,394 + tsr MCAODC_01890 0.86 -0.8 365,395 - tsr MCAODC_01890 0.86 +0.9 365,397 + tsr MCAODC_01890 0.86 +0.1 365,414 + tsr MCAODC_01890 0.87 +0.9 365,414 + tsr MCAODC_01890 0.87 +0.8 365,506 + +1.1 365,507 - -0.6 365,507 - +0.1 365,544 + +1.0 365,572 + -0.3 365,572 + +0.2 365,602 + -0.9 365,603 - +0.4 365,623 - +0.5 365,623 - -2.8 365,692 + +0.7 365,764 + +0.1 365,765 - +0.7 365,926 - MCAODC_01895 0.12 +0.2 365,947 - MCAODC_01895 0.15 -0.1 366,003 + MCAODC_01895 0.26 +1.6 366,004 - MCAODC_01895 0.26 -2.5 366,004 - MCAODC_01895 0.26 +0.7 366,057 + MCAODC_01895 0.36 -0.1 366,058 - MCAODC_01895 0.36 +0.1 366,101 + MCAODC_01895 0.44 +0.1 366,104 + MCAODC_01895 0.44 -0.2 366,105 - MCAODC_01895 0.45 -0.4 366,130 - MCAODC_01895 0.49 +0.6 366,363 + +1.7 366,439 + +1.5 366,487 - +0.2 366,500 - -0.9 366,540 + -1.3 366,541 - -0.2 366,553 + +1.5 366,566 - -1.5 366,569 + -1.4 366,569 + +0.5 366,574 + -0.1 366,590 - -0.4 366,626 + +0.4 366,627 - +0.1 366,627 - -3.1 366,652 - +0.0 366,670 + +0.3 366,670 + -0.3 366,670 + +0.2 366,671 - -1.4 366,674 - -0.3 366,681 - +0.0 366,681 - +0.1 366,681 - -1.5 366,694 + -1.5 366,695 - +0.1 366,697 + +0.8 366,714 + -0.3 366,726 + -0.1 366,726 + +0.4 366,726 + -2.6 366,781 - +0.6 366,836 + -0.1 366,837 - -1.8 366,837 - +1.9 366,837 - -0.1 366,837 - +0.7 366,855 - -0.7 366,857 + +0.5 366,857 + +0.6 366,857 + -0.2 366,858 - +0.1 366,858 - -0.0 366,858 - -0.2 366,858 - -0.6 366,858 - -1.0 366,858 - -0.2 366,858 - -0.6 366,866 + +1.1 366,867 - +2.6 366,922 + btsT MCAODC_01900 0.10 +0.7 366,941 + btsT MCAODC_01900 0.11 +0.7 366,941 + btsT MCAODC_01900 0.11 -0.7 366,941 + btsT MCAODC_01900 0.11 -0.2 366,942 - btsT MCAODC_01900 0.11 +0.1 366,942 - btsT MCAODC_01900 0.11 -0.8 366,942 - btsT MCAODC_01900 0.11 -0.7 366,942 - btsT MCAODC_01900 0.11 +0.0 366,959 + btsT MCAODC_01900 0.12 -1.3 367,075 - btsT MCAODC_01900 0.18 +0.4 367,102 + btsT MCAODC_01900 0.19 +0.6 367,114 + btsT MCAODC_01900 0.19 +0.7 367,114 + btsT MCAODC_01900 0.19 +0.1 367,115 - btsT MCAODC_01900 0.19 -0.1 367,210 - btsT MCAODC_01900 0.24 -0.5 367,303 - btsT MCAODC_01900 0.28 -0.1 367,318 + btsT MCAODC_01900 0.29 -0.5 367,319 - btsT MCAODC_01900 0.29 -0.5 367,319 - btsT MCAODC_01900 0.29 +0.5 367,328 + btsT MCAODC_01900 0.29 +0.4 367,328 + btsT MCAODC_01900 0.29 +0.5 367,328 + btsT MCAODC_01900 0.29 +0.0 367,328 + btsT MCAODC_01900 0.29 +0.9 367,328 + btsT MCAODC_01900 0.29 +0.4 367,328 + btsT MCAODC_01900 0.29 +0.9 367,328 + btsT MCAODC_01900 0.29 +0.8 367,328 + btsT MCAODC_01900 0.29 -0.6 367,328 + btsT MCAODC_01900 0.29 +0.2 367,329 - btsT MCAODC_01900 0.29 -1.3 367,329 - btsT MCAODC_01900 0.29 +1.0 367,329 - btsT MCAODC_01900 0.29 +0.2 367,329 - btsT MCAODC_01900 0.29 -0.0 367,329 - btsT MCAODC_01900 0.29 +0.2 367,329 - btsT MCAODC_01900 0.29 +0.9 367,329 - btsT MCAODC_01900 0.29 -2.1 367,329 - btsT MCAODC_01900 0.29 -0.3 367,329 - btsT MCAODC_01900 0.29 +0.6 367,329 - btsT MCAODC_01900 0.29 +0.6 367,329 - btsT MCAODC_01900 0.29 -1.3 367,329 - btsT MCAODC_01900 0.29 +0.0 367,329 - btsT MCAODC_01900 0.29 +0.0 367,329 - btsT MCAODC_01900 0.29 +0.5 367,340 - btsT MCAODC_01900 0.30 +0.0 367,373 - btsT MCAODC_01900 0.31 +0.6 367,373 - btsT MCAODC_01900 0.31 -2.8 367,373 - btsT MCAODC_01900 0.31 +0.9 367,399 + btsT MCAODC_01900 0.33 +0.3 367,404 - btsT MCAODC_01900 0.33 -1.0
Or see this region's nucleotide sequence