Experiment: WM_Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dnaC and yjjA are separated by 48 nucleotides yjjA and opgB are separated by 253 nucleotides opgB and lgoD are separated by 136 nucleotides
MCAODC_01860: dnaC - DNA replication protein DnaC, at 356,308 to 357,045
dnaC
MCAODC_01865: yjjA - Uncharacterized protein YjjA, at 357,094 to 357,588
yjjA
MCAODC_01870: opgB - phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase, at 357,842 to 360,133
opgB
MCAODC_01875: lgoD - L-galactonate oxidoreductase, at 360,270 to 361,292
lgoD
Position (kb) 357
358
359
360
361 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 357.026 kb on + strand at 357.026 kb on + strand at 357.040 kb on + strand at 357.043 kb on + strand at 357.044 kb on - strand at 357.044 kb on - strand at 357.044 kb on - strand at 357.063 kb on - strand at 357.065 kb on - strand at 357.089 kb on + strand at 357.109 kb on - strand at 357.260 kb on + strand, within yjjA at 357.260 kb on + strand, within yjjA at 357.260 kb on + strand, within yjjA at 357.260 kb on + strand, within yjjA at 357.260 kb on + strand, within yjjA at 357.261 kb on - strand, within yjjA at 357.264 kb on + strand, within yjjA at 357.264 kb on + strand, within yjjA at 357.264 kb on + strand, within yjjA at 357.265 kb on - strand, within yjjA at 357.265 kb on - strand, within yjjA at 357.273 kb on + strand, within yjjA at 357.273 kb on + strand, within yjjA at 357.293 kb on + strand, within yjjA at 357.293 kb on + strand, within yjjA at 357.303 kb on + strand, within yjjA at 357.303 kb on + strand, within yjjA at 357.303 kb on + strand, within yjjA at 357.304 kb on - strand, within yjjA at 357.304 kb on - strand, within yjjA at 357.304 kb on - strand, within yjjA at 357.676 kb on + strand at 357.677 kb on - strand at 357.718 kb on + strand at 357.719 kb on - strand at 357.778 kb on + strand at 357.778 kb on + strand at 357.778 kb on + strand at 357.778 kb on + strand at 357.778 kb on + strand at 357.779 kb on - strand at 357.779 kb on - strand at 357.826 kb on + strand at 357.853 kb on - strand at 357.853 kb on - strand at 357.890 kb on + strand at 357.891 kb on - strand at 357.910 kb on + strand at 357.910 kb on + strand at 357.910 kb on + strand at 357.911 kb on - strand at 357.911 kb on - strand at 357.911 kb on - strand at 357.936 kb on + strand at 357.937 kb on - strand at 357.951 kb on + strand at 357.952 kb on - strand at 357.952 kb on - strand at 357.963 kb on + strand at 357.964 kb on - strand at 357.967 kb on + strand at 358.025 kb on + strand at 358.025 kb on + strand at 358.025 kb on + strand at 358.027 kb on + strand at 358.027 kb on + strand at 358.027 kb on + strand at 358.028 kb on - strand at 358.032 kb on + strand at 358.033 kb on - strand at 358.286 kb on + strand, within opgB at 358.287 kb on - strand, within opgB at 358.289 kb on + strand, within opgB at 358.289 kb on + strand, within opgB at 358.289 kb on + strand, within opgB at 358.289 kb on + strand, within opgB at 358.290 kb on - strand, within opgB at 358.290 kb on - strand, within opgB at 358.290 kb on - strand, within opgB at 358.290 kb on - strand, within opgB at 358.290 kb on - strand, within opgB at 358.310 kb on - strand, within opgB at 358.337 kb on + strand, within opgB at 358.338 kb on - strand, within opgB at 358.338 kb on - strand, within opgB at 358.338 kb on - strand, within opgB at 358.338 kb on - strand, within opgB at 358.338 kb on - strand, within opgB at 358.338 kb on - strand, within opgB at 358.339 kb on + strand, within opgB at 358.339 kb on + strand, within opgB at 358.339 kb on + strand, within opgB at 358.340 kb on - strand, within opgB at 358.340 kb on - strand, within opgB at 358.340 kb on - strand, within opgB at 358.343 kb on + strand, within opgB at 358.344 kb on - strand, within opgB at 358.368 kb on - strand, within opgB at 358.469 kb on + strand, within opgB at 358.469 kb on + strand, within opgB at 358.470 kb on - strand, within opgB at 358.604 kb on + strand, within opgB at 358.614 kb on - strand, within opgB at 358.648 kb on + strand, within opgB at 358.686 kb on + strand, within opgB at 358.686 kb on + strand, within opgB at 358.687 kb on - strand, within opgB at 358.687 kb on - strand, within opgB at 358.687 kb on - strand, within opgB at 358.687 kb on - strand, within opgB at 358.687 kb on - strand, within opgB at 358.688 kb on + strand, within opgB at 358.688 kb on + strand, within opgB at 358.689 kb on - strand, within opgB at 358.689 kb on - strand, within opgB at 358.689 kb on - strand, within opgB at 358.759 kb on + strand, within opgB at 358.864 kb on + strand, within opgB at 358.864 kb on + strand, within opgB at 358.963 kb on + strand, within opgB at 358.999 kb on + strand, within opgB at 359.062 kb on + strand, within opgB at 359.062 kb on + strand, within opgB at 359.137 kb on + strand, within opgB at 359.138 kb on - strand, within opgB at 359.186 kb on - strand, within opgB at 359.206 kb on + strand, within opgB at 359.206 kb on + strand, within opgB at 359.248 kb on + strand, within opgB at 359.249 kb on - strand, within opgB at 359.504 kb on + strand, within opgB at 359.504 kb on + strand, within opgB at 359.504 kb on + strand, within opgB at 359.504 kb on + strand, within opgB at 359.505 kb on - strand, within opgB at 359.635 kb on + strand, within opgB at 359.636 kb on - strand, within opgB at 359.641 kb on + strand, within opgB at 359.642 kb on - strand, within opgB at 359.642 kb on - strand, within opgB at 359.704 kb on + strand, within opgB at 359.734 kb on + strand, within opgB at 359.735 kb on - strand, within opgB at 359.832 kb on + strand, within opgB at 359.902 kb on + strand, within opgB at 360.022 kb on - strand at 360.061 kb on + strand at 360.110 kb on - strand at 360.118 kb on - strand at 360.118 kb on - strand at 360.131 kb on + strand at 360.149 kb on + strand at 360.149 kb on + strand at 360.150 kb on - strand at 360.150 kb on - strand at 360.170 kb on + strand at 360.170 kb on + strand at 360.170 kb on + strand at 360.170 kb on + strand at 360.188 kb on + strand at 360.188 kb on + strand at 360.198 kb on + strand at 360.201 kb on + strand at 360.201 kb on + strand at 360.202 kb on - strand at 360.202 kb on - strand at 360.255 kb on + strand at 360.255 kb on + strand at 360.256 kb on - strand at 360.258 kb on + strand at 360.259 kb on - strand at 360.278 kb on + strand at 360.278 kb on + strand at 360.278 kb on + strand at 360.279 kb on - strand at 360.282 kb on + strand at 360.283 kb on - strand at 360.294 kb on + strand at 360.326 kb on - strand at 360.468 kb on - strand, within lgoD at 360.519 kb on + strand, within lgoD at 360.520 kb on - strand, within lgoD at 360.520 kb on - strand, within lgoD at 360.520 kb on - strand, within lgoD at 360.558 kb on - strand, within lgoD at 360.575 kb on + strand, within lgoD at 360.576 kb on - strand, within lgoD at 360.925 kb on + strand, within lgoD at 360.932 kb on + strand, within lgoD at 360.933 kb on - strand, within lgoD at 361.027 kb on + strand, within lgoD at 361.027 kb on + strand, within lgoD at 361.102 kb on - strand, within lgoD at 361.102 kb on - strand, within lgoD at 361.126 kb on + strand, within lgoD
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas14 remove 357,026 + -1.3 357,026 + +0.7 357,040 + -0.8 357,043 + +0.7 357,044 - -0.8 357,044 - -0.5 357,044 - +0.5 357,063 - -0.2 357,065 - -2.0 357,089 + +0.4 357,109 - -1.4 357,260 + yjjA MCAODC_01865 0.34 -0.1 357,260 + yjjA MCAODC_01865 0.34 -3.3 357,260 + yjjA MCAODC_01865 0.34 -0.6 357,260 + yjjA MCAODC_01865 0.34 +1.2 357,260 + yjjA MCAODC_01865 0.34 -1.8 357,261 - yjjA MCAODC_01865 0.34 +0.5 357,264 + yjjA MCAODC_01865 0.34 +0.4 357,264 + yjjA MCAODC_01865 0.34 +0.3 357,264 + yjjA MCAODC_01865 0.34 -0.4 357,265 - yjjA MCAODC_01865 0.35 +0.1 357,265 - yjjA MCAODC_01865 0.35 -0.5 357,273 + yjjA MCAODC_01865 0.36 +0.1 357,273 + yjjA MCAODC_01865 0.36 -0.3 357,293 + yjjA MCAODC_01865 0.40 +0.0 357,293 + yjjA MCAODC_01865 0.40 +0.6 357,303 + yjjA MCAODC_01865 0.42 +0.6 357,303 + yjjA MCAODC_01865 0.42 +0.3 357,303 + yjjA MCAODC_01865 0.42 +1.6 357,304 - yjjA MCAODC_01865 0.42 +0.4 357,304 - yjjA MCAODC_01865 0.42 -0.0 357,304 - yjjA MCAODC_01865 0.42 -1.6 357,676 + +0.2 357,677 - +0.4 357,718 + -0.5 357,719 - -1.0 357,778 + -0.8 357,778 + +1.0 357,778 + -0.4 357,778 + +0.7 357,778 + +0.2 357,779 - +0.2 357,779 - +0.1 357,826 + -0.1 357,853 - +0.1 357,853 - -1.5 357,890 + +0.7 357,891 - +1.4 357,910 + -0.4 357,910 + +0.8 357,910 + +1.3 357,911 - +0.3 357,911 - +0.5 357,911 - +0.4 357,936 + -0.2 357,937 - -0.3 357,951 + +0.7 357,952 - +0.7 357,952 - -0.6 357,963 + -1.5 357,964 - -0.0 357,967 + -1.7 358,025 + +0.4 358,025 + +0.7 358,025 + +0.5 358,027 + -0.0 358,027 + +0.2 358,027 + -1.3 358,028 - +0.4 358,032 + +0.2 358,033 - +1.5 358,286 + opgB MCAODC_01870 0.19 -0.1 358,287 - opgB MCAODC_01870 0.19 -0.4 358,289 + opgB MCAODC_01870 0.20 +0.5 358,289 + opgB MCAODC_01870 0.20 -1.4 358,289 + opgB MCAODC_01870 0.20 -0.2 358,289 + opgB MCAODC_01870 0.20 -0.0 358,290 - opgB MCAODC_01870 0.20 +0.5 358,290 - opgB MCAODC_01870 0.20 +0.2 358,290 - opgB MCAODC_01870 0.20 +0.5 358,290 - opgB MCAODC_01870 0.20 +0.2 358,290 - opgB MCAODC_01870 0.20 -1.0 358,310 - opgB MCAODC_01870 0.20 +0.2 358,337 + opgB MCAODC_01870 0.22 +1.2 358,338 - opgB MCAODC_01870 0.22 -0.8 358,338 - opgB MCAODC_01870 0.22 -0.6 358,338 - opgB MCAODC_01870 0.22 +0.2 358,338 - opgB MCAODC_01870 0.22 +0.7 358,338 - opgB MCAODC_01870 0.22 +0.4 358,338 - opgB MCAODC_01870 0.22 -0.1 358,339 + opgB MCAODC_01870 0.22 +1.0 358,339 + opgB MCAODC_01870 0.22 +0.6 358,339 + opgB MCAODC_01870 0.22 +0.2 358,340 - opgB MCAODC_01870 0.22 -0.7 358,340 - opgB MCAODC_01870 0.22 -0.0 358,340 - opgB MCAODC_01870 0.22 -1.9 358,343 + opgB MCAODC_01870 0.22 -1.4 358,344 - opgB MCAODC_01870 0.22 +0.5 358,368 - opgB MCAODC_01870 0.23 -0.9 358,469 + opgB MCAODC_01870 0.27 -0.4 358,469 + opgB MCAODC_01870 0.27 +0.8 358,470 - opgB MCAODC_01870 0.27 +0.5 358,604 + opgB MCAODC_01870 0.33 -0.7 358,614 - opgB MCAODC_01870 0.34 +0.5 358,648 + opgB MCAODC_01870 0.35 +0.1 358,686 + opgB MCAODC_01870 0.37 +0.5 358,686 + opgB MCAODC_01870 0.37 +0.6 358,687 - opgB MCAODC_01870 0.37 -0.9 358,687 - opgB MCAODC_01870 0.37 +0.3 358,687 - opgB MCAODC_01870 0.37 +1.4 358,687 - opgB MCAODC_01870 0.37 +0.0 358,687 - opgB MCAODC_01870 0.37 +1.2 358,688 + opgB MCAODC_01870 0.37 +0.0 358,688 + opgB MCAODC_01870 0.37 +0.4 358,689 - opgB MCAODC_01870 0.37 +0.1 358,689 - opgB MCAODC_01870 0.37 +0.1 358,689 - opgB MCAODC_01870 0.37 +1.7 358,759 + opgB MCAODC_01870 0.40 +1.1 358,864 + opgB MCAODC_01870 0.45 -0.4 358,864 + opgB MCAODC_01870 0.45 +1.0 358,963 + opgB MCAODC_01870 0.49 -0.2 358,999 + opgB MCAODC_01870 0.50 +0.7 359,062 + opgB MCAODC_01870 0.53 +1.1 359,062 + opgB MCAODC_01870 0.53 -0.6 359,137 + opgB MCAODC_01870 0.57 +0.1 359,138 - opgB MCAODC_01870 0.57 -0.7 359,186 - opgB MCAODC_01870 0.59 +0.1 359,206 + opgB MCAODC_01870 0.60 +0.4 359,206 + opgB MCAODC_01870 0.60 +1.3 359,248 + opgB MCAODC_01870 0.61 +2.2 359,249 - opgB MCAODC_01870 0.61 +0.6 359,504 + opgB MCAODC_01870 0.73 +0.9 359,504 + opgB MCAODC_01870 0.73 -0.0 359,504 + opgB MCAODC_01870 0.73 -1.8 359,504 + opgB MCAODC_01870 0.73 -0.2 359,505 - opgB MCAODC_01870 0.73 -0.4 359,635 + opgB MCAODC_01870 0.78 -0.1 359,636 - opgB MCAODC_01870 0.78 -0.0 359,641 + opgB MCAODC_01870 0.78 +1.4 359,642 - opgB MCAODC_01870 0.79 +0.3 359,642 - opgB MCAODC_01870 0.79 +0.1 359,704 + opgB MCAODC_01870 0.81 +0.5 359,734 + opgB MCAODC_01870 0.83 -0.0 359,735 - opgB MCAODC_01870 0.83 +0.3 359,832 + opgB MCAODC_01870 0.87 +1.0 359,902 + opgB MCAODC_01870 0.90 +0.2 360,022 - +0.6 360,061 + +0.4 360,110 - +0.5 360,118 - -0.2 360,118 - -0.0 360,131 + -0.9 360,149 + +2.1 360,149 + -0.1 360,150 - -1.6 360,150 - -0.4 360,170 + -0.0 360,170 + +0.5 360,170 + -1.2 360,170 + +0.8 360,188 + +0.4 360,188 + -0.9 360,198 + +0.0 360,201 + +1.6 360,201 + -0.7 360,202 - +0.2 360,202 - +0.2 360,255 + +1.4 360,255 + +0.7 360,256 - -0.2 360,258 + -0.4 360,259 - +0.0 360,278 + +0.3 360,278 + +1.9 360,278 + -2.0 360,279 - +0.2 360,282 + -0.2 360,283 - -1.6 360,294 + +0.4 360,326 - -0.1 360,468 - lgoD MCAODC_01875 0.19 +0.1 360,519 + lgoD MCAODC_01875 0.24 -0.3 360,520 - lgoD MCAODC_01875 0.24 +0.4 360,520 - lgoD MCAODC_01875 0.24 +0.4 360,520 - lgoD MCAODC_01875 0.24 +0.4 360,558 - lgoD MCAODC_01875 0.28 -0.6 360,575 + lgoD MCAODC_01875 0.30 -0.2 360,576 - lgoD MCAODC_01875 0.30 -0.3 360,925 + lgoD MCAODC_01875 0.64 -0.7 360,932 + lgoD MCAODC_01875 0.65 -0.8 360,933 - lgoD MCAODC_01875 0.65 +0.7 361,027 + lgoD MCAODC_01875 0.74 +1.1 361,027 + lgoD MCAODC_01875 0.74 -3.1 361,102 - lgoD MCAODC_01875 0.81 -0.6 361,102 - lgoD MCAODC_01875 0.81 +0.0 361,126 + lgoD MCAODC_01875 0.84 -2.3
Or see this region's nucleotide sequence