Strain Fitness in Escherichia coli ECRC101 around MCAODC_01245

Experiment: WM_Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntleuC1 and leuD are separated by 10 nucleotidesleuD and sgrR are separated by 327 nucleotides MCAODC_01240: leuC1 - 3-isopropylmalate dehydratase large subunit 1, at 231,739 to 233,139 leuC1 MCAODC_01245: leuD - 3-isopropylmalate dehydratase small subunit, at 233,150 to 233,755 leuD MCAODC_01255: sgrR - DNA-binding transcriptional regulator SgrR, at 234,083 to 235,741 sgrR Position (kb) 233 234Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 232.193 kb on + strand, within leuC1at 232.193 kb on + strand, within leuC1at 232.194 kb on - strand, within leuC1at 232.285 kb on - strand, within leuC1at 232.299 kb on + strand, within leuC1at 232.370 kb on + strand, within leuC1at 232.371 kb on - strand, within leuC1at 232.402 kb on - strand, within leuC1at 232.402 kb on - strand, within leuC1at 232.458 kb on + strand, within leuC1at 232.458 kb on + strand, within leuC1at 232.458 kb on + strand, within leuC1at 232.458 kb on + strand, within leuC1at 232.458 kb on + strand, within leuC1at 232.458 kb on + strand, within leuC1at 232.458 kb on + strand, within leuC1at 232.458 kb on + strand, within leuC1at 232.458 kb on + strand, within leuC1at 232.458 kb on + strand, within leuC1at 232.458 kb on + strand, within leuC1at 232.459 kb on - strand, within leuC1at 232.459 kb on - strand, within leuC1at 232.462 kb on + strand, within leuC1at 232.614 kb on + strand, within leuC1at 232.647 kb on + strand, within leuC1at 232.711 kb on + strand, within leuC1at 232.711 kb on + strand, within leuC1at 232.711 kb on + strand, within leuC1at 232.711 kb on + strand, within leuC1at 232.711 kb on + strand, within leuC1at 232.712 kb on - strand, within leuC1at 232.712 kb on - strand, within leuC1at 232.713 kb on + strand, within leuC1at 232.713 kb on + strand, within leuC1at 232.714 kb on - strand, within leuC1at 232.792 kb on - strand, within leuC1at 232.792 kb on - strand, within leuC1at 232.792 kb on - strand, within leuC1at 232.851 kb on - strand, within leuC1at 232.915 kb on - strand, within leuC1at 233.029 kb on - strandat 233.133 kb on + strandat 233.133 kb on + strandat 233.134 kb on - strandat 233.137 kb on + strandat 233.137 kb on + strandat 233.138 kb on - strandat 233.351 kb on + strand, within leuDat 233.443 kb on + strand, within leuDat 233.443 kb on + strand, within leuDat 233.443 kb on + strand, within leuDat 233.481 kb on - strand, within leuDat 233.488 kb on + strand, within leuDat 233.488 kb on + strand, within leuDat 233.489 kb on - strand, within leuDat 233.489 kb on - strand, within leuDat 233.521 kb on - strand, within leuDat 233.586 kb on + strand, within leuDat 233.587 kb on - strand, within leuDat 233.628 kb on - strand, within leuDat 233.692 kb on + strand, within leuDat 233.693 kb on - strand, within leuDat 233.747 kb on - strandat 233.747 kb on - strandat 233.753 kb on + strandat 233.754 kb on - strandat 233.760 kb on + strandat 233.805 kb on + strandat 233.805 kb on + strandat 233.806 kb on - strandat 233.828 kb on - strandat 233.836 kb on + strandat 233.836 kb on + strandat 233.837 kb on - strandat 233.914 kb on + strandat 233.972 kb on + strandat 233.972 kb on + strandat 233.973 kb on - strandat 233.973 kb on - strandat 234.019 kb on - strandat 234.019 kb on - strandat 234.025 kb on + strandat 234.033 kb on + strandat 234.033 kb on + strandat 234.034 kb on - strandat 234.036 kb on + strandat 234.036 kb on + strandat 234.039 kb on - strandat 234.039 kb on - strandat 234.139 kb on + strandat 234.139 kb on + strandat 234.140 kb on - strandat 234.177 kb on + strandat 234.200 kb on - strandat 234.200 kb on - strandat 234.268 kb on + strand, within sgrRat 234.269 kb on - strand, within sgrRat 234.293 kb on + strand, within sgrRat 234.293 kb on + strand, within sgrRat 234.294 kb on - strand, within sgrRat 234.294 kb on - strand, within sgrRat 234.361 kb on - strand, within sgrRat 234.459 kb on - strand, within sgrRat 234.461 kb on + strand, within sgrRat 234.461 kb on + strand, within sgrRat 234.475 kb on + strand, within sgrRat 234.476 kb on - strand, within sgrRat 234.552 kb on + strand, within sgrRat 234.552 kb on + strand, within sgrRat 234.606 kb on + strand, within sgrRat 234.606 kb on + strand, within sgrRat 234.606 kb on + strand, within sgrRat 234.710 kb on - strand, within sgrRat 234.722 kb on + strand, within sgrRat 234.730 kb on + strand, within sgrR

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas14
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232,193 + leuC1 MCAODC_01240 0.32 -1.1
232,193 + leuC1 MCAODC_01240 0.32 -0.3
232,194 - leuC1 MCAODC_01240 0.32 -1.0
232,285 - leuC1 MCAODC_01240 0.39 -2.1
232,299 + leuC1 MCAODC_01240 0.40 +0.3
232,370 + leuC1 MCAODC_01240 0.45 -1.1
232,371 - leuC1 MCAODC_01240 0.45 -0.3
232,402 - leuC1 MCAODC_01240 0.47 -0.1
232,402 - leuC1 MCAODC_01240 0.47 -0.3
232,458 + leuC1 MCAODC_01240 0.51 +2.2
232,458 + leuC1 MCAODC_01240 0.51 -0.4
232,458 + leuC1 MCAODC_01240 0.51 -0.9
232,458 + leuC1 MCAODC_01240 0.51 -0.3
232,458 + leuC1 MCAODC_01240 0.51 -0.2
232,458 + leuC1 MCAODC_01240 0.51 +1.3
232,458 + leuC1 MCAODC_01240 0.51 +0.0
232,458 + leuC1 MCAODC_01240 0.51 -0.0
232,458 + leuC1 MCAODC_01240 0.51 +0.4
232,458 + leuC1 MCAODC_01240 0.51 +1.5
232,458 + leuC1 MCAODC_01240 0.51 +0.1
232,459 - leuC1 MCAODC_01240 0.51 -0.1
232,459 - leuC1 MCAODC_01240 0.51 +0.3
232,462 + leuC1 MCAODC_01240 0.52 -0.1
232,614 + leuC1 MCAODC_01240 0.62 +0.4
232,647 + leuC1 MCAODC_01240 0.65 -0.4
232,711 + leuC1 MCAODC_01240 0.69 -0.3
232,711 + leuC1 MCAODC_01240 0.69 +0.4
232,711 + leuC1 MCAODC_01240 0.69 -0.5
232,711 + leuC1 MCAODC_01240 0.69 -2.5
232,711 + leuC1 MCAODC_01240 0.69 -0.4
232,712 - leuC1 MCAODC_01240 0.69 -0.6
232,712 - leuC1 MCAODC_01240 0.69 -0.1
232,713 + leuC1 MCAODC_01240 0.70 +1.9
232,713 + leuC1 MCAODC_01240 0.70 +0.3
232,714 - leuC1 MCAODC_01240 0.70 -0.7
232,792 - leuC1 MCAODC_01240 0.75 -2.0
232,792 - leuC1 MCAODC_01240 0.75 -2.1
232,792 - leuC1 MCAODC_01240 0.75 -1.0
232,851 - leuC1 MCAODC_01240 0.79 +0.9
232,915 - leuC1 MCAODC_01240 0.84 +0.3
233,029 - +0.7
233,133 + +0.3
233,133 + +3.0
233,134 - -0.5
233,137 + +0.4
233,137 + +0.1
233,138 - -0.3
233,351 + leuD MCAODC_01245 0.33 -0.6
233,443 + leuD MCAODC_01245 0.48 +0.9
233,443 + leuD MCAODC_01245 0.48 -0.5
233,443 + leuD MCAODC_01245 0.48 +1.1
233,481 - leuD MCAODC_01245 0.55 +0.5
233,488 + leuD MCAODC_01245 0.56 -0.7
233,488 + leuD MCAODC_01245 0.56 -1.5
233,489 - leuD MCAODC_01245 0.56 +0.1
233,489 - leuD MCAODC_01245 0.56 -0.2
233,521 - leuD MCAODC_01245 0.61 -0.7
233,586 + leuD MCAODC_01245 0.72 -0.1
233,587 - leuD MCAODC_01245 0.72 -0.2
233,628 - leuD MCAODC_01245 0.79 -4.0
233,692 + leuD MCAODC_01245 0.89 +0.6
233,693 - leuD MCAODC_01245 0.90 -0.9
233,747 - +0.7
233,747 - -0.5
233,753 + -0.5
233,754 - +1.0
233,760 + -0.6
233,805 + -1.5
233,805 + +0.6
233,806 - -0.3
233,828 - +1.2
233,836 + -0.2
233,836 + -0.2
233,837 - +0.4
233,914 + +0.3
233,972 + -0.3
233,972 + -0.2
233,973 - +0.2
233,973 - +0.0
234,019 - +2.0
234,019 - -0.8
234,025 + +0.1
234,033 + -0.7
234,033 + +0.4
234,034 - -0.2
234,036 + -0.4
234,036 + -1.1
234,039 - -0.1
234,039 - -2.0
234,139 + +0.5
234,139 + -0.7
234,140 - -0.0
234,177 + -1.0
234,200 - -1.3
234,200 - +0.7
234,268 + sgrR MCAODC_01255 0.11 +0.6
234,269 - sgrR MCAODC_01255 0.11 -0.0
234,293 + sgrR MCAODC_01255 0.13 -0.7
234,293 + sgrR MCAODC_01255 0.13 -1.3
234,294 - sgrR MCAODC_01255 0.13 +0.5
234,294 - sgrR MCAODC_01255 0.13 +0.5
234,361 - sgrR MCAODC_01255 0.17 -1.1
234,459 - sgrR MCAODC_01255 0.23 +0.1
234,461 + sgrR MCAODC_01255 0.23 -0.8
234,461 + sgrR MCAODC_01255 0.23 -0.1
234,475 + sgrR MCAODC_01255 0.24 -0.4
234,476 - sgrR MCAODC_01255 0.24 +0.8
234,552 + sgrR MCAODC_01255 0.28 -0.2
234,552 + sgrR MCAODC_01255 0.28 -0.5
234,606 + sgrR MCAODC_01255 0.32 +0.0
234,606 + sgrR MCAODC_01255 0.32 -0.8
234,606 + sgrR MCAODC_01255 0.32 -0.5
234,710 - sgrR MCAODC_01255 0.38 +0.3
234,722 + sgrR MCAODC_01255 0.39 +0.2
234,730 + sgrR MCAODC_01255 0.39 +0.4

Or see this region's nucleotide sequence