Experiment: Thymine 0.793 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS00400 and A4249_RS16425 are separated by 316 nucleotides A4249_RS16425 and A4249_RS00410 are separated by 375 nucleotides A4249_RS00410 and A4249_RS00415 are separated by 61 nucleotides
A4249_RS00400: A4249_RS00400 - YdiU family protein, at 66,802 to 68,214
_RS00400
A4249_RS16425: A4249_RS16425 - hypothetical protein, at 68,531 to 69,388
_RS16425
A4249_RS00410: A4249_RS00410 - OmpA family protein, at 69,764 to 70,315
_RS00410
A4249_RS00415: A4249_RS00415 - NAD-dependent deacylase, at 70,377 to 71,087
_RS00415
Position (kb) 68
69
70 Strain fitness (log2 ratio) -2
-1
0
1
2 at 67.580 kb on + strand, within A4249_RS00400 at 67.580 kb on + strand, within A4249_RS00400 at 67.580 kb on + strand, within A4249_RS00400 at 67.580 kb on + strand, within A4249_RS00400 at 67.580 kb on + strand, within A4249_RS00400 at 67.580 kb on + strand, within A4249_RS00400 at 67.581 kb on - strand, within A4249_RS00400 at 67.587 kb on + strand, within A4249_RS00400 at 67.587 kb on + strand, within A4249_RS00400 at 67.588 kb on - strand, within A4249_RS00400 at 67.634 kb on + strand, within A4249_RS00400 at 67.634 kb on + strand, within A4249_RS00400 at 67.635 kb on - strand, within A4249_RS00400 at 67.635 kb on - strand, within A4249_RS00400 at 67.964 kb on + strand, within A4249_RS00400 at 67.964 kb on + strand, within A4249_RS00400 at 67.964 kb on + strand, within A4249_RS00400 at 67.964 kb on + strand, within A4249_RS00400 at 67.964 kb on + strand, within A4249_RS00400 at 67.964 kb on + strand, within A4249_RS00400 at 67.964 kb on + strand, within A4249_RS00400 at 67.965 kb on - strand, within A4249_RS00400 at 67.965 kb on - strand, within A4249_RS00400 at 67.965 kb on - strand, within A4249_RS00400 at 67.965 kb on - strand, within A4249_RS00400 at 67.965 kb on - strand, within A4249_RS00400 at 67.965 kb on - strand, within A4249_RS00400 at 67.965 kb on - strand, within A4249_RS00400 at 67.965 kb on - strand, within A4249_RS00400 at 68.156 kb on + strand at 68.156 kb on + strand at 68.156 kb on + strand at 68.156 kb on + strand at 68.157 kb on - strand at 68.157 kb on - strand at 68.194 kb on + strand at 68.195 kb on + strand at 68.222 kb on + strand at 68.222 kb on + strand at 68.222 kb on + strand at 68.223 kb on - strand at 68.223 kb on - strand at 68.223 kb on - strand at 68.223 kb on - strand at 68.331 kb on + strand at 68.331 kb on + strand at 68.331 kb on + strand at 68.331 kb on + strand at 68.331 kb on + strand at 68.331 kb on + strand at 68.331 kb on + strand at 68.332 kb on - strand at 68.332 kb on - strand at 68.332 kb on - strand at 68.332 kb on - strand at 68.350 kb on + strand at 68.351 kb on - strand at 68.351 kb on - strand at 68.351 kb on - strand at 68.450 kb on + strand at 68.478 kb on + strand at 68.478 kb on + strand at 68.478 kb on + strand at 68.478 kb on + strand at 68.478 kb on + strand at 68.478 kb on + strand at 68.479 kb on - strand at 68.479 kb on - strand at 68.479 kb on - strand at 68.483 kb on + strand at 68.483 kb on + strand at 68.483 kb on + strand at 68.484 kb on - strand at 68.484 kb on - strand at 68.484 kb on - strand at 68.484 kb on - strand at 68.487 kb on + strand at 68.487 kb on + strand at 68.487 kb on + strand at 68.487 kb on + strand at 68.487 kb on + strand at 68.487 kb on + strand at 68.487 kb on + strand at 68.487 kb on + strand at 68.488 kb on - strand at 68.488 kb on - strand at 68.488 kb on - strand at 68.795 kb on + strand, within A4249_RS16425 at 68.796 kb on - strand, within A4249_RS16425 at 68.796 kb on - strand, within A4249_RS16425 at 69.450 kb on - strand at 69.511 kb on + strand at 69.511 kb on + strand at 69.511 kb on + strand at 69.512 kb on - strand at 69.512 kb on - strand at 69.625 kb on - strand at 69.634 kb on - strand at 69.646 kb on + strand at 69.646 kb on + strand at 69.686 kb on - strand at 69.686 kb on - strand at 69.968 kb on + strand, within A4249_RS00410 at 69.968 kb on + strand, within A4249_RS00410 at 69.969 kb on - strand, within A4249_RS00410 at 69.969 kb on - strand, within A4249_RS00410 at 70.091 kb on + strand, within A4249_RS00410 at 70.091 kb on + strand, within A4249_RS00410 at 70.091 kb on + strand, within A4249_RS00410 at 70.091 kb on + strand, within A4249_RS00410 at 70.092 kb on - strand, within A4249_RS00410 at 70.092 kb on - strand, within A4249_RS00410 at 70.092 kb on - strand, within A4249_RS00410 at 70.092 kb on - strand, within A4249_RS00410 at 70.109 kb on + strand, within A4249_RS00410 at 70.110 kb on - strand, within A4249_RS00410 at 70.110 kb on - strand, within A4249_RS00410 at 70.110 kb on - strand, within A4249_RS00410 at 70.110 kb on - strand, within A4249_RS00410 at 70.138 kb on + strand, within A4249_RS00410 at 70.138 kb on + strand, within A4249_RS00410 at 70.229 kb on + strand, within A4249_RS00410 at 70.229 kb on + strand, within A4249_RS00410 at 70.229 kb on + strand, within A4249_RS00410 at 70.230 kb on - strand, within A4249_RS00410 at 70.230 kb on - strand, within A4249_RS00410 at 70.314 kb on - strand at 70.314 kb on - strand at 70.378 kb on + strand at 70.379 kb on - strand at 70.379 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C) remove 67,580 + A4249_RS00400 0.55 +0.6 67,580 + A4249_RS00400 0.55 +0.9 67,580 + A4249_RS00400 0.55 -0.1 67,580 + A4249_RS00400 0.55 -0.2 67,580 + A4249_RS00400 0.55 -0.6 67,580 + A4249_RS00400 0.55 +0.5 67,581 - A4249_RS00400 0.55 -0.7 67,587 + A4249_RS00400 0.56 +0.5 67,587 + A4249_RS00400 0.56 -0.6 67,588 - A4249_RS00400 0.56 +0.5 67,634 + A4249_RS00400 0.59 +0.3 67,634 + A4249_RS00400 0.59 +0.6 67,635 - A4249_RS00400 0.59 +0.3 67,635 - A4249_RS00400 0.59 -0.3 67,964 + A4249_RS00400 0.82 +0.5 67,964 + A4249_RS00400 0.82 +0.7 67,964 + A4249_RS00400 0.82 +0.5 67,964 + A4249_RS00400 0.82 -0.1 67,964 + A4249_RS00400 0.82 +0.2 67,964 + A4249_RS00400 0.82 +0.5 67,964 + A4249_RS00400 0.82 -0.4 67,965 - A4249_RS00400 0.82 +0.4 67,965 - A4249_RS00400 0.82 +0.3 67,965 - A4249_RS00400 0.82 +0.1 67,965 - A4249_RS00400 0.82 +0.4 67,965 - A4249_RS00400 0.82 +0.3 67,965 - A4249_RS00400 0.82 +0.0 67,965 - A4249_RS00400 0.82 +0.9 67,965 - A4249_RS00400 0.82 +0.6 68,156 + -1.2 68,156 + +0.4 68,156 + -0.1 68,156 + -0.5 68,157 - +0.9 68,157 - +0.5 68,194 + +0.7 68,195 + +0.3 68,222 + -0.2 68,222 + +0.0 68,222 + -0.1 68,223 - +0.8 68,223 - -0.3 68,223 - -0.5 68,223 - +0.3 68,331 + +0.5 68,331 + +0.2 68,331 + -0.2 68,331 + +0.3 68,331 + +0.2 68,331 + +0.8 68,331 + -0.7 68,332 - +0.1 68,332 - +0.3 68,332 - -1.5 68,332 - -0.6 68,350 + -1.8 68,351 - +1.3 68,351 - +0.5 68,351 - +1.2 68,450 + -0.4 68,478 + -0.1 68,478 + +0.6 68,478 + +0.1 68,478 + +0.1 68,478 + +1.0 68,478 + +0.3 68,479 - +0.6 68,479 - +0.8 68,479 - -0.4 68,483 + +0.4 68,483 + +0.3 68,483 + +1.0 68,484 - +0.5 68,484 - -0.3 68,484 - -0.2 68,484 - +0.6 68,487 + +0.2 68,487 + +0.1 68,487 + +0.3 68,487 + +0.3 68,487 + -0.6 68,487 + -0.2 68,487 + -0.4 68,487 + +0.8 68,488 - -0.4 68,488 - -0.6 68,488 - -1.0 68,795 + A4249_RS16425 0.31 -0.4 68,796 - A4249_RS16425 0.31 +1.0 68,796 - A4249_RS16425 0.31 +1.0 69,450 - -0.7 69,511 + -0.8 69,511 + -0.3 69,511 + -0.3 69,512 - -0.3 69,512 - -0.7 69,625 - -1.0 69,634 - -0.6 69,646 + -1.2 69,646 + +1.4 69,686 - +2.3 69,686 - -0.0 69,968 + A4249_RS00410 0.37 +0.6 69,968 + A4249_RS00410 0.37 -0.3 69,969 - A4249_RS00410 0.37 +0.3 69,969 - A4249_RS00410 0.37 +0.3 70,091 + A4249_RS00410 0.59 -0.3 70,091 + A4249_RS00410 0.59 -1.2 70,091 + A4249_RS00410 0.59 -0.4 70,091 + A4249_RS00410 0.59 +1.3 70,092 - A4249_RS00410 0.59 -0.2 70,092 - A4249_RS00410 0.59 +0.4 70,092 - A4249_RS00410 0.59 +0.3 70,092 - A4249_RS00410 0.59 +0.5 70,109 + A4249_RS00410 0.62 -0.0 70,110 - A4249_RS00410 0.63 -0.4 70,110 - A4249_RS00410 0.63 -1.0 70,110 - A4249_RS00410 0.63 +0.3 70,110 - A4249_RS00410 0.63 +0.0 70,138 + A4249_RS00410 0.68 -0.6 70,138 + A4249_RS00410 0.68 -1.0 70,229 + A4249_RS00410 0.84 +0.2 70,229 + A4249_RS00410 0.84 +0.2 70,229 + A4249_RS00410 0.84 +0.1 70,230 - A4249_RS00410 0.84 +0.9 70,230 - A4249_RS00410 0.84 +0.4 70,314 - -0.9 70,314 - -0.1 70,378 + -0.0 70,379 - -1.0 70,379 - +0.2
Or see this region's nucleotide sequence