Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15350

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15340 and A4249_RS15345 are separated by 26 nucleotidesA4249_RS15345 and A4249_RS15350 are separated by 87 nucleotidesA4249_RS15350 and A4249_RS15355 are separated by 18 nucleotides A4249_RS15340: A4249_RS15340 - tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD, at 3,107,154 to 3,108,986 _RS15340 A4249_RS15345: A4249_RS15345 - DUF6491 family protein, at 3,109,013 to 3,109,399 _RS15345 A4249_RS15350: A4249_RS15350 - hypothetical protein, at 3,109,487 to 3,109,927 _RS15350 A4249_RS15355: A4249_RS15355 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 3,109,946 to 3,112,372 _RS15355 Position (kb) 3109 3110Strain fitness (log2 ratio) -1 0 1 2 3at 3108.571 kb on - strand, within A4249_RS15340at 3108.775 kb on + strand, within A4249_RS15340at 3108.775 kb on + strand, within A4249_RS15340at 3108.801 kb on + strand, within A4249_RS15340at 3108.801 kb on + strand, within A4249_RS15340at 3108.801 kb on + strand, within A4249_RS15340at 3108.801 kb on + strand, within A4249_RS15340at 3108.801 kb on + strand, within A4249_RS15340at 3108.801 kb on + strand, within A4249_RS15340at 3108.801 kb on + strand, within A4249_RS15340at 3108.801 kb on + strand, within A4249_RS15340at 3108.801 kb on + strand, within A4249_RS15340at 3108.801 kb on + strand, within A4249_RS15340at 3108.802 kb on - strand, within A4249_RS15340at 3108.802 kb on - strand, within A4249_RS15340at 3108.802 kb on - strand, within A4249_RS15340at 3108.802 kb on - strand, within A4249_RS15340at 3108.802 kb on - strand, within A4249_RS15340at 3108.802 kb on - strand, within A4249_RS15340at 3108.802 kb on - strand, within A4249_RS15340at 3108.802 kb on - strand, within A4249_RS15340at 3108.802 kb on - strand, within A4249_RS15340at 3108.802 kb on - strand, within A4249_RS15340at 3108.802 kb on - strand, within A4249_RS15340at 3108.817 kb on + strandat 3108.818 kb on - strandat 3109.012 kb on + strandat 3109.012 kb on + strandat 3109.012 kb on + strandat 3109.012 kb on + strandat 3109.012 kb on + strandat 3109.012 kb on + strandat 3109.012 kb on + strandat 3109.012 kb on + strandat 3109.013 kb on - strandat 3109.013 kb on - strandat 3109.013 kb on - strandat 3109.013 kb on - strandat 3109.013 kb on - strandat 3109.051 kb on - strandat 3109.166 kb on + strand, within A4249_RS15345at 3109.166 kb on + strand, within A4249_RS15345at 3109.166 kb on + strand, within A4249_RS15345at 3109.166 kb on + strand, within A4249_RS15345at 3109.166 kb on + strand, within A4249_RS15345at 3109.166 kb on + strand, within A4249_RS15345at 3109.167 kb on - strand, within A4249_RS15345at 3109.167 kb on - strand, within A4249_RS15345at 3109.497 kb on + strandat 3109.497 kb on + strandat 3109.497 kb on + strandat 3109.498 kb on - strandat 3109.498 kb on - strandat 3109.592 kb on + strand, within A4249_RS15350at 3109.592 kb on + strand, within A4249_RS15350at 3109.592 kb on + strand, within A4249_RS15350at 3109.592 kb on + strand, within A4249_RS15350at 3109.593 kb on - strand, within A4249_RS15350at 3109.603 kb on + strand, within A4249_RS15350at 3109.603 kb on + strand, within A4249_RS15350at 3109.604 kb on - strand, within A4249_RS15350at 3109.604 kb on - strand, within A4249_RS15350at 3109.604 kb on - strand, within A4249_RS15350at 3109.605 kb on + strand, within A4249_RS15350at 3109.605 kb on + strand, within A4249_RS15350at 3109.605 kb on + strand, within A4249_RS15350at 3109.605 kb on + strand, within A4249_RS15350at 3109.605 kb on + strand, within A4249_RS15350at 3109.605 kb on + strand, within A4249_RS15350at 3109.605 kb on + strand, within A4249_RS15350at 3109.605 kb on + strand, within A4249_RS15350at 3109.605 kb on + strand, within A4249_RS15350at 3109.605 kb on + strand, within A4249_RS15350at 3109.605 kb on + strand, within A4249_RS15350at 3109.605 kb on + strand, within A4249_RS15350at 3109.605 kb on + strand, within A4249_RS15350at 3109.605 kb on + strand, within A4249_RS15350at 3109.605 kb on + strand, within A4249_RS15350at 3109.605 kb on + strand, within A4249_RS15350at 3109.605 kb on + strand, within A4249_RS15350at 3109.605 kb on + strand, within A4249_RS15350at 3109.606 kb on - strand, within A4249_RS15350at 3109.606 kb on - strand, within A4249_RS15350at 3109.606 kb on - strand, within A4249_RS15350at 3109.606 kb on - strand, within A4249_RS15350at 3109.606 kb on - strand, within A4249_RS15350at 3109.606 kb on - strand, within A4249_RS15350at 3109.606 kb on - strand, within A4249_RS15350at 3109.606 kb on - strand, within A4249_RS15350at 3109.606 kb on - strand, within A4249_RS15350at 3109.606 kb on - strand, within A4249_RS15350at 3109.606 kb on - strand, within A4249_RS15350at 3109.606 kb on - strand, within A4249_RS15350at 3109.606 kb on - strand, within A4249_RS15350at 3109.606 kb on - strand, within A4249_RS15350at 3109.606 kb on - strand, within A4249_RS15350at 3109.606 kb on - strand, within A4249_RS15350at 3109.606 kb on - strand, within A4249_RS15350at 3109.754 kb on + strand, within A4249_RS15350at 3109.754 kb on + strand, within A4249_RS15350at 3109.754 kb on + strand, within A4249_RS15350at 3109.754 kb on + strand, within A4249_RS15350at 3109.754 kb on + strand, within A4249_RS15350at 3109.755 kb on - strand, within A4249_RS15350at 3109.755 kb on - strand, within A4249_RS15350at 3109.755 kb on - strand, within A4249_RS15350at 3109.755 kb on - strand, within A4249_RS15350at 3109.755 kb on - strand, within A4249_RS15350at 3109.755 kb on - strand, within A4249_RS15350at 3109.755 kb on - strand, within A4249_RS15350at 3109.755 kb on - strand, within A4249_RS15350at 3109.755 kb on - strand, within A4249_RS15350at 3109.755 kb on - strand, within A4249_RS15350at 3109.755 kb on - strand, within A4249_RS15350at 3109.784 kb on + strand, within A4249_RS15350at 3109.784 kb on + strand, within A4249_RS15350at 3109.784 kb on + strand, within A4249_RS15350at 3109.784 kb on + strand, within A4249_RS15350at 3109.785 kb on - strand, within A4249_RS15350at 3109.785 kb on - strand, within A4249_RS15350at 3109.829 kb on + strand, within A4249_RS15350at 3109.829 kb on + strand, within A4249_RS15350at 3109.829 kb on + strand, within A4249_RS15350at 3109.829 kb on + strand, within A4249_RS15350at 3109.829 kb on + strand, within A4249_RS15350at 3109.829 kb on + strand, within A4249_RS15350at 3109.829 kb on + strand, within A4249_RS15350at 3109.829 kb on + strand, within A4249_RS15350at 3109.829 kb on + strand, within A4249_RS15350at 3109.830 kb on - strand, within A4249_RS15350at 3109.830 kb on - strand, within A4249_RS15350at 3109.830 kb on - strand, within A4249_RS15350at 3109.830 kb on - strand, within A4249_RS15350at 3109.830 kb on - strand, within A4249_RS15350at 3109.830 kb on - strand, within A4249_RS15350at 3109.830 kb on - strand, within A4249_RS15350at 3109.830 kb on - strand, within A4249_RS15350at 3109.830 kb on - strand, within A4249_RS15350at 3109.830 kb on - strand, within A4249_RS15350at 3109.830 kb on - strand, within A4249_RS15350at 3109.830 kb on - strand, within A4249_RS15350at 3109.925 kb on + strandat 3109.925 kb on + strandat 3109.926 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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3,108,571 - A4249_RS15340 0.77 -0.4
3,108,775 + A4249_RS15340 0.88 +0.1
3,108,775 + A4249_RS15340 0.88 -0.7
3,108,801 + A4249_RS15340 0.90 +0.5
3,108,801 + A4249_RS15340 0.90 -0.3
3,108,801 + A4249_RS15340 0.90 -0.1
3,108,801 + A4249_RS15340 0.90 -0.1
3,108,801 + A4249_RS15340 0.90 +0.6
3,108,801 + A4249_RS15340 0.90 -0.2
3,108,801 + A4249_RS15340 0.90 -0.8
3,108,801 + A4249_RS15340 0.90 +2.9
3,108,801 + A4249_RS15340 0.90 +0.4
3,108,801 + A4249_RS15340 0.90 -0.7
3,108,802 - A4249_RS15340 0.90 +0.7
3,108,802 - A4249_RS15340 0.90 -1.0
3,108,802 - A4249_RS15340 0.90 -0.0
3,108,802 - A4249_RS15340 0.90 -1.1
3,108,802 - A4249_RS15340 0.90 +1.1
3,108,802 - A4249_RS15340 0.90 -0.6
3,108,802 - A4249_RS15340 0.90 -0.1
3,108,802 - A4249_RS15340 0.90 -0.5
3,108,802 - A4249_RS15340 0.90 +1.6
3,108,802 - A4249_RS15340 0.90 -0.1
3,108,802 - A4249_RS15340 0.90 +0.3
3,108,817 + -0.8
3,108,818 - -0.8
3,109,012 + +0.3
3,109,012 + +0.1
3,109,012 + -0.2
3,109,012 + +2.1
3,109,012 + +0.4
3,109,012 + -0.3
3,109,012 + -0.4
3,109,012 + -0.1
3,109,013 - +0.1
3,109,013 - -0.7
3,109,013 - -1.2
3,109,013 - +1.4
3,109,013 - -0.9
3,109,051 - -1.6
3,109,166 + A4249_RS15345 0.40 -0.6
3,109,166 + A4249_RS15345 0.40 -1.4
3,109,166 + A4249_RS15345 0.40 -0.8
3,109,166 + A4249_RS15345 0.40 +0.8
3,109,166 + A4249_RS15345 0.40 +0.6
3,109,166 + A4249_RS15345 0.40 -0.6
3,109,167 - A4249_RS15345 0.40 -0.0
3,109,167 - A4249_RS15345 0.40 +0.6
3,109,497 + +0.5
3,109,497 + +0.5
3,109,497 + -0.2
3,109,498 - -0.0
3,109,498 - +0.3
3,109,592 + A4249_RS15350 0.24 +0.2
3,109,592 + A4249_RS15350 0.24 -0.2
3,109,592 + A4249_RS15350 0.24 +0.3
3,109,592 + A4249_RS15350 0.24 +0.1
3,109,593 - A4249_RS15350 0.24 +0.8
3,109,603 + A4249_RS15350 0.26 -0.4
3,109,603 + A4249_RS15350 0.26 +0.2
3,109,604 - A4249_RS15350 0.27 +0.2
3,109,604 - A4249_RS15350 0.27 -0.6
3,109,604 - A4249_RS15350 0.27 -1.4
3,109,605 + A4249_RS15350 0.27 -0.5
3,109,605 + A4249_RS15350 0.27 +0.5
3,109,605 + A4249_RS15350 0.27 -0.4
3,109,605 + A4249_RS15350 0.27 -0.2
3,109,605 + A4249_RS15350 0.27 -0.6
3,109,605 + A4249_RS15350 0.27 +0.6
3,109,605 + A4249_RS15350 0.27 -0.6
3,109,605 + A4249_RS15350 0.27 +0.2
3,109,605 + A4249_RS15350 0.27 -0.0
3,109,605 + A4249_RS15350 0.27 +2.7
3,109,605 + A4249_RS15350 0.27 +1.0
3,109,605 + A4249_RS15350 0.27 +0.5
3,109,605 + A4249_RS15350 0.27 -0.2
3,109,605 + A4249_RS15350 0.27 -0.2
3,109,605 + A4249_RS15350 0.27 +0.2
3,109,605 + A4249_RS15350 0.27 +0.1
3,109,605 + A4249_RS15350 0.27 +0.5
3,109,605 + A4249_RS15350 0.27 -0.1
3,109,606 - A4249_RS15350 0.27 +0.4
3,109,606 - A4249_RS15350 0.27 -0.6
3,109,606 - A4249_RS15350 0.27 +0.6
3,109,606 - A4249_RS15350 0.27 +0.1
3,109,606 - A4249_RS15350 0.27 +0.2
3,109,606 - A4249_RS15350 0.27 -0.6
3,109,606 - A4249_RS15350 0.27 +0.1
3,109,606 - A4249_RS15350 0.27 +0.2
3,109,606 - A4249_RS15350 0.27 +0.0
3,109,606 - A4249_RS15350 0.27 -0.9
3,109,606 - A4249_RS15350 0.27 -0.2
3,109,606 - A4249_RS15350 0.27 +0.1
3,109,606 - A4249_RS15350 0.27 -0.2
3,109,606 - A4249_RS15350 0.27 -0.3
3,109,606 - A4249_RS15350 0.27 +0.3
3,109,606 - A4249_RS15350 0.27 -0.2
3,109,606 - A4249_RS15350 0.27 +0.1
3,109,754 + A4249_RS15350 0.61 +0.3
3,109,754 + A4249_RS15350 0.61 -0.2
3,109,754 + A4249_RS15350 0.61 +0.1
3,109,754 + A4249_RS15350 0.61 -0.8
3,109,754 + A4249_RS15350 0.61 +0.4
3,109,755 - A4249_RS15350 0.61 -0.6
3,109,755 - A4249_RS15350 0.61 -1.3
3,109,755 - A4249_RS15350 0.61 +0.7
3,109,755 - A4249_RS15350 0.61 +0.8
3,109,755 - A4249_RS15350 0.61 +0.1
3,109,755 - A4249_RS15350 0.61 +0.3
3,109,755 - A4249_RS15350 0.61 +0.2
3,109,755 - A4249_RS15350 0.61 +0.2
3,109,755 - A4249_RS15350 0.61 -0.3
3,109,755 - A4249_RS15350 0.61 -1.2
3,109,755 - A4249_RS15350 0.61 -0.4
3,109,784 + A4249_RS15350 0.67 +0.6
3,109,784 + A4249_RS15350 0.67 -0.9
3,109,784 + A4249_RS15350 0.67 +0.3
3,109,784 + A4249_RS15350 0.67 -0.3
3,109,785 - A4249_RS15350 0.68 +1.1
3,109,785 - A4249_RS15350 0.68 +0.7
3,109,829 + A4249_RS15350 0.78 -0.2
3,109,829 + A4249_RS15350 0.78 +0.2
3,109,829 + A4249_RS15350 0.78 +0.1
3,109,829 + A4249_RS15350 0.78 -0.1
3,109,829 + A4249_RS15350 0.78 +0.0
3,109,829 + A4249_RS15350 0.78 -0.9
3,109,829 + A4249_RS15350 0.78 +0.4
3,109,829 + A4249_RS15350 0.78 -0.4
3,109,829 + A4249_RS15350 0.78 +0.5
3,109,830 - A4249_RS15350 0.78 +0.2
3,109,830 - A4249_RS15350 0.78 -0.2
3,109,830 - A4249_RS15350 0.78 +0.0
3,109,830 - A4249_RS15350 0.78 +0.2
3,109,830 - A4249_RS15350 0.78 +0.3
3,109,830 - A4249_RS15350 0.78 +0.3
3,109,830 - A4249_RS15350 0.78 -0.3
3,109,830 - A4249_RS15350 0.78 +0.6
3,109,830 - A4249_RS15350 0.78 +0.5
3,109,830 - A4249_RS15350 0.78 -0.2
3,109,830 - A4249_RS15350 0.78 +0.3
3,109,830 - A4249_RS15350 0.78 -0.6
3,109,925 + +0.4
3,109,925 + +0.8
3,109,926 - +0.3

Or see this region's nucleotide sequence