Experiment: Thymine 0.793 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS14395 and A4249_RS16980 are separated by 71 nucleotides A4249_RS16980 and A4249_RS14400 overlap by 40 nucleotides A4249_RS14400 and A4249_RS14405 are separated by 91 nucleotides A4249_RS14405 and A4249_RS14410 are separated by 177 nucleotides
A4249_RS14395: A4249_RS14395 - hypothetical protein, at 2,909,451 to 2,909,906
_RS14395
A4249_RS16980: A4249_RS16980 - LytTR family transcriptional regulator DNA-binding domain-containing protein, at 2,909,978 to 2,910,091
_RS16980
A4249_RS14400: A4249_RS14400 - LytTR family transcriptional regulator DNA-binding domain-containing protein, at 2,910,052 to 2,910,741
_RS14400
A4249_RS14405: A4249_RS14405 - TetR/AcrR family transcriptional regulator, at 2,910,833 to 2,911,588
_RS14405
A4249_RS14410: A4249_RS14410 - TonB-dependent receptor, at 2,911,766 to 2,913,994
_RS14410
Position (kb)
2910
2911
2912 Strain fitness (log2 ratio)
-2
-1
0
1 at 2910.216 kb on - strand, within A4249_RS14400 at 2910.216 kb on - strand, within A4249_RS14400 at 2910.425 kb on + strand, within A4249_RS14400 at 2910.425 kb on + strand, within A4249_RS14400 at 2910.608 kb on + strand, within A4249_RS14400 at 2910.609 kb on - strand, within A4249_RS14400 at 2910.609 kb on - strand, within A4249_RS14400 at 2910.609 kb on - strand, within A4249_RS14400 at 2910.609 kb on - strand, within A4249_RS14400 at 2910.609 kb on - strand, within A4249_RS14400 at 2910.609 kb on - strand, within A4249_RS14400 at 2910.619 kb on + strand, within A4249_RS14400 at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.895 kb on + strand at 2910.896 kb on - strand at 2910.896 kb on - strand at 2910.896 kb on - strand at 2910.896 kb on - strand at 2910.896 kb on - strand at 2910.896 kb on - strand at 2910.896 kb on - strand at 2910.896 kb on - strand at 2910.896 kb on - strand at 2910.897 kb on + strand at 2910.897 kb on + strand at 2910.897 kb on + strand at 2910.897 kb on + strand at 2910.897 kb on + strand at 2910.897 kb on + strand at 2910.897 kb on + strand at 2910.897 kb on + strand at 2910.897 kb on + strand at 2910.898 kb on - strand at 2910.898 kb on - strand at 2910.898 kb on - strand at 2910.898 kb on - strand at 2911.005 kb on + strand, within A4249_RS14405 at 2911.005 kb on + strand, within A4249_RS14405 at 2911.006 kb on - strand, within A4249_RS14405 at 2911.015 kb on - strand, within A4249_RS14405 at 2911.015 kb on - strand, within A4249_RS14405 at 2911.015 kb on - strand, within A4249_RS14405 at 2911.060 kb on - strand, within A4249_RS14405 at 2911.152 kb on + strand, within A4249_RS14405 at 2911.152 kb on + strand, within A4249_RS14405 at 2911.152 kb on + strand, within A4249_RS14405 at 2911.152 kb on + strand, within A4249_RS14405 at 2911.153 kb on - strand, within A4249_RS14405 at 2911.153 kb on - strand, within A4249_RS14405 at 2911.153 kb on - strand, within A4249_RS14405 at 2911.153 kb on - strand, within A4249_RS14405 at 2911.257 kb on + strand, within A4249_RS14405 at 2911.257 kb on + strand, within A4249_RS14405 at 2911.257 kb on + strand, within A4249_RS14405 at 2911.257 kb on + strand, within A4249_RS14405 at 2911.258 kb on - strand, within A4249_RS14405 at 2911.347 kb on + strand, within A4249_RS14405 at 2911.347 kb on + strand, within A4249_RS14405 at 2911.347 kb on + strand, within A4249_RS14405 at 2911.347 kb on + strand, within A4249_RS14405 at 2911.347 kb on + strand, within A4249_RS14405 at 2911.348 kb on - strand, within A4249_RS14405 at 2911.348 kb on - strand, within A4249_RS14405 at 2911.348 kb on - strand, within A4249_RS14405 at 2911.348 kb on - strand, within A4249_RS14405 at 2911.348 kb on - strand, within A4249_RS14405 at 2911.348 kb on - strand, within A4249_RS14405 at 2911.348 kb on - strand, within A4249_RS14405 at 2911.348 kb on - strand, within A4249_RS14405 at 2911.350 kb on + strand, within A4249_RS14405 at 2911.351 kb on - strand, within A4249_RS14405 at 2911.351 kb on - strand, within A4249_RS14405 at 2911.351 kb on - strand, within A4249_RS14405 at 2911.410 kb on + strand, within A4249_RS14405 at 2911.599 kb on + strand at 2911.692 kb on + strand at 2911.759 kb on + strand at 2911.759 kb on + strand at 2911.759 kb on + strand at 2911.760 kb on - strand at 2911.760 kb on - strand at 2912.138 kb on + strand, within A4249_RS14410 at 2912.138 kb on + strand, within A4249_RS14410 at 2912.138 kb on + strand, within A4249_RS14410 at 2912.138 kb on + strand, within A4249_RS14410 at 2912.139 kb on - strand, within A4249_RS14410 at 2912.139 kb on - strand, within A4249_RS14410 at 2912.139 kb on - strand, within A4249_RS14410 at 2912.139 kb on - strand, within A4249_RS14410 at 2912.153 kb on + strand, within A4249_RS14410 at 2912.153 kb on + strand, within A4249_RS14410 at 2912.153 kb on + strand, within A4249_RS14410 at 2912.153 kb on + strand, within A4249_RS14410 at 2912.153 kb on + strand, within A4249_RS14410 at 2912.153 kb on + strand, within A4249_RS14410 at 2912.153 kb on + strand, within A4249_RS14410 at 2912.153 kb on + strand, within A4249_RS14410 at 2912.153 kb on + strand, within A4249_RS14410 at 2912.154 kb on - strand, within A4249_RS14410 at 2912.154 kb on - strand, within A4249_RS14410 at 2912.154 kb on - strand, within A4249_RS14410 at 2912.185 kb on + strand, within A4249_RS14410 at 2912.186 kb on - strand, within A4249_RS14410 at 2912.186 kb on - strand, within A4249_RS14410 at 2912.238 kb on - strand, within A4249_RS14410 at 2912.266 kb on + strand, within A4249_RS14410 at 2912.266 kb on + strand, within A4249_RS14410 at 2912.267 kb on - strand, within A4249_RS14410 at 2912.267 kb on - strand, within A4249_RS14410 at 2912.267 kb on - strand, within A4249_RS14410 at 2912.270 kb on + strand, within A4249_RS14410 at 2912.270 kb on + strand, within A4249_RS14410 at 2912.270 kb on + strand, within A4249_RS14410 at 2912.270 kb on + strand, within A4249_RS14410 at 2912.270 kb on + strand, within A4249_RS14410 at 2912.270 kb on + strand, within A4249_RS14410 at 2912.270 kb on + strand, within A4249_RS14410 at 2912.270 kb on + strand, within A4249_RS14410 at 2912.271 kb on - strand, within A4249_RS14410 at 2912.271 kb on - strand, within A4249_RS14410 at 2912.271 kb on - strand, within A4249_RS14410 at 2912.271 kb on - strand, within A4249_RS14410 at 2912.271 kb on - strand, within A4249_RS14410 at 2912.271 kb on - strand, within A4249_RS14410 at 2912.271 kb on - strand, within A4249_RS14410 at 2912.271 kb on - strand, within A4249_RS14410 at 2912.330 kb on + strand, within A4249_RS14410 at 2912.331 kb on - strand, within A4249_RS14410 at 2912.332 kb on + strand, within A4249_RS14410 at 2912.332 kb on + strand, within A4249_RS14410 at 2912.408 kb on + strand, within A4249_RS14410 at 2912.408 kb on + strand, within A4249_RS14410 at 2912.408 kb on + strand, within A4249_RS14410 at 2912.408 kb on + strand, within A4249_RS14410 at 2912.408 kb on + strand, within A4249_RS14410 at 2912.408 kb on + strand, within A4249_RS14410 at 2912.408 kb on + strand, within A4249_RS14410 at 2912.408 kb on + strand, within A4249_RS14410 at 2912.408 kb on + strand, within A4249_RS14410 at 2912.409 kb on - strand, within A4249_RS14410 at 2912.409 kb on - strand, within A4249_RS14410 at 2912.409 kb on - strand, within A4249_RS14410 at 2912.456 kb on + strand, within A4249_RS14410 at 2912.456 kb on + strand, within A4249_RS14410 at 2912.457 kb on - strand, within A4249_RS14410 at 2912.457 kb on - strand, within A4249_RS14410 at 2912.457 kb on - strand, within A4249_RS14410
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C) remove 2,910,216 - A4249_RS14400 0.24 -0.2 2,910,216 - A4249_RS14400 0.24 -0.7 2,910,425 + A4249_RS14400 0.54 +0.4 2,910,425 + A4249_RS14400 0.54 -1.0 2,910,608 + A4249_RS14400 0.81 +0.0 2,910,609 - A4249_RS14400 0.81 -0.0 2,910,609 - A4249_RS14400 0.81 -0.8 2,910,609 - A4249_RS14400 0.81 -0.3 2,910,609 - A4249_RS14400 0.81 +0.3 2,910,609 - A4249_RS14400 0.81 +0.5 2,910,609 - A4249_RS14400 0.81 +0.4 2,910,619 + A4249_RS14400 0.82 -0.8 2,910,895 + +0.7 2,910,895 + +0.1 2,910,895 + -0.5 2,910,895 + -0.8 2,910,895 + -0.0 2,910,895 + -0.1 2,910,895 + -0.2 2,910,895 + +0.8 2,910,895 + -2.1 2,910,895 + +0.2 2,910,895 + +0.5 2,910,895 + +0.1 2,910,895 + +0.3 2,910,896 - +0.1 2,910,896 - +0.8 2,910,896 - +0.3 2,910,896 - -0.5 2,910,896 - +0.4 2,910,896 - +0.8 2,910,896 - -0.3 2,910,896 - -0.0 2,910,896 - -0.1 2,910,897 + -0.4 2,910,897 + +0.6 2,910,897 + -0.7 2,910,897 + +0.2 2,910,897 + -0.2 2,910,897 + +0.1 2,910,897 + -0.1 2,910,897 + -0.1 2,910,897 + -0.0 2,910,898 - +0.2 2,910,898 - +0.4 2,910,898 - -0.5 2,910,898 - +0.1 2,911,005 + A4249_RS14405 0.23 +0.1 2,911,005 + A4249_RS14405 0.23 -0.2 2,911,006 - A4249_RS14405 0.23 -1.6 2,911,015 - A4249_RS14405 0.24 -0.5 2,911,015 - A4249_RS14405 0.24 +0.2 2,911,015 - A4249_RS14405 0.24 +0.4 2,911,060 - A4249_RS14405 0.30 -0.1 2,911,152 + A4249_RS14405 0.42 -0.9 2,911,152 + A4249_RS14405 0.42 -0.1 2,911,152 + A4249_RS14405 0.42 +0.2 2,911,152 + A4249_RS14405 0.42 +0.2 2,911,153 - A4249_RS14405 0.42 +0.3 2,911,153 - A4249_RS14405 0.42 -0.6 2,911,153 - A4249_RS14405 0.42 -1.0 2,911,153 - A4249_RS14405 0.42 +0.3 2,911,257 + A4249_RS14405 0.56 +0.4 2,911,257 + A4249_RS14405 0.56 +1.0 2,911,257 + A4249_RS14405 0.56 +1.0 2,911,257 + A4249_RS14405 0.56 -0.3 2,911,258 - A4249_RS14405 0.56 -0.1 2,911,347 + A4249_RS14405 0.68 -0.8 2,911,347 + A4249_RS14405 0.68 +0.4 2,911,347 + A4249_RS14405 0.68 -0.3 2,911,347 + A4249_RS14405 0.68 +0.5 2,911,347 + A4249_RS14405 0.68 +1.5 2,911,348 - A4249_RS14405 0.68 +0.3 2,911,348 - A4249_RS14405 0.68 +0.9 2,911,348 - A4249_RS14405 0.68 -0.6 2,911,348 - A4249_RS14405 0.68 -0.4 2,911,348 - A4249_RS14405 0.68 -0.4 2,911,348 - A4249_RS14405 0.68 +0.1 2,911,348 - A4249_RS14405 0.68 +0.4 2,911,348 - A4249_RS14405 0.68 +0.3 2,911,350 + A4249_RS14405 0.68 -0.1 2,911,351 - A4249_RS14405 0.69 -0.1 2,911,351 - A4249_RS14405 0.69 -0.0 2,911,351 - A4249_RS14405 0.69 -0.5 2,911,410 + A4249_RS14405 0.76 +0.0 2,911,599 + -0.1 2,911,692 + -0.5 2,911,759 + -0.7 2,911,759 + -0.3 2,911,759 + -0.1 2,911,760 - +0.1 2,911,760 - -0.1 2,912,138 + A4249_RS14410 0.17 +0.3 2,912,138 + A4249_RS14410 0.17 -0.3 2,912,138 + A4249_RS14410 0.17 +0.9 2,912,138 + A4249_RS14410 0.17 +0.2 2,912,139 - A4249_RS14410 0.17 -0.2 2,912,139 - A4249_RS14410 0.17 +0.6 2,912,139 - A4249_RS14410 0.17 -0.4 2,912,139 - A4249_RS14410 0.17 -0.4 2,912,153 + A4249_RS14410 0.17 -0.5 2,912,153 + A4249_RS14410 0.17 -0.5 2,912,153 + A4249_RS14410 0.17 -0.4 2,912,153 + A4249_RS14410 0.17 -0.3 2,912,153 + A4249_RS14410 0.17 +0.1 2,912,153 + A4249_RS14410 0.17 -0.8 2,912,153 + A4249_RS14410 0.17 +0.3 2,912,153 + A4249_RS14410 0.17 +0.1 2,912,153 + A4249_RS14410 0.17 -0.9 2,912,154 - A4249_RS14410 0.17 +0.4 2,912,154 - A4249_RS14410 0.17 +0.5 2,912,154 - A4249_RS14410 0.17 -0.2 2,912,185 + A4249_RS14410 0.19 +0.8 2,912,186 - A4249_RS14410 0.19 +0.9 2,912,186 - A4249_RS14410 0.19 +0.6 2,912,238 - A4249_RS14410 0.21 +0.9 2,912,266 + A4249_RS14410 0.22 +0.3 2,912,266 + A4249_RS14410 0.22 -0.8 2,912,267 - A4249_RS14410 0.22 -1.1 2,912,267 - A4249_RS14410 0.22 +0.8 2,912,267 - A4249_RS14410 0.22 -0.0 2,912,270 + A4249_RS14410 0.23 -0.1 2,912,270 + A4249_RS14410 0.23 -0.2 2,912,270 + A4249_RS14410 0.23 -0.4 2,912,270 + A4249_RS14410 0.23 -0.5 2,912,270 + A4249_RS14410 0.23 +0.4 2,912,270 + A4249_RS14410 0.23 +0.1 2,912,270 + A4249_RS14410 0.23 -0.1 2,912,270 + A4249_RS14410 0.23 -1.1 2,912,271 - A4249_RS14410 0.23 -0.9 2,912,271 - A4249_RS14410 0.23 +0.2 2,912,271 - A4249_RS14410 0.23 -0.4 2,912,271 - A4249_RS14410 0.23 -0.4 2,912,271 - A4249_RS14410 0.23 +0.5 2,912,271 - A4249_RS14410 0.23 +0.6 2,912,271 - A4249_RS14410 0.23 +0.2 2,912,271 - A4249_RS14410 0.23 -1.1 2,912,330 + A4249_RS14410 0.25 +0.7 2,912,331 - A4249_RS14410 0.25 +0.2 2,912,332 + A4249_RS14410 0.25 +0.0 2,912,332 + A4249_RS14410 0.25 +1.3 2,912,408 + A4249_RS14410 0.29 +0.1 2,912,408 + A4249_RS14410 0.29 +0.1 2,912,408 + A4249_RS14410 0.29 -0.5 2,912,408 + A4249_RS14410 0.29 -0.4 2,912,408 + A4249_RS14410 0.29 +0.1 2,912,408 + A4249_RS14410 0.29 +1.4 2,912,408 + A4249_RS14410 0.29 +0.0 2,912,408 + A4249_RS14410 0.29 -0.2 2,912,408 + A4249_RS14410 0.29 +0.3 2,912,409 - A4249_RS14410 0.29 -0.1 2,912,409 - A4249_RS14410 0.29 +0.1 2,912,409 - A4249_RS14410 0.29 +0.4 2,912,456 + A4249_RS14410 0.31 +0.6 2,912,456 + A4249_RS14410 0.31 +0.1 2,912,457 - A4249_RS14410 0.31 -0.4 2,912,457 - A4249_RS14410 0.31 +0.2 2,912,457 - A4249_RS14410 0.31 -0.2
Or see this region's nucleotide sequence