Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13870

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS13860 and A4249_RS13865 are separated by 116 nucleotidesA4249_RS13865 and A4249_RS13870 are separated by 1 nucleotidesA4249_RS13870 and A4249_RS13875 are separated by 76 nucleotidesA4249_RS13875 and A4249_RS13880 are separated by 54 nucleotides A4249_RS13860: A4249_RS13860 - hypothetical protein, at 2,798,600 to 2,798,944 _RS13860 A4249_RS13865: A4249_RS13865 - electron transfer flavoprotein subunit beta/FixA family protein, at 2,799,061 to 2,799,825 _RS13865 A4249_RS13870: A4249_RS13870 - electron transfer flavoprotein subunit alpha/FixB family protein, at 2,799,827 to 2,800,756 _RS13870 A4249_RS13875: A4249_RS13875 - DUF167 domain-containing protein, at 2,800,833 to 2,801,123 _RS13875 A4249_RS13880: A4249_RS13880 - hypothetical protein, at 2,801,178 to 2,801,378 _RS13880 Position (kb) 2799 2800 2801Strain fitness (log2 ratio) -1 0 1at 2798.992 kb on + strandat 2798.992 kb on + strandat 2798.992 kb on + strandat 2798.993 kb on - strandat 2798.993 kb on - strandat 2798.993 kb on - strandat 2798.993 kb on - strandat 2798.993 kb on - strandat 2800.755 kb on - strandat 2800.822 kb on + strandat 2800.823 kb on - strandat 2800.849 kb on + strandat 2800.850 kb on - strandat 2800.850 kb on - strandat 2801.244 kb on + strand, within A4249_RS13880at 2801.244 kb on + strand, within A4249_RS13880at 2801.244 kb on + strand, within A4249_RS13880at 2801.244 kb on + strand, within A4249_RS13880at 2801.244 kb on + strand, within A4249_RS13880at 2801.244 kb on + strand, within A4249_RS13880at 2801.244 kb on + strand, within A4249_RS13880at 2801.244 kb on + strand, within A4249_RS13880at 2801.244 kb on + strand, within A4249_RS13880at 2801.244 kb on + strand, within A4249_RS13880at 2801.244 kb on + strand, within A4249_RS13880at 2801.244 kb on + strand, within A4249_RS13880at 2801.244 kb on + strand, within A4249_RS13880at 2801.245 kb on - strand, within A4249_RS13880at 2801.245 kb on - strand, within A4249_RS13880at 2801.245 kb on - strand, within A4249_RS13880at 2801.245 kb on - strand, within A4249_RS13880at 2801.246 kb on + strand, within A4249_RS13880at 2801.246 kb on + strand, within A4249_RS13880at 2801.246 kb on + strand, within A4249_RS13880at 2801.246 kb on + strand, within A4249_RS13880at 2801.246 kb on + strand, within A4249_RS13880at 2801.247 kb on - strand, within A4249_RS13880

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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2,798,992 + -0.1
2,798,992 + +0.0
2,798,992 + +1.7
2,798,993 - -0.1
2,798,993 - -0.4
2,798,993 - +0.3
2,798,993 - +0.1
2,798,993 - -0.2
2,800,755 - -0.5
2,800,822 + +0.2
2,800,823 - +1.2
2,800,849 + -0.2
2,800,850 - -0.7
2,800,850 - +0.5
2,801,244 + A4249_RS13880 0.33 -0.1
2,801,244 + A4249_RS13880 0.33 -0.5
2,801,244 + A4249_RS13880 0.33 +0.4
2,801,244 + A4249_RS13880 0.33 -0.5
2,801,244 + A4249_RS13880 0.33 +0.3
2,801,244 + A4249_RS13880 0.33 +0.4
2,801,244 + A4249_RS13880 0.33 -0.7
2,801,244 + A4249_RS13880 0.33 +0.3
2,801,244 + A4249_RS13880 0.33 +0.6
2,801,244 + A4249_RS13880 0.33 -0.3
2,801,244 + A4249_RS13880 0.33 +0.3
2,801,244 + A4249_RS13880 0.33 +0.6
2,801,244 + A4249_RS13880 0.33 -1.1
2,801,245 - A4249_RS13880 0.33 +1.1
2,801,245 - A4249_RS13880 0.33 -0.1
2,801,245 - A4249_RS13880 0.33 -0.5
2,801,245 - A4249_RS13880 0.33 +0.3
2,801,246 + A4249_RS13880 0.34 -0.5
2,801,246 + A4249_RS13880 0.34 +0.5
2,801,246 + A4249_RS13880 0.34 +0.2
2,801,246 + A4249_RS13880 0.34 +0.2
2,801,246 + A4249_RS13880 0.34 +1.2
2,801,247 - A4249_RS13880 0.34 +0.9

Or see this region's nucleotide sequence