Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13700

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS13690 and A4249_RS13695 are separated by 40 nucleotidesA4249_RS13695 and A4249_RS13700 are separated by 36 nucleotidesA4249_RS13700 and A4249_RS13705 are separated by 102 nucleotides A4249_RS13690: A4249_RS13690 - transcription termination factor Rho, at 2,765,932 to 2,767,365 _RS13690 A4249_RS13695: A4249_RS13695 - DUF6489 family protein, at 2,767,406 to 2,767,630 _RS13695 A4249_RS13700: A4249_RS13700 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 2,767,667 to 2,768,974 _RS13700 A4249_RS13705: A4249_RS13705 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 2,769,077 to 2,770,957 _RS13705 Position (kb) 2767 2768 2769Strain fitness (log2 ratio) -2 -1 0 1 2at 2767.623 kb on + strandat 2767.874 kb on + strand, within A4249_RS13700at 2767.874 kb on + strand, within A4249_RS13700at 2767.874 kb on + strand, within A4249_RS13700at 2767.874 kb on + strand, within A4249_RS13700at 2767.874 kb on + strand, within A4249_RS13700at 2767.874 kb on + strand, within A4249_RS13700at 2767.875 kb on - strand, within A4249_RS13700at 2767.875 kb on - strand, within A4249_RS13700at 2767.875 kb on - strand, within A4249_RS13700at 2767.875 kb on - strand, within A4249_RS13700at 2767.876 kb on + strand, within A4249_RS13700at 2767.876 kb on + strand, within A4249_RS13700at 2767.877 kb on - strand, within A4249_RS13700at 2768.120 kb on + strand, within A4249_RS13700at 2768.120 kb on + strand, within A4249_RS13700at 2768.120 kb on + strand, within A4249_RS13700at 2768.120 kb on + strand, within A4249_RS13700at 2768.120 kb on + strand, within A4249_RS13700at 2768.120 kb on + strand, within A4249_RS13700at 2768.120 kb on + strand, within A4249_RS13700at 2768.120 kb on + strand, within A4249_RS13700at 2768.120 kb on + strand, within A4249_RS13700at 2768.121 kb on - strand, within A4249_RS13700at 2768.121 kb on - strand, within A4249_RS13700at 2768.121 kb on - strand, within A4249_RS13700at 2768.121 kb on - strand, within A4249_RS13700at 2768.445 kb on - strand, within A4249_RS13700at 2768.464 kb on + strand, within A4249_RS13700at 2768.597 kb on + strand, within A4249_RS13700at 2768.598 kb on - strand, within A4249_RS13700at 2768.598 kb on - strand, within A4249_RS13700at 2768.640 kb on + strand, within A4249_RS13700at 2768.640 kb on + strand, within A4249_RS13700at 2768.640 kb on + strand, within A4249_RS13700at 2768.641 kb on - strand, within A4249_RS13700at 2768.666 kb on + strand, within A4249_RS13700at 2768.666 kb on + strand, within A4249_RS13700at 2768.666 kb on + strand, within A4249_RS13700at 2768.972 kb on + strandat 2768.973 kb on - strandat 2768.978 kb on + strandat 2768.978 kb on + strandat 2769.017 kb on + strandat 2769.017 kb on + strandat 2769.018 kb on - strandat 2769.018 kb on - strandat 2769.018 kb on - strandat 2769.091 kb on - strandat 2769.232 kb on + strandat 2769.333 kb on + strand, within A4249_RS13705at 2769.334 kb on - strand, within A4249_RS13705at 2769.392 kb on + strand, within A4249_RS13705at 2769.466 kb on + strand, within A4249_RS13705at 2769.467 kb on - strand, within A4249_RS13705at 2769.467 kb on - strand, within A4249_RS13705at 2769.467 kb on - strand, within A4249_RS13705at 2769.658 kb on + strand, within A4249_RS13705at 2769.659 kb on - strand, within A4249_RS13705at 2769.659 kb on - strand, within A4249_RS13705at 2769.872 kb on + strand, within A4249_RS13705at 2769.872 kb on + strand, within A4249_RS13705at 2769.872 kb on + strand, within A4249_RS13705at 2769.873 kb on - strand, within A4249_RS13705at 2769.873 kb on - strand, within A4249_RS13705at 2769.873 kb on - strand, within A4249_RS13705at 2769.873 kb on - strand, within A4249_RS13705at 2769.873 kb on - strand, within A4249_RS13705at 2769.905 kb on + strand, within A4249_RS13705at 2769.905 kb on + strand, within A4249_RS13705

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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2,767,623 + +0.1
2,767,874 + A4249_RS13700 0.16 +0.1
2,767,874 + A4249_RS13700 0.16 +0.9
2,767,874 + A4249_RS13700 0.16 -0.9
2,767,874 + A4249_RS13700 0.16 -0.3
2,767,874 + A4249_RS13700 0.16 +0.3
2,767,874 + A4249_RS13700 0.16 -1.0
2,767,875 - A4249_RS13700 0.16 +0.7
2,767,875 - A4249_RS13700 0.16 +1.8
2,767,875 - A4249_RS13700 0.16 -2.0
2,767,875 - A4249_RS13700 0.16 +0.7
2,767,876 + A4249_RS13700 0.16 -0.3
2,767,876 + A4249_RS13700 0.16 -0.9
2,767,877 - A4249_RS13700 0.16 -0.9
2,768,120 + A4249_RS13700 0.35 -0.3
2,768,120 + A4249_RS13700 0.35 +1.1
2,768,120 + A4249_RS13700 0.35 +0.4
2,768,120 + A4249_RS13700 0.35 -0.3
2,768,120 + A4249_RS13700 0.35 +0.7
2,768,120 + A4249_RS13700 0.35 -1.5
2,768,120 + A4249_RS13700 0.35 -1.3
2,768,120 + A4249_RS13700 0.35 -0.3
2,768,120 + A4249_RS13700 0.35 -0.6
2,768,121 - A4249_RS13700 0.35 -0.9
2,768,121 - A4249_RS13700 0.35 -0.3
2,768,121 - A4249_RS13700 0.35 -1.5
2,768,121 - A4249_RS13700 0.35 +0.9
2,768,445 - A4249_RS13700 0.59 +0.7
2,768,464 + A4249_RS13700 0.61 +0.9
2,768,597 + A4249_RS13700 0.71 -0.1
2,768,598 - A4249_RS13700 0.71 +0.3
2,768,598 - A4249_RS13700 0.71 -0.4
2,768,640 + A4249_RS13700 0.74 -0.1
2,768,640 + A4249_RS13700 0.74 +0.7
2,768,640 + A4249_RS13700 0.74 -0.2
2,768,641 - A4249_RS13700 0.74 +1.7
2,768,666 + A4249_RS13700 0.76 -0.1
2,768,666 + A4249_RS13700 0.76 -1.7
2,768,666 + A4249_RS13700 0.76 -0.3
2,768,972 + -0.6
2,768,973 - -0.9
2,768,978 + -0.1
2,768,978 + +0.1
2,769,017 + +0.1
2,769,017 + +1.2
2,769,018 - -0.3
2,769,018 - +0.4
2,769,018 - +0.1
2,769,091 - -1.1
2,769,232 + -1.1
2,769,333 + A4249_RS13705 0.14 +0.0
2,769,334 - A4249_RS13705 0.14 -0.7
2,769,392 + A4249_RS13705 0.17 -1.8
2,769,466 + A4249_RS13705 0.21 -0.3
2,769,467 - A4249_RS13705 0.21 -1.5
2,769,467 - A4249_RS13705 0.21 -0.7
2,769,467 - A4249_RS13705 0.21 -0.7
2,769,658 + A4249_RS13705 0.31 +0.7
2,769,659 - A4249_RS13705 0.31 -0.1
2,769,659 - A4249_RS13705 0.31 -2.5
2,769,872 + A4249_RS13705 0.42 -0.7
2,769,872 + A4249_RS13705 0.42 -1.5
2,769,872 + A4249_RS13705 0.42 +0.1
2,769,873 - A4249_RS13705 0.42 +0.3
2,769,873 - A4249_RS13705 0.42 +1.3
2,769,873 - A4249_RS13705 0.42 -0.6
2,769,873 - A4249_RS13705 0.42 +0.1
2,769,873 - A4249_RS13705 0.42 +0.7
2,769,905 + A4249_RS13705 0.44 -0.3
2,769,905 + A4249_RS13705 0.44 -0.9

Or see this region's nucleotide sequence