Experiment: Thymine 0.793 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS13690 and A4249_RS13695 are separated by 40 nucleotides A4249_RS13695 and A4249_RS13700 are separated by 36 nucleotides A4249_RS13700 and A4249_RS13705 are separated by 102 nucleotides
A4249_RS13690: A4249_RS13690 - transcription termination factor Rho, at 2,765,932 to 2,767,365
_RS13690
A4249_RS13695: A4249_RS13695 - DUF6489 family protein, at 2,767,406 to 2,767,630
_RS13695
A4249_RS13700: A4249_RS13700 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 2,767,667 to 2,768,974
_RS13700
A4249_RS13705: A4249_RS13705 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 2,769,077 to 2,770,957
_RS13705
Position (kb)
2767
2768
2769 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2767.623 kb on + strand at 2767.874 kb on + strand, within A4249_RS13700 at 2767.874 kb on + strand, within A4249_RS13700 at 2767.874 kb on + strand, within A4249_RS13700 at 2767.874 kb on + strand, within A4249_RS13700 at 2767.874 kb on + strand, within A4249_RS13700 at 2767.874 kb on + strand, within A4249_RS13700 at 2767.875 kb on - strand, within A4249_RS13700 at 2767.875 kb on - strand, within A4249_RS13700 at 2767.875 kb on - strand, within A4249_RS13700 at 2767.875 kb on - strand, within A4249_RS13700 at 2767.876 kb on + strand, within A4249_RS13700 at 2767.876 kb on + strand, within A4249_RS13700 at 2767.877 kb on - strand, within A4249_RS13700 at 2768.120 kb on + strand, within A4249_RS13700 at 2768.120 kb on + strand, within A4249_RS13700 at 2768.120 kb on + strand, within A4249_RS13700 at 2768.120 kb on + strand, within A4249_RS13700 at 2768.120 kb on + strand, within A4249_RS13700 at 2768.120 kb on + strand, within A4249_RS13700 at 2768.120 kb on + strand, within A4249_RS13700 at 2768.120 kb on + strand, within A4249_RS13700 at 2768.120 kb on + strand, within A4249_RS13700 at 2768.121 kb on - strand, within A4249_RS13700 at 2768.121 kb on - strand, within A4249_RS13700 at 2768.121 kb on - strand, within A4249_RS13700 at 2768.121 kb on - strand, within A4249_RS13700 at 2768.445 kb on - strand, within A4249_RS13700 at 2768.464 kb on + strand, within A4249_RS13700 at 2768.597 kb on + strand, within A4249_RS13700 at 2768.598 kb on - strand, within A4249_RS13700 at 2768.598 kb on - strand, within A4249_RS13700 at 2768.640 kb on + strand, within A4249_RS13700 at 2768.640 kb on + strand, within A4249_RS13700 at 2768.640 kb on + strand, within A4249_RS13700 at 2768.641 kb on - strand, within A4249_RS13700 at 2768.666 kb on + strand, within A4249_RS13700 at 2768.666 kb on + strand, within A4249_RS13700 at 2768.666 kb on + strand, within A4249_RS13700 at 2768.972 kb on + strand at 2768.973 kb on - strand at 2768.978 kb on + strand at 2768.978 kb on + strand at 2769.017 kb on + strand at 2769.017 kb on + strand at 2769.018 kb on - strand at 2769.018 kb on - strand at 2769.018 kb on - strand at 2769.091 kb on - strand at 2769.232 kb on + strand at 2769.333 kb on + strand, within A4249_RS13705 at 2769.334 kb on - strand, within A4249_RS13705 at 2769.392 kb on + strand, within A4249_RS13705 at 2769.466 kb on + strand, within A4249_RS13705 at 2769.467 kb on - strand, within A4249_RS13705 at 2769.467 kb on - strand, within A4249_RS13705 at 2769.467 kb on - strand, within A4249_RS13705 at 2769.658 kb on + strand, within A4249_RS13705 at 2769.659 kb on - strand, within A4249_RS13705 at 2769.659 kb on - strand, within A4249_RS13705 at 2769.872 kb on + strand, within A4249_RS13705 at 2769.872 kb on + strand, within A4249_RS13705 at 2769.872 kb on + strand, within A4249_RS13705 at 2769.873 kb on - strand, within A4249_RS13705 at 2769.873 kb on - strand, within A4249_RS13705 at 2769.873 kb on - strand, within A4249_RS13705 at 2769.873 kb on - strand, within A4249_RS13705 at 2769.873 kb on - strand, within A4249_RS13705 at 2769.905 kb on + strand, within A4249_RS13705 at 2769.905 kb on + strand, within A4249_RS13705
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C) remove 2,767,623 + +0.1 2,767,874 + A4249_RS13700 0.16 +0.1 2,767,874 + A4249_RS13700 0.16 +0.9 2,767,874 + A4249_RS13700 0.16 -0.9 2,767,874 + A4249_RS13700 0.16 -0.3 2,767,874 + A4249_RS13700 0.16 +0.3 2,767,874 + A4249_RS13700 0.16 -1.0 2,767,875 - A4249_RS13700 0.16 +0.7 2,767,875 - A4249_RS13700 0.16 +1.8 2,767,875 - A4249_RS13700 0.16 -2.0 2,767,875 - A4249_RS13700 0.16 +0.7 2,767,876 + A4249_RS13700 0.16 -0.3 2,767,876 + A4249_RS13700 0.16 -0.9 2,767,877 - A4249_RS13700 0.16 -0.9 2,768,120 + A4249_RS13700 0.35 -0.3 2,768,120 + A4249_RS13700 0.35 +1.1 2,768,120 + A4249_RS13700 0.35 +0.4 2,768,120 + A4249_RS13700 0.35 -0.3 2,768,120 + A4249_RS13700 0.35 +0.7 2,768,120 + A4249_RS13700 0.35 -1.5 2,768,120 + A4249_RS13700 0.35 -1.3 2,768,120 + A4249_RS13700 0.35 -0.3 2,768,120 + A4249_RS13700 0.35 -0.6 2,768,121 - A4249_RS13700 0.35 -0.9 2,768,121 - A4249_RS13700 0.35 -0.3 2,768,121 - A4249_RS13700 0.35 -1.5 2,768,121 - A4249_RS13700 0.35 +0.9 2,768,445 - A4249_RS13700 0.59 +0.7 2,768,464 + A4249_RS13700 0.61 +0.9 2,768,597 + A4249_RS13700 0.71 -0.1 2,768,598 - A4249_RS13700 0.71 +0.3 2,768,598 - A4249_RS13700 0.71 -0.4 2,768,640 + A4249_RS13700 0.74 -0.1 2,768,640 + A4249_RS13700 0.74 +0.7 2,768,640 + A4249_RS13700 0.74 -0.2 2,768,641 - A4249_RS13700 0.74 +1.7 2,768,666 + A4249_RS13700 0.76 -0.1 2,768,666 + A4249_RS13700 0.76 -1.7 2,768,666 + A4249_RS13700 0.76 -0.3 2,768,972 + -0.6 2,768,973 - -0.9 2,768,978 + -0.1 2,768,978 + +0.1 2,769,017 + +0.1 2,769,017 + +1.2 2,769,018 - -0.3 2,769,018 - +0.4 2,769,018 - +0.1 2,769,091 - -1.1 2,769,232 + -1.1 2,769,333 + A4249_RS13705 0.14 +0.0 2,769,334 - A4249_RS13705 0.14 -0.7 2,769,392 + A4249_RS13705 0.17 -1.8 2,769,466 + A4249_RS13705 0.21 -0.3 2,769,467 - A4249_RS13705 0.21 -1.5 2,769,467 - A4249_RS13705 0.21 -0.7 2,769,467 - A4249_RS13705 0.21 -0.7 2,769,658 + A4249_RS13705 0.31 +0.7 2,769,659 - A4249_RS13705 0.31 -0.1 2,769,659 - A4249_RS13705 0.31 -2.5 2,769,872 + A4249_RS13705 0.42 -0.7 2,769,872 + A4249_RS13705 0.42 -1.5 2,769,872 + A4249_RS13705 0.42 +0.1 2,769,873 - A4249_RS13705 0.42 +0.3 2,769,873 - A4249_RS13705 0.42 +1.3 2,769,873 - A4249_RS13705 0.42 -0.6 2,769,873 - A4249_RS13705 0.42 +0.1 2,769,873 - A4249_RS13705 0.42 +0.7 2,769,905 + A4249_RS13705 0.44 -0.3 2,769,905 + A4249_RS13705 0.44 -0.9
Or see this region's nucleotide sequence