Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11365

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11355 and A4249_RS11360 are separated by 4 nucleotidesA4249_RS11360 and A4249_RS11365 are separated by 139 nucleotidesA4249_RS11365 and A4249_RS11370 are separated by 61 nucleotidesA4249_RS11370 and A4249_RS11375 are separated by 231 nucleotides A4249_RS11355: A4249_RS11355 - class I SAM-dependent methyltransferase, at 2,287,750 to 2,288,649 _RS11355 A4249_RS11360: A4249_RS11360 - undecaprenyl-diphosphate phosphatase, at 2,288,654 to 2,289,455 _RS11360 A4249_RS11365: A4249_RS11365 - cation diffusion facilitator family transporter, at 2,289,595 to 2,290,581 _RS11365 A4249_RS11370: A4249_RS11370 - glutathione S-transferase family protein, at 2,290,643 to 2,291,329 _RS11370 A4249_RS11375: A4249_RS11375 - tRNA epoxyqueuosine(34) reductase QueG, at 2,291,561 to 2,292,670 _RS11375 Position (kb) 2289 2290 2291Strain fitness (log2 ratio) -1 0 1at 2288.633 kb on + strandat 2288.633 kb on + strandat 2289.512 kb on + strandat 2289.686 kb on + strandat 2289.686 kb on + strandat 2289.686 kb on + strandat 2289.687 kb on - strandat 2289.838 kb on + strand, within A4249_RS11365at 2289.838 kb on + strand, within A4249_RS11365at 2289.839 kb on - strand, within A4249_RS11365at 2289.903 kb on + strand, within A4249_RS11365at 2289.903 kb on + strand, within A4249_RS11365at 2289.904 kb on - strand, within A4249_RS11365at 2289.904 kb on - strand, within A4249_RS11365at 2290.081 kb on + strand, within A4249_RS11365at 2290.605 kb on + strandat 2290.605 kb on + strandat 2290.640 kb on + strandat 2290.640 kb on + strandat 2290.640 kb on + strandat 2291.420 kb on + strandat 2291.420 kb on + strandat 2291.420 kb on + strandat 2291.420 kb on + strandat 2291.420 kb on + strandat 2291.420 kb on + strandat 2291.420 kb on + strandat 2291.420 kb on + strandat 2291.420 kb on + strandat 2291.420 kb on + strandat 2291.421 kb on - strandat 2291.421 kb on - strandat 2291.421 kb on - strandat 2291.421 kb on - strandat 2291.437 kb on + strandat 2291.437 kb on + strandat 2291.437 kb on + strandat 2291.437 kb on + strandat 2291.437 kb on + strandat 2291.438 kb on - strandat 2291.438 kb on - strandat 2291.438 kb on - strandat 2291.438 kb on - strandat 2291.438 kb on - strandat 2291.438 kb on - strandat 2291.438 kb on - strandat 2291.438 kb on - strandat 2291.541 kb on + strandat 2291.541 kb on + strandat 2291.541 kb on + strandat 2291.541 kb on + strandat 2291.541 kb on + strandat 2291.542 kb on - strandat 2291.542 kb on - strandat 2291.542 kb on - strandat 2291.542 kb on - strandat 2291.542 kb on - strandat 2291.548 kb on + strandat 2291.548 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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2,288,633 + +1.1
2,288,633 + +0.3
2,289,512 + -0.1
2,289,686 + -0.4
2,289,686 + -0.1
2,289,686 + -0.9
2,289,687 - +0.3
2,289,838 + A4249_RS11365 0.25 +0.1
2,289,838 + A4249_RS11365 0.25 +1.7
2,289,839 - A4249_RS11365 0.25 -0.0
2,289,903 + A4249_RS11365 0.31 -1.5
2,289,903 + A4249_RS11365 0.31 +1.3
2,289,904 - A4249_RS11365 0.31 +0.8
2,289,904 - A4249_RS11365 0.31 -1.3
2,290,081 + A4249_RS11365 0.49 -0.7
2,290,605 + +0.7
2,290,605 + +1.4
2,290,640 + -0.1
2,290,640 + +0.3
2,290,640 + -0.6
2,291,420 + -0.1
2,291,420 + +0.6
2,291,420 + -0.7
2,291,420 + +0.1
2,291,420 + -0.5
2,291,420 + -0.5
2,291,420 + +0.0
2,291,420 + +0.5
2,291,420 + +0.0
2,291,420 + +0.1
2,291,421 - +0.3
2,291,421 - +1.3
2,291,421 - +0.0
2,291,421 - -0.6
2,291,437 + -0.7
2,291,437 + +0.2
2,291,437 + -1.7
2,291,437 + +0.4
2,291,437 + +0.1
2,291,438 - +0.5
2,291,438 - -0.4
2,291,438 - +0.2
2,291,438 - -0.1
2,291,438 - +0.2
2,291,438 - +1.3
2,291,438 - +1.6
2,291,438 - +0.2
2,291,541 + -0.7
2,291,541 + +0.9
2,291,541 + +0.4
2,291,541 + +0.4
2,291,541 + -0.7
2,291,542 - -0.4
2,291,542 - -0.2
2,291,542 - +0.5
2,291,542 - -0.1
2,291,542 - -0.2
2,291,548 + -0.0
2,291,548 + +0.3

Or see this region's nucleotide sequence