Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11355

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11345 and A4249_RS11350 are separated by 18 nucleotidesA4249_RS11350 and A4249_RS11355 are separated by 32 nucleotidesA4249_RS11355 and A4249_RS11360 are separated by 4 nucleotidesA4249_RS11360 and A4249_RS11365 are separated by 139 nucleotides A4249_RS11345: A4249_RS11345 - type II toxin-antitoxin system prevent-host-death family antitoxin, at 2,286,701 to 2,286,964 _RS11345 A4249_RS11350: A4249_RS11350 - pseudouridine synthase, at 2,286,983 to 2,287,717 _RS11350 A4249_RS11355: A4249_RS11355 - class I SAM-dependent methyltransferase, at 2,287,750 to 2,288,649 _RS11355 A4249_RS11360: A4249_RS11360 - undecaprenyl-diphosphate phosphatase, at 2,288,654 to 2,289,455 _RS11360 A4249_RS11365: A4249_RS11365 - cation diffusion facilitator family transporter, at 2,289,595 to 2,290,581 _RS11365 Position (kb) 2287 2288 2289Strain fitness (log2 ratio) -1 0 1at 2286.958 kb on + strandat 2287.134 kb on + strand, within A4249_RS11350at 2287.443 kb on + strand, within A4249_RS11350at 2287.443 kb on + strand, within A4249_RS11350at 2287.443 kb on + strand, within A4249_RS11350at 2287.443 kb on + strand, within A4249_RS11350at 2287.444 kb on - strand, within A4249_RS11350at 2287.665 kb on + strandat 2287.666 kb on - strandat 2287.775 kb on + strandat 2287.776 kb on - strandat 2287.776 kb on - strandat 2287.835 kb on + strandat 2287.835 kb on + strandat 2287.835 kb on + strandat 2287.835 kb on + strandat 2287.836 kb on - strandat 2288.040 kb on + strand, within A4249_RS11355at 2288.483 kb on + strand, within A4249_RS11355at 2288.483 kb on + strand, within A4249_RS11355at 2288.483 kb on + strand, within A4249_RS11355at 2288.483 kb on + strand, within A4249_RS11355at 2288.483 kb on + strand, within A4249_RS11355at 2288.483 kb on + strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.513 kb on + strand, within A4249_RS11355at 2288.513 kb on + strand, within A4249_RS11355at 2288.513 kb on + strand, within A4249_RS11355at 2288.514 kb on - strand, within A4249_RS11355at 2288.514 kb on - strand, within A4249_RS11355at 2288.514 kb on - strand, within A4249_RS11355at 2288.514 kb on - strand, within A4249_RS11355at 2288.514 kb on - strand, within A4249_RS11355at 2288.633 kb on + strandat 2288.633 kb on + strandat 2289.512 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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2,286,958 + -1.7
2,287,134 + A4249_RS11350 0.21 +0.1
2,287,443 + A4249_RS11350 0.63 -0.5
2,287,443 + A4249_RS11350 0.63 -0.0
2,287,443 + A4249_RS11350 0.63 -0.1
2,287,443 + A4249_RS11350 0.63 +0.5
2,287,444 - A4249_RS11350 0.63 +0.4
2,287,665 + -0.6
2,287,666 - -0.3
2,287,775 + +1.7
2,287,776 - -0.6
2,287,776 - -0.4
2,287,835 + -1.3
2,287,835 + -1.2
2,287,835 + -1.0
2,287,835 + -0.4
2,287,836 - +0.3
2,288,040 + A4249_RS11355 0.32 -0.4
2,288,483 + A4249_RS11355 0.81 -0.5
2,288,483 + A4249_RS11355 0.81 -0.5
2,288,483 + A4249_RS11355 0.81 -0.1
2,288,483 + A4249_RS11355 0.81 +0.7
2,288,483 + A4249_RS11355 0.81 +0.5
2,288,483 + A4249_RS11355 0.81 +0.1
2,288,484 - A4249_RS11355 0.82 +0.4
2,288,484 - A4249_RS11355 0.82 -0.2
2,288,484 - A4249_RS11355 0.82 -0.0
2,288,484 - A4249_RS11355 0.82 -0.4
2,288,484 - A4249_RS11355 0.82 -1.0
2,288,484 - A4249_RS11355 0.82 +0.1
2,288,484 - A4249_RS11355 0.82 +0.2
2,288,484 - A4249_RS11355 0.82 -1.3
2,288,513 + A4249_RS11355 0.85 +0.2
2,288,513 + A4249_RS11355 0.85 +0.1
2,288,513 + A4249_RS11355 0.85 +0.1
2,288,514 - A4249_RS11355 0.85 -1.1
2,288,514 - A4249_RS11355 0.85 +0.5
2,288,514 - A4249_RS11355 0.85 +0.3
2,288,514 - A4249_RS11355 0.85 -0.1
2,288,514 - A4249_RS11355 0.85 +0.0
2,288,633 + +1.1
2,288,633 + +0.3
2,289,512 + -0.1

Or see this region's nucleotide sequence