Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09755

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09750 and A4249_RS09755 are separated by 62 nucleotidesA4249_RS09755 and A4249_RS09760 are separated by 10 nucleotidesA4249_RS09760 and A4249_RS09765 are separated by 4 nucleotides A4249_RS09750: A4249_RS09750 - CHASE3 domain-containing protein, at 1,941,734 to 1,943,260 _RS09750 A4249_RS09755: A4249_RS09755 - flagellar biosynthesis protein FlhA, at 1,943,323 to 1,945,422 _RS09755 A4249_RS09760: A4249_RS09760 - class A beta-lactamase, at 1,945,433 to 1,946,338 _RS09760 A4249_RS09765: A4249_RS09765 - sigma-54 dependent transcriptional regulator, at 1,946,343 to 1,947,755 _RS09765 Position (kb) 1943 1944 1945 1946Strain fitness (log2 ratio) -2 -1 0 1at 1942.374 kb on + strand, within A4249_RS09750at 1942.374 kb on + strand, within A4249_RS09750at 1942.374 kb on + strand, within A4249_RS09750at 1942.374 kb on + strand, within A4249_RS09750at 1942.374 kb on + strand, within A4249_RS09750at 1942.375 kb on - strand, within A4249_RS09750at 1942.375 kb on - strand, within A4249_RS09750at 1942.375 kb on - strand, within A4249_RS09750at 1942.422 kb on + strand, within A4249_RS09750at 1942.422 kb on + strand, within A4249_RS09750at 1942.422 kb on + strand, within A4249_RS09750at 1942.422 kb on + strand, within A4249_RS09750at 1942.422 kb on + strand, within A4249_RS09750at 1942.423 kb on - strand, within A4249_RS09750at 1942.423 kb on - strand, within A4249_RS09750at 1942.423 kb on - strand, within A4249_RS09750at 1942.423 kb on - strand, within A4249_RS09750at 1942.423 kb on - strand, within A4249_RS09750at 1942.468 kb on + strand, within A4249_RS09750at 1942.468 kb on + strand, within A4249_RS09750at 1942.469 kb on - strand, within A4249_RS09750at 1942.469 kb on - strand, within A4249_RS09750at 1942.469 kb on - strand, within A4249_RS09750at 1942.469 kb on - strand, within A4249_RS09750at 1942.469 kb on - strand, within A4249_RS09750at 1942.470 kb on + strand, within A4249_RS09750at 1942.470 kb on + strand, within A4249_RS09750at 1942.470 kb on + strand, within A4249_RS09750at 1942.470 kb on + strand, within A4249_RS09750at 1942.471 kb on - strand, within A4249_RS09750at 1942.471 kb on - strand, within A4249_RS09750at 1942.471 kb on - strand, within A4249_RS09750at 1942.471 kb on - strand, within A4249_RS09750at 1942.471 kb on - strand, within A4249_RS09750at 1942.471 kb on - strand, within A4249_RS09750at 1942.471 kb on - strand, within A4249_RS09750at 1942.593 kb on + strand, within A4249_RS09750at 1942.593 kb on + strand, within A4249_RS09750at 1942.593 kb on + strand, within A4249_RS09750at 1942.593 kb on + strand, within A4249_RS09750at 1942.593 kb on + strand, within A4249_RS09750at 1942.593 kb on + strand, within A4249_RS09750at 1942.594 kb on - strand, within A4249_RS09750at 1942.594 kb on - strand, within A4249_RS09750at 1942.767 kb on + strand, within A4249_RS09750at 1942.767 kb on + strand, within A4249_RS09750at 1942.767 kb on + strand, within A4249_RS09750at 1942.767 kb on + strand, within A4249_RS09750at 1942.767 kb on + strand, within A4249_RS09750at 1942.767 kb on + strand, within A4249_RS09750at 1942.767 kb on + strand, within A4249_RS09750at 1942.768 kb on - strand, within A4249_RS09750at 1942.768 kb on - strand, within A4249_RS09750at 1942.768 kb on - strand, within A4249_RS09750at 1942.894 kb on + strand, within A4249_RS09750at 1942.974 kb on + strand, within A4249_RS09750at 1942.974 kb on + strand, within A4249_RS09750at 1943.056 kb on + strand, within A4249_RS09750at 1943.056 kb on + strand, within A4249_RS09750at 1943.209 kb on + strandat 1943.209 kb on + strandat 1943.209 kb on + strandat 1943.210 kb on - strandat 1943.210 kb on - strandat 1943.210 kb on - strandat 1943.275 kb on - strandat 1943.424 kb on - strandat 1943.891 kb on + strand, within A4249_RS09755at 1943.892 kb on - strand, within A4249_RS09755at 1943.892 kb on - strand, within A4249_RS09755at 1943.892 kb on - strand, within A4249_RS09755at 1943.910 kb on + strand, within A4249_RS09755at 1943.910 kb on + strand, within A4249_RS09755at 1943.910 kb on + strand, within A4249_RS09755at 1943.910 kb on + strand, within A4249_RS09755at 1943.911 kb on - strand, within A4249_RS09755at 1943.911 kb on - strand, within A4249_RS09755at 1943.911 kb on - strand, within A4249_RS09755at 1943.911 kb on - strand, within A4249_RS09755at 1943.911 kb on - strand, within A4249_RS09755at 1943.911 kb on - strand, within A4249_RS09755at 1943.911 kb on - strand, within A4249_RS09755at 1943.913 kb on + strand, within A4249_RS09755at 1943.913 kb on + strand, within A4249_RS09755at 1943.913 kb on + strand, within A4249_RS09755at 1943.913 kb on + strand, within A4249_RS09755at 1943.913 kb on + strand, within A4249_RS09755at 1943.914 kb on - strand, within A4249_RS09755at 1943.914 kb on - strand, within A4249_RS09755at 1943.914 kb on - strand, within A4249_RS09755at 1943.914 kb on - strand, within A4249_RS09755at 1943.914 kb on - strand, within A4249_RS09755at 1943.914 kb on - strand, within A4249_RS09755at 1943.914 kb on - strand, within A4249_RS09755at 1943.914 kb on - strand, within A4249_RS09755at 1943.970 kb on + strand, within A4249_RS09755at 1943.970 kb on + strand, within A4249_RS09755at 1943.971 kb on - strand, within A4249_RS09755at 1943.971 kb on - strand, within A4249_RS09755at 1943.971 kb on - strand, within A4249_RS09755at 1943.971 kb on - strand, within A4249_RS09755at 1943.971 kb on - strand, within A4249_RS09755at 1944.048 kb on + strand, within A4249_RS09755at 1944.049 kb on - strand, within A4249_RS09755at 1944.049 kb on - strand, within A4249_RS09755at 1944.049 kb on - strand, within A4249_RS09755at 1944.155 kb on + strand, within A4249_RS09755at 1944.215 kb on + strand, within A4249_RS09755at 1944.215 kb on + strand, within A4249_RS09755at 1944.619 kb on + strand, within A4249_RS09755at 1944.695 kb on + strand, within A4249_RS09755at 1944.695 kb on + strand, within A4249_RS09755at 1944.695 kb on + strand, within A4249_RS09755at 1944.695 kb on + strand, within A4249_RS09755at 1944.696 kb on - strand, within A4249_RS09755at 1944.696 kb on - strand, within A4249_RS09755at 1944.696 kb on - strand, within A4249_RS09755at 1944.696 kb on - strand, within A4249_RS09755at 1944.696 kb on - strand, within A4249_RS09755at 1944.696 kb on - strand, within A4249_RS09755at 1944.696 kb on - strand, within A4249_RS09755at 1944.696 kb on - strand, within A4249_RS09755at 1944.696 kb on - strand, within A4249_RS09755at 1944.696 kb on - strand, within A4249_RS09755at 1944.749 kb on - strand, within A4249_RS09755at 1944.749 kb on - strand, within A4249_RS09755at 1945.377 kb on - strandat 1945.432 kb on - strandat 1945.524 kb on + strand, within A4249_RS09760at 1945.524 kb on + strand, within A4249_RS09760at 1945.524 kb on + strand, within A4249_RS09760at 1945.525 kb on - strand, within A4249_RS09760at 1945.525 kb on - strand, within A4249_RS09760at 1945.525 kb on - strand, within A4249_RS09760at 1945.527 kb on + strand, within A4249_RS09760at 1945.527 kb on + strand, within A4249_RS09760at 1945.527 kb on + strand, within A4249_RS09760at 1945.527 kb on + strand, within A4249_RS09760at 1945.528 kb on - strand, within A4249_RS09760at 1945.528 kb on - strand, within A4249_RS09760at 1945.563 kb on + strand, within A4249_RS09760at 1945.564 kb on - strand, within A4249_RS09760at 1945.594 kb on - strand, within A4249_RS09760at 1945.648 kb on + strand, within A4249_RS09760at 1945.649 kb on - strand, within A4249_RS09760at 1945.649 kb on - strand, within A4249_RS09760at 1945.649 kb on - strand, within A4249_RS09760at 1945.673 kb on - strand, within A4249_RS09760at 1945.694 kb on + strand, within A4249_RS09760at 1945.780 kb on + strand, within A4249_RS09760at 1945.780 kb on + strand, within A4249_RS09760at 1945.780 kb on + strand, within A4249_RS09760at 1945.781 kb on - strand, within A4249_RS09760at 1945.781 kb on - strand, within A4249_RS09760at 1945.781 kb on - strand, within A4249_RS09760at 1945.781 kb on - strand, within A4249_RS09760at 1945.857 kb on + strand, within A4249_RS09760at 1945.857 kb on + strand, within A4249_RS09760at 1945.858 kb on - strand, within A4249_RS09760at 1945.858 kb on - strand, within A4249_RS09760at 1945.858 kb on - strand, within A4249_RS09760at 1945.858 kb on - strand, within A4249_RS09760at 1945.859 kb on + strand, within A4249_RS09760at 1946.088 kb on + strand, within A4249_RS09760at 1946.089 kb on - strand, within A4249_RS09760at 1946.089 kb on - strand, within A4249_RS09760at 1946.089 kb on - strand, within A4249_RS09760at 1946.109 kb on + strand, within A4249_RS09760at 1946.109 kb on + strand, within A4249_RS09760at 1946.110 kb on - strand, within A4249_RS09760at 1946.110 kb on - strand, within A4249_RS09760at 1946.110 kb on - strand, within A4249_RS09760at 1946.110 kb on - strand, within A4249_RS09760at 1946.143 kb on + strand, within A4249_RS09760at 1946.143 kb on + strand, within A4249_RS09760at 1946.143 kb on + strand, within A4249_RS09760at 1946.144 kb on - strand, within A4249_RS09760at 1946.144 kb on - strand, within A4249_RS09760at 1946.144 kb on - strand, within A4249_RS09760at 1946.144 kb on - strand, within A4249_RS09760at 1946.410 kb on + strandat 1946.410 kb on + strandat 1946.410 kb on + strandat 1946.411 kb on - strandat 1946.411 kb on - strandat 1946.411 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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1,942,374 + A4249_RS09750 0.42 +0.1
1,942,374 + A4249_RS09750 0.42 +0.2
1,942,374 + A4249_RS09750 0.42 +0.2
1,942,374 + A4249_RS09750 0.42 -0.1
1,942,374 + A4249_RS09750 0.42 -1.1
1,942,375 - A4249_RS09750 0.42 +0.0
1,942,375 - A4249_RS09750 0.42 +0.1
1,942,375 - A4249_RS09750 0.42 -0.0
1,942,422 + A4249_RS09750 0.45 -0.3
1,942,422 + A4249_RS09750 0.45 -0.1
1,942,422 + A4249_RS09750 0.45 -0.5
1,942,422 + A4249_RS09750 0.45 -0.0
1,942,422 + A4249_RS09750 0.45 -0.1
1,942,423 - A4249_RS09750 0.45 -0.4
1,942,423 - A4249_RS09750 0.45 +0.4
1,942,423 - A4249_RS09750 0.45 -0.4
1,942,423 - A4249_RS09750 0.45 +0.3
1,942,423 - A4249_RS09750 0.45 -0.4
1,942,468 + A4249_RS09750 0.48 -0.6
1,942,468 + A4249_RS09750 0.48 +0.5
1,942,469 - A4249_RS09750 0.48 -0.3
1,942,469 - A4249_RS09750 0.48 -0.2
1,942,469 - A4249_RS09750 0.48 -0.1
1,942,469 - A4249_RS09750 0.48 -0.9
1,942,469 - A4249_RS09750 0.48 -0.2
1,942,470 + A4249_RS09750 0.48 +0.2
1,942,470 + A4249_RS09750 0.48 -0.2
1,942,470 + A4249_RS09750 0.48 -0.8
1,942,470 + A4249_RS09750 0.48 -0.4
1,942,471 - A4249_RS09750 0.48 -0.1
1,942,471 - A4249_RS09750 0.48 -0.2
1,942,471 - A4249_RS09750 0.48 -0.2
1,942,471 - A4249_RS09750 0.48 +0.0
1,942,471 - A4249_RS09750 0.48 -0.6
1,942,471 - A4249_RS09750 0.48 -1.1
1,942,471 - A4249_RS09750 0.48 +0.0
1,942,593 + A4249_RS09750 0.56 +0.0
1,942,593 + A4249_RS09750 0.56 +0.8
1,942,593 + A4249_RS09750 0.56 -0.1
1,942,593 + A4249_RS09750 0.56 -0.4
1,942,593 + A4249_RS09750 0.56 -0.1
1,942,593 + A4249_RS09750 0.56 -0.2
1,942,594 - A4249_RS09750 0.56 +0.2
1,942,594 - A4249_RS09750 0.56 -1.8
1,942,767 + A4249_RS09750 0.68 +0.2
1,942,767 + A4249_RS09750 0.68 -0.7
1,942,767 + A4249_RS09750 0.68 -0.3
1,942,767 + A4249_RS09750 0.68 +0.1
1,942,767 + A4249_RS09750 0.68 -0.3
1,942,767 + A4249_RS09750 0.68 -0.6
1,942,767 + A4249_RS09750 0.68 +0.0
1,942,768 - A4249_RS09750 0.68 -0.5
1,942,768 - A4249_RS09750 0.68 -0.9
1,942,768 - A4249_RS09750 0.68 -0.5
1,942,894 + A4249_RS09750 0.76 +0.0
1,942,974 + A4249_RS09750 0.81 -0.4
1,942,974 + A4249_RS09750 0.81 -0.0
1,943,056 + A4249_RS09750 0.87 -0.2
1,943,056 + A4249_RS09750 0.87 -0.4
1,943,209 + -0.6
1,943,209 + -1.0
1,943,209 + -0.5
1,943,210 - -0.1
1,943,210 - +0.1
1,943,210 - -0.1
1,943,275 - +0.7
1,943,424 - +0.4
1,943,891 + A4249_RS09755 0.27 +0.7
1,943,892 - A4249_RS09755 0.27 +0.3
1,943,892 - A4249_RS09755 0.27 -0.5
1,943,892 - A4249_RS09755 0.27 +0.9
1,943,910 + A4249_RS09755 0.28 +1.4
1,943,910 + A4249_RS09755 0.28 +0.6
1,943,910 + A4249_RS09755 0.28 +1.5
1,943,910 + A4249_RS09755 0.28 +0.8
1,943,911 - A4249_RS09755 0.28 +0.1
1,943,911 - A4249_RS09755 0.28 -1.1
1,943,911 - A4249_RS09755 0.28 -0.7
1,943,911 - A4249_RS09755 0.28 +0.2
1,943,911 - A4249_RS09755 0.28 -0.5
1,943,911 - A4249_RS09755 0.28 +0.4
1,943,911 - A4249_RS09755 0.28 +1.7
1,943,913 + A4249_RS09755 0.28 +0.1
1,943,913 + A4249_RS09755 0.28 +0.4
1,943,913 + A4249_RS09755 0.28 -1.2
1,943,913 + A4249_RS09755 0.28 +0.7
1,943,913 + A4249_RS09755 0.28 +0.1
1,943,914 - A4249_RS09755 0.28 +0.9
1,943,914 - A4249_RS09755 0.28 +0.3
1,943,914 - A4249_RS09755 0.28 +0.1
1,943,914 - A4249_RS09755 0.28 +0.7
1,943,914 - A4249_RS09755 0.28 -0.9
1,943,914 - A4249_RS09755 0.28 -0.0
1,943,914 - A4249_RS09755 0.28 +1.3
1,943,914 - A4249_RS09755 0.28 +0.3
1,943,970 + A4249_RS09755 0.31 +0.3
1,943,970 + A4249_RS09755 0.31 -0.7
1,943,971 - A4249_RS09755 0.31 +1.4
1,943,971 - A4249_RS09755 0.31 +0.7
1,943,971 - A4249_RS09755 0.31 +1.7
1,943,971 - A4249_RS09755 0.31 +0.7
1,943,971 - A4249_RS09755 0.31 -0.0
1,944,048 + A4249_RS09755 0.35 +0.7
1,944,049 - A4249_RS09755 0.35 +0.4
1,944,049 - A4249_RS09755 0.35 -1.2
1,944,049 - A4249_RS09755 0.35 -0.8
1,944,155 + A4249_RS09755 0.40 -0.4
1,944,215 + A4249_RS09755 0.42 -0.9
1,944,215 + A4249_RS09755 0.42 -0.3
1,944,619 + A4249_RS09755 0.62 -0.4
1,944,695 + A4249_RS09755 0.65 +1.3
1,944,695 + A4249_RS09755 0.65 -0.3
1,944,695 + A4249_RS09755 0.65 -0.6
1,944,695 + A4249_RS09755 0.65 +0.3
1,944,696 - A4249_RS09755 0.65 -0.1
1,944,696 - A4249_RS09755 0.65 -0.2
1,944,696 - A4249_RS09755 0.65 +1.1
1,944,696 - A4249_RS09755 0.65 +0.0
1,944,696 - A4249_RS09755 0.65 +1.0
1,944,696 - A4249_RS09755 0.65 +0.5
1,944,696 - A4249_RS09755 0.65 -0.7
1,944,696 - A4249_RS09755 0.65 +0.4
1,944,696 - A4249_RS09755 0.65 -1.1
1,944,696 - A4249_RS09755 0.65 +0.9
1,944,749 - A4249_RS09755 0.68 +1.3
1,944,749 - A4249_RS09755 0.68 +1.3
1,945,377 - +1.3
1,945,432 - +0.6
1,945,524 + A4249_RS09760 0.10 +0.2
1,945,524 + A4249_RS09760 0.10 +0.8
1,945,524 + A4249_RS09760 0.10 -0.5
1,945,525 - A4249_RS09760 0.10 +0.4
1,945,525 - A4249_RS09760 0.10 +0.9
1,945,525 - A4249_RS09760 0.10 -1.4
1,945,527 + A4249_RS09760 0.10 +0.3
1,945,527 + A4249_RS09760 0.10 -0.9
1,945,527 + A4249_RS09760 0.10 +0.7
1,945,527 + A4249_RS09760 0.10 +0.9
1,945,528 - A4249_RS09760 0.10 -0.2
1,945,528 - A4249_RS09760 0.10 +0.6
1,945,563 + A4249_RS09760 0.14 -0.4
1,945,564 - A4249_RS09760 0.14 +1.2
1,945,594 - A4249_RS09760 0.18 +0.0
1,945,648 + A4249_RS09760 0.24 +0.4
1,945,649 - A4249_RS09760 0.24 -0.7
1,945,649 - A4249_RS09760 0.24 -0.6
1,945,649 - A4249_RS09760 0.24 +1.1
1,945,673 - A4249_RS09760 0.26 -1.0
1,945,694 + A4249_RS09760 0.29 +1.1
1,945,780 + A4249_RS09760 0.38 +0.5
1,945,780 + A4249_RS09760 0.38 +0.3
1,945,780 + A4249_RS09760 0.38 +0.4
1,945,781 - A4249_RS09760 0.38 +0.5
1,945,781 - A4249_RS09760 0.38 -0.5
1,945,781 - A4249_RS09760 0.38 -0.4
1,945,781 - A4249_RS09760 0.38 +1.0
1,945,857 + A4249_RS09760 0.47 -0.4
1,945,857 + A4249_RS09760 0.47 +0.4
1,945,858 - A4249_RS09760 0.47 +0.0
1,945,858 - A4249_RS09760 0.47 +0.4
1,945,858 - A4249_RS09760 0.47 -0.5
1,945,858 - A4249_RS09760 0.47 +0.7
1,945,859 + A4249_RS09760 0.47 +0.9
1,946,088 + A4249_RS09760 0.72 -0.3
1,946,089 - A4249_RS09760 0.72 +0.7
1,946,089 - A4249_RS09760 0.72 +0.1
1,946,089 - A4249_RS09760 0.72 -0.4
1,946,109 + A4249_RS09760 0.75 +0.9
1,946,109 + A4249_RS09760 0.75 +0.6
1,946,110 - A4249_RS09760 0.75 +0.1
1,946,110 - A4249_RS09760 0.75 +0.1
1,946,110 - A4249_RS09760 0.75 -0.3
1,946,110 - A4249_RS09760 0.75 +1.7
1,946,143 + A4249_RS09760 0.78 -0.1
1,946,143 + A4249_RS09760 0.78 -0.6
1,946,143 + A4249_RS09760 0.78 -0.7
1,946,144 - A4249_RS09760 0.78 +0.2
1,946,144 - A4249_RS09760 0.78 -0.0
1,946,144 - A4249_RS09760 0.78 -0.3
1,946,144 - A4249_RS09760 0.78 -0.3
1,946,410 + -1.8
1,946,410 + -1.4
1,946,410 + +1.2
1,946,411 - +1.7
1,946,411 - -0.1
1,946,411 - +0.5

Or see this region's nucleotide sequence