Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08470

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08460 and A4249_RS08465 are separated by 134 nucleotidesA4249_RS08465 and A4249_RS08470 are separated by 48 nucleotidesA4249_RS08470 and A4249_RS08475 are separated by 44 nucleotidesA4249_RS08475 and A4249_RS08480 are separated by 219 nucleotides A4249_RS08460: A4249_RS08460 - protein-L-isoaspartate O-methyltransferase, at 1,699,010 to 1,699,639 _RS08460 A4249_RS08465: A4249_RS08465 - tRNA-Cys, at 1,699,774 to 1,699,847 _RS08465 A4249_RS08470: A4249_RS08470 - RNA methyltransferase, at 1,699,896 to 1,700,729 _RS08470 A4249_RS08475: A4249_RS08475 - tRNA-Asn, at 1,700,774 to 1,700,848 _RS08475 A4249_RS08480: A4249_RS08480 - monovalent cation/H+ antiporter subunit A, at 1,701,068 to 1,703,986 _RS08480 Position (kb) 1699 1700 1701Strain fitness (log2 ratio) -2 -1 0 1 2at 1698.921 kb on + strandat 1698.921 kb on + strandat 1698.921 kb on + strandat 1698.921 kb on + strandat 1698.922 kb on - strandat 1698.922 kb on - strandat 1698.922 kb on - strandat 1698.922 kb on - strandat 1698.952 kb on + strandat 1698.952 kb on + strandat 1698.953 kb on - strandat 1698.953 kb on - strandat 1698.953 kb on - strandat 1698.953 kb on - strandat 1699.011 kb on + strandat 1699.011 kb on + strandat 1699.012 kb on - strandat 1699.012 kb on - strandat 1699.012 kb on - strandat 1699.012 kb on - strandat 1699.012 kb on - strandat 1699.012 kb on - strandat 1699.012 kb on - strandat 1699.012 kb on - strandat 1699.643 kb on + strandat 1699.643 kb on + strandat 1699.644 kb on - strandat 1699.644 kb on - strandat 1699.644 kb on - strandat 1699.644 kb on - strandat 1699.687 kb on - strandat 1699.688 kb on + strandat 1699.688 kb on + strandat 1699.688 kb on + strandat 1699.688 kb on + strandat 1699.688 kb on + strandat 1699.688 kb on + strandat 1699.688 kb on + strandat 1699.689 kb on - strandat 1699.689 kb on - strandat 1699.689 kb on - strandat 1699.689 kb on - strandat 1699.689 kb on - strandat 1699.689 kb on - strandat 1699.689 kb on - strandat 1699.689 kb on - strandat 1699.689 kb on - strandat 1699.689 kb on - strandat 1699.689 kb on - strandat 1699.689 kb on - strandat 1699.986 kb on - strand, within A4249_RS08470at 1699.986 kb on - strand, within A4249_RS08470at 1700.081 kb on - strand, within A4249_RS08470at 1700.081 kb on - strand, within A4249_RS08470at 1700.228 kb on - strand, within A4249_RS08470at 1700.228 kb on - strand, within A4249_RS08470at 1700.228 kb on - strand, within A4249_RS08470at 1700.473 kb on + strand, within A4249_RS08470at 1700.473 kb on + strand, within A4249_RS08470at 1700.473 kb on + strand, within A4249_RS08470at 1700.473 kb on + strand, within A4249_RS08470at 1700.473 kb on + strand, within A4249_RS08470at 1700.474 kb on - strand, within A4249_RS08470at 1700.474 kb on - strand, within A4249_RS08470at 1700.474 kb on - strand, within A4249_RS08470at 1700.474 kb on - strand, within A4249_RS08470at 1700.474 kb on - strand, within A4249_RS08470at 1700.474 kb on - strand, within A4249_RS08470at 1700.474 kb on - strand, within A4249_RS08470at 1700.474 kb on - strand, within A4249_RS08470at 1700.474 kb on - strand, within A4249_RS08470at 1700.659 kb on + strandat 1700.659 kb on + strandat 1700.693 kb on + strandat 1700.881 kb on + strandat 1700.882 kb on - strandat 1700.882 kb on - strandat 1700.882 kb on - strandat 1700.899 kb on + strandat 1700.903 kb on - strandat 1700.903 kb on - strandat 1700.990 kb on + strandat 1700.990 kb on + strandat 1700.991 kb on - strandat 1700.991 kb on - strandat 1701.033 kb on + strandat 1701.033 kb on + strandat 1701.033 kb on + strandat 1701.034 kb on - strandat 1701.034 kb on - strandat 1701.034 kb on - strandat 1701.034 kb on - strandat 1701.217 kb on - strandat 1701.362 kb on + strand, within A4249_RS08480at 1701.362 kb on + strand, within A4249_RS08480at 1701.362 kb on + strand, within A4249_RS08480at 1701.362 kb on + strand, within A4249_RS08480at 1701.362 kb on + strand, within A4249_RS08480at 1701.362 kb on + strand, within A4249_RS08480at 1701.363 kb on - strand, within A4249_RS08480at 1701.363 kb on - strand, within A4249_RS08480at 1701.363 kb on - strand, within A4249_RS08480at 1701.363 kb on - strand, within A4249_RS08480at 1701.363 kb on - strand, within A4249_RS08480at 1701.371 kb on + strand, within A4249_RS08480at 1701.371 kb on + strand, within A4249_RS08480at 1701.374 kb on + strand, within A4249_RS08480at 1701.374 kb on + strand, within A4249_RS08480at 1701.374 kb on + strand, within A4249_RS08480at 1701.374 kb on + strand, within A4249_RS08480at 1701.374 kb on + strand, within A4249_RS08480at 1701.374 kb on + strand, within A4249_RS08480at 1701.374 kb on + strand, within A4249_RS08480at 1701.374 kb on + strand, within A4249_RS08480at 1701.374 kb on + strand, within A4249_RS08480at 1701.374 kb on + strand, within A4249_RS08480at 1701.374 kb on + strand, within A4249_RS08480at 1701.374 kb on + strand, within A4249_RS08480at 1701.374 kb on + strand, within A4249_RS08480at 1701.374 kb on + strand, within A4249_RS08480at 1701.374 kb on + strand, within A4249_RS08480at 1701.374 kb on + strand, within A4249_RS08480at 1701.374 kb on + strand, within A4249_RS08480at 1701.375 kb on - strand, within A4249_RS08480at 1701.375 kb on - strand, within A4249_RS08480at 1701.375 kb on - strand, within A4249_RS08480at 1701.375 kb on - strand, within A4249_RS08480at 1701.375 kb on - strand, within A4249_RS08480at 1701.375 kb on - strand, within A4249_RS08480at 1701.375 kb on - strand, within A4249_RS08480at 1701.375 kb on - strand, within A4249_RS08480at 1701.375 kb on - strand, within A4249_RS08480at 1701.375 kb on - strand, within A4249_RS08480at 1701.375 kb on - strand, within A4249_RS08480at 1701.375 kb on - strand, within A4249_RS08480at 1701.375 kb on - strand, within A4249_RS08480at 1701.375 kb on - strand, within A4249_RS08480at 1701.375 kb on - strand, within A4249_RS08480at 1701.480 kb on + strand, within A4249_RS08480at 1701.480 kb on + strand, within A4249_RS08480at 1701.481 kb on - strand, within A4249_RS08480at 1701.481 kb on - strand, within A4249_RS08480at 1701.481 kb on - strand, within A4249_RS08480at 1701.481 kb on - strand, within A4249_RS08480at 1701.525 kb on - strand, within A4249_RS08480at 1701.525 kb on - strand, within A4249_RS08480at 1701.641 kb on + strand, within A4249_RS08480at 1701.641 kb on + strand, within A4249_RS08480at 1701.641 kb on + strand, within A4249_RS08480at 1701.642 kb on - strand, within A4249_RS08480at 1701.642 kb on - strand, within A4249_RS08480at 1701.642 kb on - strand, within A4249_RS08480at 1701.642 kb on - strand, within A4249_RS08480at 1701.642 kb on - strand, within A4249_RS08480at 1701.642 kb on - strand, within A4249_RS08480at 1701.642 kb on - strand, within A4249_RS08480at 1701.695 kb on + strand, within A4249_RS08480at 1701.695 kb on + strand, within A4249_RS08480at 1701.696 kb on - strand, within A4249_RS08480at 1701.696 kb on - strand, within A4249_RS08480

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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1,698,921 + +0.4
1,698,921 + +0.0
1,698,921 + -0.3
1,698,921 + +0.1
1,698,922 - +0.0
1,698,922 - -0.2
1,698,922 - -0.5
1,698,922 - +0.2
1,698,952 + -0.2
1,698,952 + +0.3
1,698,953 - -0.4
1,698,953 - +0.4
1,698,953 - -0.0
1,698,953 - -0.5
1,699,011 + -0.4
1,699,011 + -0.2
1,699,012 - +0.5
1,699,012 - +0.9
1,699,012 - -0.3
1,699,012 - +0.3
1,699,012 - -1.0
1,699,012 - +0.2
1,699,012 - +0.2
1,699,012 - -0.3
1,699,643 + +0.1
1,699,643 + +0.1
1,699,644 - -0.0
1,699,644 - -0.2
1,699,644 - +0.1
1,699,644 - +0.3
1,699,687 - +0.3
1,699,688 + -1.5
1,699,688 + +0.5
1,699,688 + -0.4
1,699,688 + +1.9
1,699,688 + +1.0
1,699,688 + +0.3
1,699,688 + -0.4
1,699,689 - -0.4
1,699,689 - -0.2
1,699,689 - -0.0
1,699,689 - -0.4
1,699,689 - +0.2
1,699,689 - +0.6
1,699,689 - -0.1
1,699,689 - +0.5
1,699,689 - +0.3
1,699,689 - -0.4
1,699,689 - +0.2
1,699,689 - +0.3
1,699,986 - A4249_RS08470 0.11 +0.1
1,699,986 - A4249_RS08470 0.11 +0.3
1,700,081 - A4249_RS08470 0.22 -0.4
1,700,081 - A4249_RS08470 0.22 +1.3
1,700,228 - A4249_RS08470 0.40 -1.3
1,700,228 - A4249_RS08470 0.40 -0.4
1,700,228 - A4249_RS08470 0.40 +0.1
1,700,473 + A4249_RS08470 0.69 +1.3
1,700,473 + A4249_RS08470 0.69 +0.4
1,700,473 + A4249_RS08470 0.69 +0.1
1,700,473 + A4249_RS08470 0.69 -1.1
1,700,473 + A4249_RS08470 0.69 -1.7
1,700,474 - A4249_RS08470 0.69 +0.7
1,700,474 - A4249_RS08470 0.69 -0.2
1,700,474 - A4249_RS08470 0.69 +0.8
1,700,474 - A4249_RS08470 0.69 +0.2
1,700,474 - A4249_RS08470 0.69 -0.0
1,700,474 - A4249_RS08470 0.69 -0.3
1,700,474 - A4249_RS08470 0.69 -0.3
1,700,474 - A4249_RS08470 0.69 -0.7
1,700,474 - A4249_RS08470 0.69 -0.2
1,700,659 + -0.2
1,700,659 + -1.9
1,700,693 + -0.1
1,700,881 + +0.1
1,700,882 - -1.5
1,700,882 - -0.0
1,700,882 - -1.8
1,700,899 + -0.3
1,700,903 - +0.5
1,700,903 - +0.6
1,700,990 + -0.2
1,700,990 + +0.7
1,700,991 - +0.2
1,700,991 - +0.3
1,701,033 + +1.5
1,701,033 + +0.8
1,701,033 + -0.4
1,701,034 - +0.3
1,701,034 - -0.7
1,701,034 - +0.0
1,701,034 - -0.3
1,701,217 - +0.3
1,701,362 + A4249_RS08480 0.10 -0.6
1,701,362 + A4249_RS08480 0.10 +0.2
1,701,362 + A4249_RS08480 0.10 -0.3
1,701,362 + A4249_RS08480 0.10 -0.6
1,701,362 + A4249_RS08480 0.10 +0.6
1,701,362 + A4249_RS08480 0.10 +1.0
1,701,363 - A4249_RS08480 0.10 +1.3
1,701,363 - A4249_RS08480 0.10 -0.0
1,701,363 - A4249_RS08480 0.10 -0.4
1,701,363 - A4249_RS08480 0.10 +0.2
1,701,363 - A4249_RS08480 0.10 -0.2
1,701,371 + A4249_RS08480 0.10 -0.5
1,701,371 + A4249_RS08480 0.10 +1.0
1,701,374 + A4249_RS08480 0.10 -0.4
1,701,374 + A4249_RS08480 0.10 +0.6
1,701,374 + A4249_RS08480 0.10 +0.8
1,701,374 + A4249_RS08480 0.10 -1.1
1,701,374 + A4249_RS08480 0.10 +0.3
1,701,374 + A4249_RS08480 0.10 +0.2
1,701,374 + A4249_RS08480 0.10 +0.0
1,701,374 + A4249_RS08480 0.10 -0.1
1,701,374 + A4249_RS08480 0.10 -0.0
1,701,374 + A4249_RS08480 0.10 +0.1
1,701,374 + A4249_RS08480 0.10 +0.5
1,701,374 + A4249_RS08480 0.10 -0.4
1,701,374 + A4249_RS08480 0.10 +0.4
1,701,374 + A4249_RS08480 0.10 +0.8
1,701,374 + A4249_RS08480 0.10 -2.3
1,701,374 + A4249_RS08480 0.10 -0.0
1,701,374 + A4249_RS08480 0.10 -0.2
1,701,375 - A4249_RS08480 0.11 -0.2
1,701,375 - A4249_RS08480 0.11 +0.6
1,701,375 - A4249_RS08480 0.11 +0.1
1,701,375 - A4249_RS08480 0.11 +0.6
1,701,375 - A4249_RS08480 0.11 +0.7
1,701,375 - A4249_RS08480 0.11 +0.2
1,701,375 - A4249_RS08480 0.11 -0.4
1,701,375 - A4249_RS08480 0.11 -0.1
1,701,375 - A4249_RS08480 0.11 +0.4
1,701,375 - A4249_RS08480 0.11 -0.5
1,701,375 - A4249_RS08480 0.11 -2.3
1,701,375 - A4249_RS08480 0.11 +0.3
1,701,375 - A4249_RS08480 0.11 -0.6
1,701,375 - A4249_RS08480 0.11 -0.3
1,701,375 - A4249_RS08480 0.11 +0.1
1,701,480 + A4249_RS08480 0.14 -0.2
1,701,480 + A4249_RS08480 0.14 +0.1
1,701,481 - A4249_RS08480 0.14 -0.4
1,701,481 - A4249_RS08480 0.14 -0.4
1,701,481 - A4249_RS08480 0.14 -1.2
1,701,481 - A4249_RS08480 0.14 -0.4
1,701,525 - A4249_RS08480 0.16 +1.0
1,701,525 - A4249_RS08480 0.16 +0.4
1,701,641 + A4249_RS08480 0.20 -0.0
1,701,641 + A4249_RS08480 0.20 -0.7
1,701,641 + A4249_RS08480 0.20 +0.3
1,701,642 - A4249_RS08480 0.20 -0.7
1,701,642 - A4249_RS08480 0.20 -1.5
1,701,642 - A4249_RS08480 0.20 -0.5
1,701,642 - A4249_RS08480 0.20 -0.3
1,701,642 - A4249_RS08480 0.20 -0.4
1,701,642 - A4249_RS08480 0.20 +0.6
1,701,642 - A4249_RS08480 0.20 +0.4
1,701,695 + A4249_RS08480 0.21 +0.7
1,701,695 + A4249_RS08480 0.21 +0.8
1,701,696 - A4249_RS08480 0.22 -0.4
1,701,696 - A4249_RS08480 0.22 +1.1

Or see this region's nucleotide sequence