Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS07135

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS07130 and A4249_RS07135 overlap by 8 nucleotidesA4249_RS07135 and A4249_RS07140 overlap by 4 nucleotidesA4249_RS07140 and A4249_RS07145 overlap by 1 nucleotides A4249_RS07130: A4249_RS07130 - packaged DNA stabilization protein, at 1,430,512 to 1,431,846 _RS07130 A4249_RS07135: A4249_RS07135 - hypothetical protein, at 1,431,839 to 1,432,507 _RS07135 A4249_RS07140: A4249_RS07140 - hypothetical protein, at 1,432,504 to 1,432,908 _RS07140 A4249_RS07145: A4249_RS07145 - hypothetical protein, at 1,432,908 to 1,433,531 _RS07145 Position (kb) 1431 1432 1433Strain fitness (log2 ratio) -2 -1 0 1 2at 1430.845 kb on + strand, within A4249_RS07130at 1430.845 kb on + strand, within A4249_RS07130at 1430.845 kb on + strand, within A4249_RS07130at 1430.845 kb on + strand, within A4249_RS07130at 1430.845 kb on + strand, within A4249_RS07130at 1430.846 kb on - strand, within A4249_RS07130at 1430.846 kb on - strand, within A4249_RS07130at 1430.846 kb on - strand, within A4249_RS07130at 1430.851 kb on + strand, within A4249_RS07130at 1430.852 kb on - strand, within A4249_RS07130at 1430.852 kb on - strand, within A4249_RS07130at 1430.852 kb on - strand, within A4249_RS07130at 1430.852 kb on - strand, within A4249_RS07130at 1430.867 kb on + strand, within A4249_RS07130at 1430.868 kb on - strand, within A4249_RS07130at 1430.962 kb on + strand, within A4249_RS07130at 1430.962 kb on + strand, within A4249_RS07130at 1430.963 kb on - strand, within A4249_RS07130at 1431.067 kb on + strand, within A4249_RS07130at 1431.067 kb on + strand, within A4249_RS07130at 1431.067 kb on + strand, within A4249_RS07130at 1431.067 kb on + strand, within A4249_RS07130at 1431.067 kb on + strand, within A4249_RS07130at 1431.067 kb on + strand, within A4249_RS07130at 1431.067 kb on + strand, within A4249_RS07130at 1431.068 kb on - strand, within A4249_RS07130at 1431.068 kb on - strand, within A4249_RS07130at 1431.068 kb on - strand, within A4249_RS07130at 1431.068 kb on - strand, within A4249_RS07130at 1431.068 kb on - strand, within A4249_RS07130at 1431.068 kb on - strand, within A4249_RS07130at 1431.068 kb on - strand, within A4249_RS07130at 1431.068 kb on - strand, within A4249_RS07130at 1431.068 kb on - strand, within A4249_RS07130at 1431.068 kb on - strand, within A4249_RS07130at 1431.068 kb on - strand, within A4249_RS07130at 1431.068 kb on - strand, within A4249_RS07130at 1431.068 kb on - strand, within A4249_RS07130at 1431.068 kb on - strand, within A4249_RS07130at 1431.068 kb on - strand, within A4249_RS07130at 1431.225 kb on + strand, within A4249_RS07130at 1431.225 kb on + strand, within A4249_RS07130at 1431.225 kb on + strand, within A4249_RS07130at 1431.225 kb on + strand, within A4249_RS07130at 1431.225 kb on + strand, within A4249_RS07130at 1431.225 kb on + strand, within A4249_RS07130at 1431.225 kb on + strand, within A4249_RS07130at 1431.226 kb on - strand, within A4249_RS07130at 1431.226 kb on - strand, within A4249_RS07130at 1431.233 kb on - strand, within A4249_RS07130at 1431.239 kb on + strand, within A4249_RS07130at 1431.239 kb on + strand, within A4249_RS07130at 1431.240 kb on - strand, within A4249_RS07130at 1431.240 kb on - strand, within A4249_RS07130at 1431.240 kb on - strand, within A4249_RS07130at 1431.240 kb on - strand, within A4249_RS07130at 1431.240 kb on - strand, within A4249_RS07130at 1431.319 kb on + strand, within A4249_RS07130at 1431.320 kb on - strand, within A4249_RS07130at 1431.320 kb on - strand, within A4249_RS07130at 1431.356 kb on + strand, within A4249_RS07130at 1431.357 kb on - strand, within A4249_RS07130at 1431.377 kb on - strand, within A4249_RS07130at 1431.377 kb on - strand, within A4249_RS07130at 1431.377 kb on - strand, within A4249_RS07130at 1431.433 kb on + strand, within A4249_RS07130at 1431.433 kb on + strand, within A4249_RS07130at 1431.433 kb on + strand, within A4249_RS07130at 1431.433 kb on + strand, within A4249_RS07130at 1431.433 kb on + strand, within A4249_RS07130at 1431.433 kb on + strand, within A4249_RS07130at 1431.433 kb on + strand, within A4249_RS07130at 1431.434 kb on - strand, within A4249_RS07130at 1431.434 kb on - strand, within A4249_RS07130at 1431.434 kb on - strand, within A4249_RS07130at 1431.434 kb on - strand, within A4249_RS07130at 1431.434 kb on - strand, within A4249_RS07130at 1431.451 kb on + strand, within A4249_RS07130at 1431.451 kb on + strand, within A4249_RS07130at 1431.451 kb on + strand, within A4249_RS07130at 1431.451 kb on + strand, within A4249_RS07130at 1431.451 kb on + strand, within A4249_RS07130at 1431.451 kb on + strand, within A4249_RS07130at 1431.451 kb on + strand, within A4249_RS07130at 1431.451 kb on + strand, within A4249_RS07130at 1431.451 kb on + strand, within A4249_RS07130at 1431.451 kb on + strand, within A4249_RS07130at 1431.451 kb on + strand, within A4249_RS07130at 1431.451 kb on + strand, within A4249_RS07130at 1431.452 kb on - strand, within A4249_RS07130at 1431.452 kb on - strand, within A4249_RS07130at 1431.452 kb on - strand, within A4249_RS07130at 1431.452 kb on - strand, within A4249_RS07130at 1431.452 kb on - strand, within A4249_RS07130at 1431.477 kb on + strand, within A4249_RS07130at 1431.477 kb on + strand, within A4249_RS07130at 1431.477 kb on + strand, within A4249_RS07130at 1431.478 kb on - strand, within A4249_RS07130at 1431.478 kb on - strand, within A4249_RS07130at 1431.478 kb on - strand, within A4249_RS07130at 1431.478 kb on - strand, within A4249_RS07130at 1431.478 kb on - strand, within A4249_RS07130at 1431.478 kb on - strand, within A4249_RS07130at 1431.478 kb on - strand, within A4249_RS07130at 1431.478 kb on - strand, within A4249_RS07130at 1431.703 kb on + strand, within A4249_RS07130at 1432.037 kb on + strand, within A4249_RS07135at 1432.037 kb on + strand, within A4249_RS07135at 1432.037 kb on + strand, within A4249_RS07135at 1432.037 kb on + strand, within A4249_RS07135at 1432.037 kb on + strand, within A4249_RS07135at 1432.038 kb on - strand, within A4249_RS07135at 1432.038 kb on - strand, within A4249_RS07135at 1432.038 kb on - strand, within A4249_RS07135at 1432.038 kb on - strand, within A4249_RS07135at 1432.038 kb on - strand, within A4249_RS07135at 1432.208 kb on + strand, within A4249_RS07135at 1432.209 kb on - strand, within A4249_RS07135at 1432.209 kb on - strand, within A4249_RS07135at 1432.361 kb on + strand, within A4249_RS07135at 1432.361 kb on + strand, within A4249_RS07135at 1432.361 kb on + strand, within A4249_RS07135at 1432.361 kb on + strand, within A4249_RS07135at 1432.362 kb on - strand, within A4249_RS07135at 1432.362 kb on - strand, within A4249_RS07135at 1432.362 kb on - strand, within A4249_RS07135at 1432.362 kb on - strand, within A4249_RS07135at 1432.362 kb on - strand, within A4249_RS07135at 1432.362 kb on - strand, within A4249_RS07135at 1432.464 kb on + strandat 1432.464 kb on + strandat 1432.464 kb on + strandat 1432.465 kb on - strandat 1432.485 kb on + strandat 1432.485 kb on + strandat 1432.485 kb on + strandat 1432.485 kb on + strandat 1432.485 kb on + strandat 1432.485 kb on + strandat 1432.486 kb on - strandat 1432.486 kb on - strandat 1432.486 kb on - strandat 1432.486 kb on - strandat 1432.486 kb on - strandat 1432.487 kb on + strandat 1432.487 kb on + strandat 1432.487 kb on + strandat 1432.487 kb on + strandat 1432.488 kb on - strandat 1432.488 kb on - strandat 1432.488 kb on - strandat 1432.488 kb on - strandat 1432.488 kb on - strandat 1432.524 kb on + strandat 1432.744 kb on + strand, within A4249_RS07140at 1432.744 kb on + strand, within A4249_RS07140at 1432.744 kb on + strand, within A4249_RS07140at 1432.805 kb on + strand, within A4249_RS07140at 1432.805 kb on + strand, within A4249_RS07140at 1432.852 kb on + strand, within A4249_RS07140at 1432.852 kb on + strand, within A4249_RS07140at 1432.852 kb on + strand, within A4249_RS07140at 1432.852 kb on + strand, within A4249_RS07140at 1432.852 kb on + strand, within A4249_RS07140at 1432.852 kb on + strand, within A4249_RS07140at 1432.852 kb on + strand, within A4249_RS07140at 1432.852 kb on + strand, within A4249_RS07140at 1432.852 kb on + strand, within A4249_RS07140at 1432.852 kb on + strand, within A4249_RS07140at 1432.852 kb on + strand, within A4249_RS07140at 1432.852 kb on + strand, within A4249_RS07140at 1432.852 kb on + strand, within A4249_RS07140at 1432.852 kb on + strand, within A4249_RS07140at 1432.852 kb on + strand, within A4249_RS07140at 1432.852 kb on + strand, within A4249_RS07140at 1432.852 kb on + strand, within A4249_RS07140at 1432.852 kb on + strand, within A4249_RS07140at 1432.853 kb on - strand, within A4249_RS07140at 1432.853 kb on - strand, within A4249_RS07140at 1432.853 kb on - strand, within A4249_RS07140at 1432.853 kb on - strand, within A4249_RS07140at 1432.853 kb on - strand, within A4249_RS07140at 1432.853 kb on - strand, within A4249_RS07140at 1432.853 kb on - strand, within A4249_RS07140at 1432.853 kb on - strand, within A4249_RS07140at 1432.853 kb on - strand, within A4249_RS07140at 1432.853 kb on - strand, within A4249_RS07140at 1432.853 kb on - strand, within A4249_RS07140at 1432.853 kb on - strand, within A4249_RS07140at 1432.853 kb on - strand, within A4249_RS07140at 1432.853 kb on - strand, within A4249_RS07140at 1432.853 kb on - strand, within A4249_RS07140at 1432.853 kb on - strand, within A4249_RS07140at 1432.853 kb on - strand, within A4249_RS07140at 1432.853 kb on - strand, within A4249_RS07140at 1432.871 kb on - strandat 1432.995 kb on + strand, within A4249_RS07145at 1432.996 kb on - strand, within A4249_RS07145at 1433.268 kb on + strand, within A4249_RS07145at 1433.269 kb on - strand, within A4249_RS07145at 1433.424 kb on + strand, within A4249_RS07145at 1433.498 kb on + strandat 1433.499 kb on - strandat 1433.499 kb on - strandat 1433.499 kb on - strandat 1433.499 kb on - strandat 1433.502 kb on + strandat 1433.502 kb on + strandat 1433.502 kb on + strandat 1433.502 kb on + strandat 1433.502 kb on + strandat 1433.503 kb on - strandat 1433.503 kb on - strandat 1433.503 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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1,430,845 + A4249_RS07130 0.25 -1.1
1,430,845 + A4249_RS07130 0.25 -0.3
1,430,845 + A4249_RS07130 0.25 +0.2
1,430,845 + A4249_RS07130 0.25 +0.1
1,430,845 + A4249_RS07130 0.25 +0.7
1,430,846 - A4249_RS07130 0.25 -1.2
1,430,846 - A4249_RS07130 0.25 -0.1
1,430,846 - A4249_RS07130 0.25 -0.7
1,430,851 + A4249_RS07130 0.25 -0.5
1,430,852 - A4249_RS07130 0.25 +0.9
1,430,852 - A4249_RS07130 0.25 -0.0
1,430,852 - A4249_RS07130 0.25 +2.0
1,430,852 - A4249_RS07130 0.25 -0.6
1,430,867 + A4249_RS07130 0.27 -0.0
1,430,868 - A4249_RS07130 0.27 -0.0
1,430,962 + A4249_RS07130 0.34 +0.3
1,430,962 + A4249_RS07130 0.34 +0.4
1,430,963 - A4249_RS07130 0.34 -0.9
1,431,067 + A4249_RS07130 0.42 -0.4
1,431,067 + A4249_RS07130 0.42 -0.1
1,431,067 + A4249_RS07130 0.42 +0.2
1,431,067 + A4249_RS07130 0.42 -1.3
1,431,067 + A4249_RS07130 0.42 -0.8
1,431,067 + A4249_RS07130 0.42 -0.0
1,431,067 + A4249_RS07130 0.42 +0.5
1,431,068 - A4249_RS07130 0.42 -0.5
1,431,068 - A4249_RS07130 0.42 +0.4
1,431,068 - A4249_RS07130 0.42 +0.5
1,431,068 - A4249_RS07130 0.42 -0.6
1,431,068 - A4249_RS07130 0.42 +0.6
1,431,068 - A4249_RS07130 0.42 +0.4
1,431,068 - A4249_RS07130 0.42 +0.1
1,431,068 - A4249_RS07130 0.42 +1.0
1,431,068 - A4249_RS07130 0.42 +0.3
1,431,068 - A4249_RS07130 0.42 +0.4
1,431,068 - A4249_RS07130 0.42 -0.0
1,431,068 - A4249_RS07130 0.42 -0.5
1,431,068 - A4249_RS07130 0.42 -0.0
1,431,068 - A4249_RS07130 0.42 -0.4
1,431,068 - A4249_RS07130 0.42 -0.6
1,431,225 + A4249_RS07130 0.53 -0.1
1,431,225 + A4249_RS07130 0.53 -0.7
1,431,225 + A4249_RS07130 0.53 +0.5
1,431,225 + A4249_RS07130 0.53 +0.1
1,431,225 + A4249_RS07130 0.53 -0.3
1,431,225 + A4249_RS07130 0.53 -0.3
1,431,225 + A4249_RS07130 0.53 +0.0
1,431,226 - A4249_RS07130 0.53 -0.6
1,431,226 - A4249_RS07130 0.53 +0.5
1,431,233 - A4249_RS07130 0.54 -0.5
1,431,239 + A4249_RS07130 0.54 -0.8
1,431,239 + A4249_RS07130 0.54 -1.2
1,431,240 - A4249_RS07130 0.55 +0.1
1,431,240 - A4249_RS07130 0.55 -0.5
1,431,240 - A4249_RS07130 0.55 -0.0
1,431,240 - A4249_RS07130 0.55 +0.2
1,431,240 - A4249_RS07130 0.55 +0.4
1,431,319 + A4249_RS07130 0.60 -0.0
1,431,320 - A4249_RS07130 0.61 +0.3
1,431,320 - A4249_RS07130 0.61 +0.1
1,431,356 + A4249_RS07130 0.63 +0.1
1,431,357 - A4249_RS07130 0.63 -0.0
1,431,377 - A4249_RS07130 0.65 -0.1
1,431,377 - A4249_RS07130 0.65 +0.3
1,431,377 - A4249_RS07130 0.65 +0.7
1,431,433 + A4249_RS07130 0.69 -0.0
1,431,433 + A4249_RS07130 0.69 +0.0
1,431,433 + A4249_RS07130 0.69 -0.2
1,431,433 + A4249_RS07130 0.69 -0.2
1,431,433 + A4249_RS07130 0.69 +0.0
1,431,433 + A4249_RS07130 0.69 +0.2
1,431,433 + A4249_RS07130 0.69 +0.2
1,431,434 - A4249_RS07130 0.69 +0.2
1,431,434 - A4249_RS07130 0.69 +1.0
1,431,434 - A4249_RS07130 0.69 -0.3
1,431,434 - A4249_RS07130 0.69 +1.5
1,431,434 - A4249_RS07130 0.69 +0.4
1,431,451 + A4249_RS07130 0.70 +0.0
1,431,451 + A4249_RS07130 0.70 -0.2
1,431,451 + A4249_RS07130 0.70 -1.0
1,431,451 + A4249_RS07130 0.70 +0.4
1,431,451 + A4249_RS07130 0.70 +0.8
1,431,451 + A4249_RS07130 0.70 -2.6
1,431,451 + A4249_RS07130 0.70 -0.1
1,431,451 + A4249_RS07130 0.70 +1.1
1,431,451 + A4249_RS07130 0.70 -0.6
1,431,451 + A4249_RS07130 0.70 +0.1
1,431,451 + A4249_RS07130 0.70 +0.7
1,431,451 + A4249_RS07130 0.70 +0.7
1,431,452 - A4249_RS07130 0.70 -0.4
1,431,452 - A4249_RS07130 0.70 -0.6
1,431,452 - A4249_RS07130 0.70 +0.6
1,431,452 - A4249_RS07130 0.70 +0.5
1,431,452 - A4249_RS07130 0.70 +0.0
1,431,477 + A4249_RS07130 0.72 +0.4
1,431,477 + A4249_RS07130 0.72 -0.5
1,431,477 + A4249_RS07130 0.72 -0.9
1,431,478 - A4249_RS07130 0.72 -0.0
1,431,478 - A4249_RS07130 0.72 -0.8
1,431,478 - A4249_RS07130 0.72 -0.8
1,431,478 - A4249_RS07130 0.72 +0.4
1,431,478 - A4249_RS07130 0.72 -0.8
1,431,478 - A4249_RS07130 0.72 -0.3
1,431,478 - A4249_RS07130 0.72 -0.5
1,431,478 - A4249_RS07130 0.72 -1.6
1,431,703 + A4249_RS07130 0.89 +0.5
1,432,037 + A4249_RS07135 0.30 -0.5
1,432,037 + A4249_RS07135 0.30 -2.7
1,432,037 + A4249_RS07135 0.30 -0.9
1,432,037 + A4249_RS07135 0.30 -0.9
1,432,037 + A4249_RS07135 0.30 -0.3
1,432,038 - A4249_RS07135 0.30 -0.1
1,432,038 - A4249_RS07135 0.30 -0.4
1,432,038 - A4249_RS07135 0.30 -0.7
1,432,038 - A4249_RS07135 0.30 +0.4
1,432,038 - A4249_RS07135 0.30 +1.1
1,432,208 + A4249_RS07135 0.55 -0.4
1,432,209 - A4249_RS07135 0.55 -0.3
1,432,209 - A4249_RS07135 0.55 -0.6
1,432,361 + A4249_RS07135 0.78 -1.8
1,432,361 + A4249_RS07135 0.78 -0.8
1,432,361 + A4249_RS07135 0.78 +0.8
1,432,361 + A4249_RS07135 0.78 +0.0
1,432,362 - A4249_RS07135 0.78 +0.8
1,432,362 - A4249_RS07135 0.78 +0.2
1,432,362 - A4249_RS07135 0.78 -0.2
1,432,362 - A4249_RS07135 0.78 -0.4
1,432,362 - A4249_RS07135 0.78 +0.5
1,432,362 - A4249_RS07135 0.78 -0.3
1,432,464 + -0.3
1,432,464 + +1.2
1,432,464 + -0.7
1,432,465 - -1.2
1,432,485 + -0.6
1,432,485 + -0.2
1,432,485 + -0.0
1,432,485 + -0.6
1,432,485 + -0.6
1,432,485 + -0.2
1,432,486 - +0.4
1,432,486 - +0.0
1,432,486 - +0.3
1,432,486 - -1.1
1,432,486 - -0.3
1,432,487 + -0.7
1,432,487 + -0.3
1,432,487 + -1.1
1,432,487 + -0.2
1,432,488 - -0.1
1,432,488 - +0.1
1,432,488 - -0.3
1,432,488 - +0.5
1,432,488 - +0.3
1,432,524 + -0.4
1,432,744 + A4249_RS07140 0.59 -0.5
1,432,744 + A4249_RS07140 0.59 -1.0
1,432,744 + A4249_RS07140 0.59 -0.4
1,432,805 + A4249_RS07140 0.74 +0.5
1,432,805 + A4249_RS07140 0.74 +0.3
1,432,852 + A4249_RS07140 0.86 -1.2
1,432,852 + A4249_RS07140 0.86 -0.4
1,432,852 + A4249_RS07140 0.86 -0.4
1,432,852 + A4249_RS07140 0.86 +0.2
1,432,852 + A4249_RS07140 0.86 +0.9
1,432,852 + A4249_RS07140 0.86 -0.1
1,432,852 + A4249_RS07140 0.86 -0.5
1,432,852 + A4249_RS07140 0.86 -0.2
1,432,852 + A4249_RS07140 0.86 -0.1
1,432,852 + A4249_RS07140 0.86 -0.4
1,432,852 + A4249_RS07140 0.86 -1.2
1,432,852 + A4249_RS07140 0.86 -0.7
1,432,852 + A4249_RS07140 0.86 +0.3
1,432,852 + A4249_RS07140 0.86 -0.3
1,432,852 + A4249_RS07140 0.86 -1.9
1,432,852 + A4249_RS07140 0.86 -0.4
1,432,852 + A4249_RS07140 0.86 +0.2
1,432,852 + A4249_RS07140 0.86 -0.3
1,432,853 - A4249_RS07140 0.86 -0.5
1,432,853 - A4249_RS07140 0.86 -0.6
1,432,853 - A4249_RS07140 0.86 -0.7
1,432,853 - A4249_RS07140 0.86 -0.1
1,432,853 - A4249_RS07140 0.86 -0.5
1,432,853 - A4249_RS07140 0.86 -0.0
1,432,853 - A4249_RS07140 0.86 +0.2
1,432,853 - A4249_RS07140 0.86 +0.4
1,432,853 - A4249_RS07140 0.86 -0.1
1,432,853 - A4249_RS07140 0.86 -1.0
1,432,853 - A4249_RS07140 0.86 -0.4
1,432,853 - A4249_RS07140 0.86 -0.1
1,432,853 - A4249_RS07140 0.86 +0.1
1,432,853 - A4249_RS07140 0.86 +0.2
1,432,853 - A4249_RS07140 0.86 -0.4
1,432,853 - A4249_RS07140 0.86 -0.3
1,432,853 - A4249_RS07140 0.86 -1.3
1,432,853 - A4249_RS07140 0.86 -0.8
1,432,871 - -1.1
1,432,995 + A4249_RS07145 0.14 -0.2
1,432,996 - A4249_RS07145 0.14 -0.3
1,433,268 + A4249_RS07145 0.58 -1.9
1,433,269 - A4249_RS07145 0.58 +0.1
1,433,424 + A4249_RS07145 0.83 +0.4
1,433,498 + +0.2
1,433,499 - +0.1
1,433,499 - -0.1
1,433,499 - +0.8
1,433,499 - -0.0
1,433,502 + -0.8
1,433,502 + -0.3
1,433,502 + -1.1
1,433,502 + -0.2
1,433,502 + -0.1
1,433,503 - -0.2
1,433,503 - +0.3
1,433,503 - -0.1

Or see this region's nucleotide sequence