Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04770

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04765 and A4249_RS04770 are separated by 144 nucleotidesA4249_RS04770 and A4249_RS04775 overlap by 1 nucleotides A4249_RS04765: A4249_RS04765 - ATP-dependent DNA helicase RecG, at 989,159 to 991,246 _RS04765 A4249_RS04770: A4249_RS04770 - succinate dehydrogenase assembly factor 2, at 991,391 to 991,732 _RS04770 A4249_RS04775: A4249_RS04775 - transcription-repair coupling factor, at 991,732 to 995,181 _RS04775 Position (kb) 991 992Strain fitness (log2 ratio) -2 -1 0 1at 990.585 kb on + strand, within A4249_RS04765at 990.585 kb on + strand, within A4249_RS04765at 990.586 kb on - strand, within A4249_RS04765at 990.586 kb on - strand, within A4249_RS04765at 990.586 kb on - strand, within A4249_RS04765at 990.795 kb on + strand, within A4249_RS04765at 990.796 kb on - strand, within A4249_RS04765at 990.796 kb on - strand, within A4249_RS04765at 990.796 kb on - strand, within A4249_RS04765at 990.839 kb on - strand, within A4249_RS04765at 990.934 kb on + strand, within A4249_RS04765at 991.259 kb on - strandat 991.259 kb on - strandat 991.259 kb on - strandat 991.259 kb on - strandat 991.259 kb on - strandat 991.299 kb on + strandat 991.299 kb on + strandat 991.299 kb on + strandat 991.299 kb on + strandat 991.300 kb on - strandat 991.300 kb on - strandat 991.300 kb on - strandat 992.158 kb on + strand, within A4249_RS04775at 992.158 kb on + strand, within A4249_RS04775at 992.158 kb on + strand, within A4249_RS04775at 992.159 kb on - strand, within A4249_RS04775at 992.176 kb on + strand, within A4249_RS04775at 992.176 kb on + strand, within A4249_RS04775at 992.243 kb on - strand, within A4249_RS04775at 992.243 kb on - strand, within A4249_RS04775at 992.243 kb on - strand, within A4249_RS04775at 992.420 kb on - strand, within A4249_RS04775at 992.420 kb on - strand, within A4249_RS04775at 992.420 kb on - strand, within A4249_RS04775at 992.420 kb on - strand, within A4249_RS04775at 992.459 kb on - strand, within A4249_RS04775at 992.459 kb on - strand, within A4249_RS04775at 992.459 kb on - strand, within A4249_RS04775at 992.459 kb on - strand, within A4249_RS04775at 992.459 kb on - strand, within A4249_RS04775at 992.518 kb on + strand, within A4249_RS04775at 992.518 kb on + strand, within A4249_RS04775at 992.518 kb on + strand, within A4249_RS04775at 992.518 kb on + strand, within A4249_RS04775at 992.519 kb on - strand, within A4249_RS04775at 992.545 kb on + strand, within A4249_RS04775at 992.546 kb on - strand, within A4249_RS04775at 992.629 kb on + strand, within A4249_RS04775at 992.629 kb on + strand, within A4249_RS04775at 992.629 kb on + strand, within A4249_RS04775at 992.630 kb on - strand, within A4249_RS04775at 992.630 kb on - strand, within A4249_RS04775at 992.630 kb on - strand, within A4249_RS04775at 992.630 kb on - strand, within A4249_RS04775at 992.704 kb on + strand, within A4249_RS04775at 992.704 kb on + strand, within A4249_RS04775

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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990,585 + A4249_RS04765 0.68 -0.4
990,585 + A4249_RS04765 0.68 -1.0
990,586 - A4249_RS04765 0.68 -0.1
990,586 - A4249_RS04765 0.68 -1.6
990,586 - A4249_RS04765 0.68 +0.2
990,795 + A4249_RS04765 0.78 +0.8
990,796 - A4249_RS04765 0.78 +1.6
990,796 - A4249_RS04765 0.78 -0.5
990,796 - A4249_RS04765 0.78 +0.5
990,839 - A4249_RS04765 0.80 -0.5
990,934 + A4249_RS04765 0.85 +0.0
991,259 - -0.6
991,259 - -0.3
991,259 - +0.9
991,259 - +0.8
991,259 - -0.7
991,299 + +0.8
991,299 + +0.2
991,299 + +0.3
991,299 + -0.0
991,300 - +0.3
991,300 - +0.3
991,300 - -0.0
992,158 + A4249_RS04775 0.12 +0.0
992,158 + A4249_RS04775 0.12 -1.8
992,158 + A4249_RS04775 0.12 +0.0
992,159 - A4249_RS04775 0.12 +0.5
992,176 + A4249_RS04775 0.13 -0.7
992,176 + A4249_RS04775 0.13 +0.2
992,243 - A4249_RS04775 0.15 +1.4
992,243 - A4249_RS04775 0.15 -1.0
992,243 - A4249_RS04775 0.15 -0.8
992,420 - A4249_RS04775 0.20 +0.7
992,420 - A4249_RS04775 0.20 +0.3
992,420 - A4249_RS04775 0.20 +0.4
992,420 - A4249_RS04775 0.20 +0.6
992,459 - A4249_RS04775 0.21 -0.3
992,459 - A4249_RS04775 0.21 -0.1
992,459 - A4249_RS04775 0.21 -0.6
992,459 - A4249_RS04775 0.21 +0.3
992,459 - A4249_RS04775 0.21 +1.0
992,518 + A4249_RS04775 0.23 +0.2
992,518 + A4249_RS04775 0.23 +1.1
992,518 + A4249_RS04775 0.23 +0.5
992,518 + A4249_RS04775 0.23 +0.2
992,519 - A4249_RS04775 0.23 -1.0
992,545 + A4249_RS04775 0.24 +0.3
992,546 - A4249_RS04775 0.24 -0.2
992,629 + A4249_RS04775 0.26 -0.3
992,629 + A4249_RS04775 0.26 -0.1
992,629 + A4249_RS04775 0.26 -0.2
992,630 - A4249_RS04775 0.26 +0.5
992,630 - A4249_RS04775 0.26 -0.3
992,630 - A4249_RS04775 0.26 +0.0
992,630 - A4249_RS04775 0.26 -0.4
992,704 + A4249_RS04775 0.28 +0.4
992,704 + A4249_RS04775 0.28 -0.3

Or see this region's nucleotide sequence