Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04140

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04135 and A4249_RS04140 overlap by 16 nucleotidesA4249_RS04140 and A4249_RS04145 overlap by 4 nucleotidesA4249_RS04145 and A4249_RS04150 are separated by 134 nucleotides A4249_RS04135: A4249_RS04135 - ABC transporter ATP-binding protein/permease, at 859,924 to 861,774 _RS04135 A4249_RS04140: A4249_RS04140 - chemotaxis protein CheE, at 861,759 to 862,238 _RS04140 A4249_RS04145: A4249_RS04145 - response regulator, at 862,235 to 862,786 _RS04145 A4249_RS04150: A4249_RS04150 - acetyl-CoA carboxylase carboxyltransferase subunit alpha, at 862,921 to 863,868 _RS04150 Position (kb) 861 862 863Strain fitness (log2 ratio) -3 -2 -1 0 1at 860.863 kb on + strand, within A4249_RS04135at 860.867 kb on + strand, within A4249_RS04135at 860.867 kb on + strand, within A4249_RS04135at 860.867 kb on + strand, within A4249_RS04135at 860.867 kb on + strand, within A4249_RS04135at 860.867 kb on + strand, within A4249_RS04135at 860.867 kb on + strand, within A4249_RS04135at 860.868 kb on - strand, within A4249_RS04135at 860.868 kb on - strand, within A4249_RS04135at 860.868 kb on - strand, within A4249_RS04135at 860.868 kb on - strand, within A4249_RS04135at 860.869 kb on + strand, within A4249_RS04135at 860.869 kb on + strand, within A4249_RS04135at 860.869 kb on + strand, within A4249_RS04135at 860.869 kb on + strand, within A4249_RS04135at 860.869 kb on + strand, within A4249_RS04135at 860.870 kb on - strand, within A4249_RS04135at 860.870 kb on - strand, within A4249_RS04135at 860.870 kb on - strand, within A4249_RS04135at 860.870 kb on - strand, within A4249_RS04135at 861.077 kb on + strand, within A4249_RS04135at 861.078 kb on - strand, within A4249_RS04135at 861.078 kb on - strand, within A4249_RS04135at 861.094 kb on + strand, within A4249_RS04135at 861.094 kb on + strand, within A4249_RS04135at 861.715 kb on + strandat 861.715 kb on + strandat 861.715 kb on + strandat 861.715 kb on + strandat 861.716 kb on - strandat 861.716 kb on - strandat 861.798 kb on + strandat 861.798 kb on + strandat 861.799 kb on - strandat 861.799 kb on - strandat 861.799 kb on - strandat 861.799 kb on - strandat 861.948 kb on + strand, within A4249_RS04140at 861.948 kb on + strand, within A4249_RS04140at 861.948 kb on + strand, within A4249_RS04140at 861.948 kb on + strand, within A4249_RS04140at 861.948 kb on + strand, within A4249_RS04140at 861.949 kb on - strand, within A4249_RS04140at 861.949 kb on - strand, within A4249_RS04140at 861.949 kb on - strand, within A4249_RS04140at 862.024 kb on + strand, within A4249_RS04140at 862.025 kb on - strand, within A4249_RS04140at 862.089 kb on - strand, within A4249_RS04140at 862.089 kb on - strand, within A4249_RS04140at 862.238 kb on + strandat 862.238 kb on + strandat 862.238 kb on + strandat 862.239 kb on - strandat 862.302 kb on + strand, within A4249_RS04145at 862.302 kb on + strand, within A4249_RS04145at 862.302 kb on + strand, within A4249_RS04145at 862.302 kb on + strand, within A4249_RS04145at 862.303 kb on - strand, within A4249_RS04145at 862.338 kb on + strand, within A4249_RS04145at 862.338 kb on + strand, within A4249_RS04145at 862.339 kb on - strand, within A4249_RS04145at 862.339 kb on - strand, within A4249_RS04145at 862.339 kb on - strand, within A4249_RS04145at 862.633 kb on + strand, within A4249_RS04145at 862.633 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.651 kb on - strand, within A4249_RS04145at 862.651 kb on - strand, within A4249_RS04145at 862.651 kb on - strand, within A4249_RS04145at 862.651 kb on - strand, within A4249_RS04145at 862.651 kb on - strand, within A4249_RS04145at 862.651 kb on - strand, within A4249_RS04145

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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860,863 + A4249_RS04135 0.51 -0.2
860,867 + A4249_RS04135 0.51 +0.6
860,867 + A4249_RS04135 0.51 -0.9
860,867 + A4249_RS04135 0.51 -0.6
860,867 + A4249_RS04135 0.51 -0.2
860,867 + A4249_RS04135 0.51 +0.0
860,867 + A4249_RS04135 0.51 -0.4
860,868 - A4249_RS04135 0.51 -0.4
860,868 - A4249_RS04135 0.51 +0.1
860,868 - A4249_RS04135 0.51 -1.9
860,868 - A4249_RS04135 0.51 +0.1
860,869 + A4249_RS04135 0.51 -0.5
860,869 + A4249_RS04135 0.51 -0.1
860,869 + A4249_RS04135 0.51 +0.4
860,869 + A4249_RS04135 0.51 -0.1
860,869 + A4249_RS04135 0.51 -0.1
860,870 - A4249_RS04135 0.51 +0.0
860,870 - A4249_RS04135 0.51 -0.3
860,870 - A4249_RS04135 0.51 +0.4
860,870 - A4249_RS04135 0.51 +1.2
861,077 + A4249_RS04135 0.62 -0.2
861,078 - A4249_RS04135 0.62 +0.1
861,078 - A4249_RS04135 0.62 +1.1
861,094 + A4249_RS04135 0.63 +0.1
861,094 + A4249_RS04135 0.63 -0.4
861,715 + -0.3
861,715 + +0.6
861,715 + +0.5
861,715 + -0.4
861,716 - +0.7
861,716 - +1.2
861,798 + -0.2
861,798 + -1.0
861,799 - +0.8
861,799 - +0.2
861,799 - +0.6
861,799 - -0.7
861,948 + A4249_RS04140 0.39 -1.3
861,948 + A4249_RS04140 0.39 +0.7
861,948 + A4249_RS04140 0.39 +0.4
861,948 + A4249_RS04140 0.39 +0.8
861,948 + A4249_RS04140 0.39 +0.1
861,949 - A4249_RS04140 0.40 -1.0
861,949 - A4249_RS04140 0.40 +0.9
861,949 - A4249_RS04140 0.40 +0.3
862,024 + A4249_RS04140 0.55 +0.1
862,025 - A4249_RS04140 0.55 +0.3
862,089 - A4249_RS04140 0.69 +0.4
862,089 - A4249_RS04140 0.69 -0.1
862,238 + +0.6
862,238 + -3.1
862,238 + -0.2
862,239 - +0.2
862,302 + A4249_RS04145 0.12 +0.4
862,302 + A4249_RS04145 0.12 +0.3
862,302 + A4249_RS04145 0.12 -0.8
862,302 + A4249_RS04145 0.12 -0.2
862,303 - A4249_RS04145 0.12 -0.0
862,338 + A4249_RS04145 0.19 +0.0
862,338 + A4249_RS04145 0.19 +0.2
862,339 - A4249_RS04145 0.19 +0.3
862,339 - A4249_RS04145 0.19 +0.5
862,339 - A4249_RS04145 0.19 -0.2
862,633 + A4249_RS04145 0.72 -0.1
862,633 + A4249_RS04145 0.72 +0.9
862,650 + A4249_RS04145 0.75 +0.4
862,650 + A4249_RS04145 0.75 +0.3
862,650 + A4249_RS04145 0.75 -0.2
862,650 + A4249_RS04145 0.75 +0.0
862,650 + A4249_RS04145 0.75 +0.6
862,650 + A4249_RS04145 0.75 +0.4
862,650 + A4249_RS04145 0.75 +0.5
862,650 + A4249_RS04145 0.75 +0.4
862,650 + A4249_RS04145 0.75 -0.5
862,650 + A4249_RS04145 0.75 +0.1
862,651 - A4249_RS04145 0.75 -0.1
862,651 - A4249_RS04145 0.75 +0.0
862,651 - A4249_RS04145 0.75 -1.2
862,651 - A4249_RS04145 0.75 +1.1
862,651 - A4249_RS04145 0.75 -0.2
862,651 - A4249_RS04145 0.75 -0.1

Or see this region's nucleotide sequence