Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS03670

Experiment: Thymine 0.793 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS03660 and A4249_RS03665 are separated by 62 nucleotidesA4249_RS03665 and A4249_RS03670 overlap by 8 nucleotidesA4249_RS03670 and A4249_RS03675 are separated by 7 nucleotidesA4249_RS03675 and A4249_RS03680 are separated by 175 nucleotidesA4249_RS03680 and A4249_RS03685 are separated by 24 nucleotides A4249_RS03660: A4249_RS03660 - PAS domain-containing sensor histidine kinase, at 774,679 to 775,686 _RS03660 A4249_RS03665: A4249_RS03665 - ArsC family reductase, at 775,749 to 776,096 _RS03665 A4249_RS03670: A4249_RS03670 - endonuclease/exonuclease/phosphatase family protein, at 776,089 to 776,898 _RS03670 A4249_RS03675: A4249_RS03675 - DUF2188 domain-containing protein, at 776,906 to 777,145 _RS03675 A4249_RS03680: A4249_RS03680 - DUF6249 domain-containing protein, at 777,321 to 777,719 _RS03680 A4249_RS03685: A4249_RS03685 - sigma-70 family RNA polymerase sigma factor, at 777,744 to 778,301 _RS03685 Position (kb) 776 777Strain fitness (log2 ratio) -2 -1 0 1at 775.332 kb on + strand, within A4249_RS03660at 775.333 kb on - strand, within A4249_RS03660at 775.333 kb on - strand, within A4249_RS03660at 775.631 kb on + strandat 775.631 kb on + strandat 775.632 kb on - strandat 775.632 kb on - strandat 775.632 kb on - strandat 775.755 kb on + strandat 775.755 kb on + strandat 775.755 kb on + strandat 775.755 kb on + strandat 775.755 kb on + strandat 775.755 kb on + strandat 775.755 kb on + strandat 775.755 kb on + strandat 775.755 kb on + strandat 775.755 kb on + strandat 775.755 kb on + strandat 775.755 kb on + strandat 775.755 kb on + strandat 775.755 kb on + strandat 775.755 kb on + strandat 775.755 kb on + strandat 775.756 kb on - strandat 775.756 kb on - strandat 775.756 kb on - strandat 775.756 kb on - strandat 775.756 kb on - strandat 775.756 kb on - strandat 775.756 kb on - strandat 775.756 kb on - strandat 775.756 kb on - strandat 775.756 kb on - strandat 775.756 kb on - strandat 775.756 kb on - strandat 775.764 kb on + strandat 775.765 kb on - strandat 775.765 kb on - strandat 775.765 kb on - strandat 775.765 kb on - strandat 775.765 kb on - strandat 775.830 kb on + strand, within A4249_RS03665at 775.830 kb on + strand, within A4249_RS03665at 775.830 kb on + strand, within A4249_RS03665at 775.830 kb on + strand, within A4249_RS03665at 775.830 kb on + strand, within A4249_RS03665at 775.830 kb on + strand, within A4249_RS03665at 775.830 kb on + strand, within A4249_RS03665at 775.830 kb on + strand, within A4249_RS03665at 775.830 kb on + strand, within A4249_RS03665at 775.831 kb on - strand, within A4249_RS03665at 775.831 kb on - strand, within A4249_RS03665at 775.831 kb on - strand, within A4249_RS03665at 775.831 kb on - strand, within A4249_RS03665at 775.831 kb on - strand, within A4249_RS03665at 775.831 kb on - strand, within A4249_RS03665at 775.831 kb on - strand, within A4249_RS03665at 775.831 kb on - strand, within A4249_RS03665at 775.831 kb on - strand, within A4249_RS03665at 775.831 kb on - strand, within A4249_RS03665at 775.831 kb on - strand, within A4249_RS03665at 775.831 kb on - strand, within A4249_RS03665at 775.831 kb on - strand, within A4249_RS03665at 775.831 kb on - strand, within A4249_RS03665at 775.845 kb on + strand, within A4249_RS03665at 775.845 kb on + strand, within A4249_RS03665at 775.846 kb on - strand, within A4249_RS03665at 775.846 kb on - strand, within A4249_RS03665at 775.846 kb on - strand, within A4249_RS03665at 775.846 kb on - strand, within A4249_RS03665at 776.076 kb on + strandat 776.077 kb on - strandat 776.090 kb on + strandat 776.090 kb on + strandat 776.091 kb on - strandat 776.091 kb on - strandat 776.091 kb on - strandat 776.135 kb on + strandat 776.386 kb on + strand, within A4249_RS03670at 776.387 kb on - strand, within A4249_RS03670at 776.823 kb on + strandat 776.824 kb on - strandat 776.824 kb on - strandat 776.982 kb on + strand, within A4249_RS03675at 776.983 kb on - strand, within A4249_RS03675at 777.078 kb on + strand, within A4249_RS03675at 777.078 kb on + strand, within A4249_RS03675at 777.078 kb on + strand, within A4249_RS03675at 777.079 kb on - strand, within A4249_RS03675at 777.079 kb on - strand, within A4249_RS03675at 777.079 kb on - strand, within A4249_RS03675at 777.079 kb on - strand, within A4249_RS03675at 777.096 kb on + strand, within A4249_RS03675at 777.097 kb on - strand, within A4249_RS03675at 777.097 kb on - strand, within A4249_RS03675at 777.097 kb on - strand, within A4249_RS03675at 777.129 kb on + strandat 777.129 kb on + strandat 777.129 kb on + strandat 777.130 kb on - strandat 777.180 kb on + strandat 777.181 kb on - strandat 777.181 kb on - strandat 777.214 kb on + strandat 777.214 kb on + strandat 777.215 kb on - strandat 777.215 kb on - strandat 777.215 kb on - strandat 777.215 kb on - strandat 777.229 kb on + strandat 777.230 kb on - strandat 777.313 kb on + strandat 777.314 kb on - strandat 777.314 kb on - strandat 777.371 kb on + strand, within A4249_RS03680at 777.371 kb on + strand, within A4249_RS03680at 777.372 kb on - strand, within A4249_RS03680at 777.405 kb on + strand, within A4249_RS03680at 777.405 kb on + strand, within A4249_RS03680at 777.406 kb on - strand, within A4249_RS03680at 777.605 kb on + strand, within A4249_RS03680at 777.606 kb on - strand, within A4249_RS03680at 777.606 kb on - strand, within A4249_RS03680at 777.606 kb on - strand, within A4249_RS03680at 777.606 kb on - strand, within A4249_RS03680at 777.656 kb on + strand, within A4249_RS03680at 777.657 kb on - strand, within A4249_RS03680at 777.657 kb on - strand, within A4249_RS03680at 777.816 kb on + strand, within A4249_RS03685at 777.816 kb on + strand, within A4249_RS03685at 777.816 kb on + strand, within A4249_RS03685at 777.816 kb on + strand, within A4249_RS03685at 777.816 kb on + strand, within A4249_RS03685at 777.817 kb on - strand, within A4249_RS03685at 777.817 kb on - strand, within A4249_RS03685at 777.817 kb on - strand, within A4249_RS03685at 777.817 kb on - strand, within A4249_RS03685

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
remove
775,332 + A4249_RS03660 0.65 -0.4
775,333 - A4249_RS03660 0.65 -0.0
775,333 - A4249_RS03660 0.65 +0.0
775,631 + +0.1
775,631 + -0.5
775,632 - +0.0
775,632 - +0.4
775,632 - -0.3
775,755 + +0.7
775,755 + +0.7
775,755 + -0.1
775,755 + +0.2
775,755 + -0.1
775,755 + -0.5
775,755 + -0.3
775,755 + +0.9
775,755 + +0.0
775,755 + +0.8
775,755 + +0.7
775,755 + -0.1
775,755 + -0.0
775,755 + +0.2
775,755 + +0.4
775,755 + +0.4
775,756 - +0.2
775,756 - +0.8
775,756 - -1.5
775,756 - +0.9
775,756 - -0.2
775,756 - +0.1
775,756 - +0.3
775,756 - -0.3
775,756 - -0.2
775,756 - +0.0
775,756 - +1.1
775,756 - +0.2
775,764 + +0.1
775,765 - -0.1
775,765 - +0.9
775,765 - -1.0
775,765 - +0.0
775,765 - +0.5
775,830 + A4249_RS03665 0.23 -0.7
775,830 + A4249_RS03665 0.23 -0.5
775,830 + A4249_RS03665 0.23 +0.2
775,830 + A4249_RS03665 0.23 +0.1
775,830 + A4249_RS03665 0.23 +0.7
775,830 + A4249_RS03665 0.23 -0.5
775,830 + A4249_RS03665 0.23 -0.3
775,830 + A4249_RS03665 0.23 -1.1
775,830 + A4249_RS03665 0.23 +0.2
775,831 - A4249_RS03665 0.24 -0.0
775,831 - A4249_RS03665 0.24 +1.4
775,831 - A4249_RS03665 0.24 -1.3
775,831 - A4249_RS03665 0.24 -0.5
775,831 - A4249_RS03665 0.24 +0.6
775,831 - A4249_RS03665 0.24 +0.6
775,831 - A4249_RS03665 0.24 -0.2
775,831 - A4249_RS03665 0.24 -0.4
775,831 - A4249_RS03665 0.24 +0.5
775,831 - A4249_RS03665 0.24 +0.4
775,831 - A4249_RS03665 0.24 -0.4
775,831 - A4249_RS03665 0.24 -0.8
775,831 - A4249_RS03665 0.24 -0.1
775,831 - A4249_RS03665 0.24 -0.0
775,845 + A4249_RS03665 0.28 +0.4
775,845 + A4249_RS03665 0.28 -0.7
775,846 - A4249_RS03665 0.28 -0.3
775,846 - A4249_RS03665 0.28 -0.7
775,846 - A4249_RS03665 0.28 +0.3
775,846 - A4249_RS03665 0.28 +0.3
776,076 + -1.0
776,077 - +0.6
776,090 + -1.3
776,090 + -0.2
776,091 - +0.5
776,091 - -0.5
776,091 - +1.1
776,135 + -0.1
776,386 + A4249_RS03670 0.37 +0.5
776,387 - A4249_RS03670 0.37 +0.3
776,823 + +1.0
776,824 - -0.1
776,824 - -0.6
776,982 + A4249_RS03675 0.32 -0.6
776,983 - A4249_RS03675 0.32 +0.2
777,078 + A4249_RS03675 0.72 -0.7
777,078 + A4249_RS03675 0.72 +0.3
777,078 + A4249_RS03675 0.72 +0.6
777,079 - A4249_RS03675 0.72 -0.3
777,079 - A4249_RS03675 0.72 -0.8
777,079 - A4249_RS03675 0.72 +0.2
777,079 - A4249_RS03675 0.72 -0.2
777,096 + A4249_RS03675 0.79 -0.4
777,097 - A4249_RS03675 0.80 +0.0
777,097 - A4249_RS03675 0.80 -0.6
777,097 - A4249_RS03675 0.80 +0.7
777,129 + +0.4
777,129 + +0.3
777,129 + +0.6
777,130 - +0.3
777,180 + +0.3
777,181 - +0.6
777,181 - +0.4
777,214 + -0.1
777,214 + -1.6
777,215 - +0.3
777,215 - +0.9
777,215 - -0.2
777,215 - -0.6
777,229 + -0.6
777,230 - -0.6
777,313 + -1.2
777,314 - -0.5
777,314 - -0.7
777,371 + A4249_RS03680 0.13 +0.3
777,371 + A4249_RS03680 0.13 -0.1
777,372 - A4249_RS03680 0.13 -0.1
777,405 + A4249_RS03680 0.21 +0.5
777,405 + A4249_RS03680 0.21 +0.7
777,406 - A4249_RS03680 0.21 -0.6
777,605 + A4249_RS03680 0.71 -2.4
777,606 - A4249_RS03680 0.71 -1.7
777,606 - A4249_RS03680 0.71 +0.7
777,606 - A4249_RS03680 0.71 -0.2
777,606 - A4249_RS03680 0.71 +0.8
777,656 + A4249_RS03680 0.84 -0.5
777,657 - A4249_RS03680 0.84 +0.0
777,657 - A4249_RS03680 0.84 -0.7
777,816 + A4249_RS03685 0.13 +0.4
777,816 + A4249_RS03685 0.13 +0.1
777,816 + A4249_RS03685 0.13 -0.6
777,816 + A4249_RS03685 0.13 +0.0
777,816 + A4249_RS03685 0.13 -0.1
777,817 - A4249_RS03685 0.13 +0.5
777,817 - A4249_RS03685 0.13 -0.2
777,817 - A4249_RS03685 0.13 +0.3
777,817 - A4249_RS03685 0.13 +0.0

Or see this region's nucleotide sequence