Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS03370

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS03365 and A4249_RS03370 overlap by 4 nucleotidesA4249_RS03370 and A4249_RS03375 are separated by 65 nucleotides A4249_RS03365: A4249_RS03365 - efflux RND transporter permease subunit, at 705,338 to 708,487 _RS03365 A4249_RS03370: A4249_RS03370 - copper-binding protein, at 708,484 to 708,864 _RS03370 A4249_RS03375: A4249_RS03375 - ferredoxin, at 708,930 to 709,343 _RS03375 Position (kb) 708 709Strain fitness (log2 ratio) -2 -1 0 1at 707.504 kb on + strand, within A4249_RS03365at 707.504 kb on + strand, within A4249_RS03365at 707.543 kb on + strand, within A4249_RS03365at 707.810 kb on + strand, within A4249_RS03365at 707.810 kb on + strand, within A4249_RS03365at 707.810 kb on + strand, within A4249_RS03365at 707.810 kb on + strand, within A4249_RS03365at 707.811 kb on - strand, within A4249_RS03365at 707.811 kb on - strand, within A4249_RS03365at 707.811 kb on - strand, within A4249_RS03365at 707.811 kb on - strand, within A4249_RS03365at 707.811 kb on - strand, within A4249_RS03365at 707.811 kb on - strand, within A4249_RS03365at 707.811 kb on - strand, within A4249_RS03365at 707.811 kb on - strand, within A4249_RS03365at 707.811 kb on - strand, within A4249_RS03365at 707.811 kb on - strand, within A4249_RS03365at 707.811 kb on - strand, within A4249_RS03365at 707.909 kb on + strand, within A4249_RS03365at 707.909 kb on + strand, within A4249_RS03365at 707.909 kb on + strand, within A4249_RS03365at 707.910 kb on - strand, within A4249_RS03365at 707.928 kb on - strand, within A4249_RS03365at 707.999 kb on + strand, within A4249_RS03365at 707.999 kb on + strand, within A4249_RS03365at 707.999 kb on + strand, within A4249_RS03365at 707.999 kb on + strand, within A4249_RS03365at 707.999 kb on + strand, within A4249_RS03365at 708.000 kb on - strand, within A4249_RS03365at 708.000 kb on - strand, within A4249_RS03365at 708.000 kb on - strand, within A4249_RS03365at 708.084 kb on - strand, within A4249_RS03365at 708.084 kb on - strand, within A4249_RS03365at 708.084 kb on - strand, within A4249_RS03365at 708.084 kb on - strand, within A4249_RS03365at 708.084 kb on - strand, within A4249_RS03365at 708.084 kb on - strand, within A4249_RS03365at 708.084 kb on - strand, within A4249_RS03365at 708.176 kb on + strandat 708.176 kb on + strandat 708.177 kb on - strandat 708.177 kb on - strandat 708.412 kb on + strandat 708.412 kb on + strandat 708.413 kb on - strandat 708.413 kb on - strandat 708.413 kb on - strandat 708.413 kb on - strandat 708.413 kb on - strandat 708.413 kb on - strandat 708.414 kb on + strandat 708.426 kb on - strandat 708.426 kb on - strandat 708.718 kb on - strand, within A4249_RS03370at 708.756 kb on + strand, within A4249_RS03370at 708.862 kb on + strandat 708.862 kb on + strandat 709.119 kb on - strand, within A4249_RS03375at 709.258 kb on + strand, within A4249_RS03375at 709.258 kb on + strand, within A4249_RS03375at 709.259 kb on - strand, within A4249_RS03375at 709.259 kb on - strand, within A4249_RS03375at 709.259 kb on - strand, within A4249_RS03375at 709.259 kb on - strand, within A4249_RS03375at 709.337 kb on + strandat 709.337 kb on + strandat 709.337 kb on + strandat 709.338 kb on - strandat 709.338 kb on - strandat 709.338 kb on - strandat 709.338 kb on - strandat 709.338 kb on - strandat 709.408 kb on - strandat 709.482 kb on + strandat 709.483 kb on - strandat 709.490 kb on + strandat 709.490 kb on + strandat 709.490 kb on + strandat 709.491 kb on - strandat 709.491 kb on - strandat 709.491 kb on - strandat 709.491 kb on - strandat 709.527 kb on + strandat 709.528 kb on - strandat 709.545 kb on + strandat 709.545 kb on + strandat 709.545 kb on + strandat 709.545 kb on + strandat 709.545 kb on + strandat 709.545 kb on + strandat 709.545 kb on + strandat 709.546 kb on - strandat 709.546 kb on - strandat 709.546 kb on - strandat 709.546 kb on - strandat 709.546 kb on - strandat 709.546 kb on - strandat 709.546 kb on - strandat 709.631 kb on + strandat 709.631 kb on + strandat 709.631 kb on + strandat 709.631 kb on + strandat 709.631 kb on + strandat 709.631 kb on + strandat 709.631 kb on + strandat 709.631 kb on + strandat 709.631 kb on + strandat 709.632 kb on - strandat 709.632 kb on - strandat 709.632 kb on - strandat 709.632 kb on - strandat 709.632 kb on - strandat 709.655 kb on + strandat 709.737 kb on + strandat 709.763 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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707,504 + A4249_RS03365 0.69 -0.2
707,504 + A4249_RS03365 0.69 +0.6
707,543 + A4249_RS03365 0.70 -0.4
707,810 + A4249_RS03365 0.78 +0.7
707,810 + A4249_RS03365 0.78 -0.4
707,810 + A4249_RS03365 0.78 +1.2
707,810 + A4249_RS03365 0.78 -0.6
707,811 - A4249_RS03365 0.79 -0.3
707,811 - A4249_RS03365 0.79 +0.3
707,811 - A4249_RS03365 0.79 -0.2
707,811 - A4249_RS03365 0.79 +0.1
707,811 - A4249_RS03365 0.79 -0.2
707,811 - A4249_RS03365 0.79 -0.1
707,811 - A4249_RS03365 0.79 -0.1
707,811 - A4249_RS03365 0.79 -1.3
707,811 - A4249_RS03365 0.79 -0.9
707,811 - A4249_RS03365 0.79 -0.1
707,811 - A4249_RS03365 0.79 +0.5
707,909 + A4249_RS03365 0.82 +0.1
707,909 + A4249_RS03365 0.82 -0.2
707,909 + A4249_RS03365 0.82 -0.7
707,910 - A4249_RS03365 0.82 +0.0
707,928 - A4249_RS03365 0.82 -0.4
707,999 + A4249_RS03365 0.84 -0.1
707,999 + A4249_RS03365 0.84 -1.0
707,999 + A4249_RS03365 0.84 +0.2
707,999 + A4249_RS03365 0.84 -0.1
707,999 + A4249_RS03365 0.84 -0.4
708,000 - A4249_RS03365 0.85 -0.2
708,000 - A4249_RS03365 0.85 -0.5
708,000 - A4249_RS03365 0.85 -0.3
708,084 - A4249_RS03365 0.87 -0.3
708,084 - A4249_RS03365 0.87 +0.5
708,084 - A4249_RS03365 0.87 +0.8
708,084 - A4249_RS03365 0.87 -0.2
708,084 - A4249_RS03365 0.87 +0.0
708,084 - A4249_RS03365 0.87 -0.6
708,084 - A4249_RS03365 0.87 +0.2
708,176 + +0.1
708,176 + +0.5
708,177 - -0.7
708,177 - +0.4
708,412 + -0.9
708,412 + +0.3
708,413 - -0.2
708,413 - +0.6
708,413 - +0.4
708,413 - -0.5
708,413 - -0.2
708,413 - -0.3
708,414 + -0.4
708,426 - +0.6
708,426 - +0.8
708,718 - A4249_RS03370 0.61 -0.6
708,756 + A4249_RS03370 0.71 +0.7
708,862 + -0.0
708,862 + +0.4
709,119 - A4249_RS03375 0.46 +0.1
709,258 + A4249_RS03375 0.79 +1.1
709,258 + A4249_RS03375 0.79 -0.9
709,259 - A4249_RS03375 0.79 +0.4
709,259 - A4249_RS03375 0.79 +0.6
709,259 - A4249_RS03375 0.79 +0.0
709,259 - A4249_RS03375 0.79 -0.3
709,337 + -0.4
709,337 + -0.5
709,337 + +0.6
709,338 - -0.8
709,338 - +0.0
709,338 - -0.1
709,338 - +0.0
709,338 - +0.5
709,408 - +0.2
709,482 + -0.5
709,483 - +0.2
709,490 + -0.2
709,490 + +0.1
709,490 + -0.1
709,491 - -0.6
709,491 - +0.3
709,491 - -1.1
709,491 - +0.6
709,527 + -0.0
709,528 - +0.7
709,545 + +0.0
709,545 + -0.8
709,545 + +0.3
709,545 + +0.6
709,545 + -1.5
709,545 + -0.5
709,545 + +0.3
709,546 - +0.0
709,546 - -0.7
709,546 - +0.6
709,546 - +0.9
709,546 - -0.3
709,546 - +1.0
709,546 - +0.9
709,631 + -0.3
709,631 + +0.8
709,631 + +0.4
709,631 + -2.7
709,631 + -0.3
709,631 + +0.0
709,631 + +0.6
709,631 + +0.4
709,631 + +0.4
709,632 - -1.0
709,632 - -0.4
709,632 - -0.3
709,632 - +1.0
709,632 - -0.5
709,655 + +0.1
709,737 + -1.1
709,763 - +0.5

Or see this region's nucleotide sequence