Experiment: Thymine 0.793 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS01140 and A4249_RS01145 are separated by 91 nucleotides A4249_RS01145 and A4249_RS01150 are separated by 98 nucleotides
A4249_RS01140: A4249_RS01140 - malate dehydrogenase, at 217,980 to 218,969
_RS01140
A4249_RS01145: A4249_RS01145 - OsmC family protein, at 219,061 to 219,486
_RS01145
A4249_RS01150: A4249_RS01150 - IS3 family transposase, at 219,585 to 220,774
_RS01150
Position (kb) 219
220 Strain fitness (log2 ratio) -1
0
1 at 218.176 kb on + strand, within A4249_RS01140 at 218.176 kb on + strand, within A4249_RS01140 at 218.177 kb on - strand, within A4249_RS01140 at 218.177 kb on - strand, within A4249_RS01140 at 218.207 kb on + strand, within A4249_RS01140 at 218.729 kb on + strand, within A4249_RS01140 at 218.729 kb on + strand, within A4249_RS01140 at 218.729 kb on + strand, within A4249_RS01140 at 218.729 kb on + strand, within A4249_RS01140 at 218.729 kb on + strand, within A4249_RS01140 at 218.729 kb on + strand, within A4249_RS01140 at 218.729 kb on + strand, within A4249_RS01140 at 218.729 kb on + strand, within A4249_RS01140 at 218.730 kb on - strand, within A4249_RS01140 at 218.730 kb on - strand, within A4249_RS01140 at 218.730 kb on - strand, within A4249_RS01140 at 218.730 kb on - strand, within A4249_RS01140 at 218.796 kb on + strand, within A4249_RS01140 at 218.797 kb on - strand, within A4249_RS01140 at 218.797 kb on - strand, within A4249_RS01140 at 218.797 kb on - strand, within A4249_RS01140 at 218.853 kb on + strand, within A4249_RS01140 at 218.853 kb on + strand, within A4249_RS01140 at 218.853 kb on + strand, within A4249_RS01140 at 218.854 kb on - strand, within A4249_RS01140 at 218.854 kb on - strand, within A4249_RS01140 at 218.854 kb on - strand, within A4249_RS01140 at 218.854 kb on - strand, within A4249_RS01140 at 218.854 kb on - strand, within A4249_RS01140 at 218.998 kb on + strand at 218.998 kb on + strand at 218.998 kb on + strand at 218.998 kb on + strand at 218.998 kb on + strand at 218.999 kb on - strand at 218.999 kb on - strand at 218.999 kb on - strand at 218.999 kb on - strand at 218.999 kb on - strand at 218.999 kb on - strand at 218.999 kb on - strand at 218.999 kb on - strand at 218.999 kb on - strand at 218.999 kb on - strand at 219.116 kb on + strand, within A4249_RS01145 at 219.116 kb on + strand, within A4249_RS01145 at 219.235 kb on - strand, within A4249_RS01145 at 219.256 kb on + strand, within A4249_RS01145 at 219.256 kb on + strand, within A4249_RS01145 at 219.257 kb on - strand, within A4249_RS01145 at 219.257 kb on - strand, within A4249_RS01145 at 219.257 kb on - strand, within A4249_RS01145 at 219.257 kb on - strand, within A4249_RS01145 at 219.257 kb on - strand, within A4249_RS01145 at 219.440 kb on + strand, within A4249_RS01145 at 219.440 kb on + strand, within A4249_RS01145 at 219.440 kb on + strand, within A4249_RS01145 at 219.440 kb on + strand, within A4249_RS01145 at 219.440 kb on + strand, within A4249_RS01145 at 219.440 kb on + strand, within A4249_RS01145 at 219.440 kb on + strand, within A4249_RS01145 at 219.440 kb on + strand, within A4249_RS01145 at 219.440 kb on + strand, within A4249_RS01145 at 219.441 kb on - strand, within A4249_RS01145 at 219.444 kb on + strand at 219.444 kb on + strand at 219.444 kb on + strand at 219.445 kb on - strand at 219.445 kb on - strand at 219.445 kb on - strand at 219.484 kb on + strand at 219.484 kb on + strand at 219.484 kb on + strand at 219.484 kb on + strand at 219.484 kb on + strand at 219.484 kb on + strand at 219.484 kb on + strand at 219.485 kb on - strand at 219.485 kb on - strand at 219.485 kb on - strand at 219.485 kb on - strand at 219.485 kb on - strand at 219.485 kb on - strand at 219.485 kb on - strand at 219.485 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C) remove 218,176 + A4249_RS01140 0.20 +0.4 218,176 + A4249_RS01140 0.20 +0.4 218,177 - A4249_RS01140 0.20 -0.2 218,177 - A4249_RS01140 0.20 -0.2 218,207 + A4249_RS01140 0.23 +0.0 218,729 + A4249_RS01140 0.76 -0.2 218,729 + A4249_RS01140 0.76 +0.6 218,729 + A4249_RS01140 0.76 +1.2 218,729 + A4249_RS01140 0.76 +0.2 218,729 + A4249_RS01140 0.76 +0.0 218,729 + A4249_RS01140 0.76 -0.1 218,729 + A4249_RS01140 0.76 +1.0 218,729 + A4249_RS01140 0.76 +0.4 218,730 - A4249_RS01140 0.76 +0.8 218,730 - A4249_RS01140 0.76 -0.4 218,730 - A4249_RS01140 0.76 -0.0 218,730 - A4249_RS01140 0.76 +0.1 218,796 + A4249_RS01140 0.82 +0.7 218,797 - A4249_RS01140 0.83 +0.5 218,797 - A4249_RS01140 0.83 -0.9 218,797 - A4249_RS01140 0.83 +0.5 218,853 + A4249_RS01140 0.88 -0.3 218,853 + A4249_RS01140 0.88 +0.1 218,853 + A4249_RS01140 0.88 -0.2 218,854 - A4249_RS01140 0.88 +0.3 218,854 - A4249_RS01140 0.88 +0.1 218,854 - A4249_RS01140 0.88 -1.3 218,854 - A4249_RS01140 0.88 +0.4 218,854 - A4249_RS01140 0.88 +0.3 218,998 + -0.1 218,998 + +0.3 218,998 + -0.6 218,998 + -0.4 218,998 + -0.5 218,999 - -0.1 218,999 - -0.2 218,999 - +0.3 218,999 - -0.1 218,999 - +0.2 218,999 - +0.7 218,999 - -1.0 218,999 - -0.5 218,999 - +0.9 218,999 - -0.3 219,116 + A4249_RS01145 0.13 +0.3 219,116 + A4249_RS01145 0.13 +0.7 219,235 - A4249_RS01145 0.41 -0.3 219,256 + A4249_RS01145 0.46 -0.7 219,256 + A4249_RS01145 0.46 +0.4 219,257 - A4249_RS01145 0.46 -1.0 219,257 - A4249_RS01145 0.46 -0.9 219,257 - A4249_RS01145 0.46 -0.1 219,257 - A4249_RS01145 0.46 +0.2 219,257 - A4249_RS01145 0.46 +0.3 219,440 + A4249_RS01145 0.89 -0.2 219,440 + A4249_RS01145 0.89 -0.5 219,440 + A4249_RS01145 0.89 -0.4 219,440 + A4249_RS01145 0.89 -0.4 219,440 + A4249_RS01145 0.89 -0.4 219,440 + A4249_RS01145 0.89 -1.0 219,440 + A4249_RS01145 0.89 -0.8 219,440 + A4249_RS01145 0.89 +0.3 219,440 + A4249_RS01145 0.89 -0.6 219,441 - A4249_RS01145 0.89 -0.1 219,444 + -0.4 219,444 + +0.2 219,444 + +0.9 219,445 - +0.8 219,445 - +0.7 219,445 - -1.3 219,484 + +0.4 219,484 + -0.3 219,484 + -0.0 219,484 + -0.3 219,484 + +0.1 219,484 + +0.9 219,484 + +1.1 219,485 - -0.6 219,485 - -0.3 219,485 - -0.0 219,485 - +0.5 219,485 - -0.7 219,485 - +0.7 219,485 - -0.9 219,485 - +0.1
Or see this region's nucleotide sequence