Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06974

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06973 and MPMX19_06974 are separated by 197 nucleotidesMPMX19_06974 and MPMX19_06975 are separated by 150 nucleotides MPMX19_06973: MPMX19_06973 - 2-methylfumaryl-CoA isomerase, at 250,184 to 251,389 _06973 MPMX19_06974: MPMX19_06974 - 4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2, at 251,587 to 252,339 _06974 MPMX19_06975: MPMX19_06975 - HTH-type transcriptional regulator HdfR, at 252,490 to 253,449 _06975 Position (kb) 251 252 253Strain fitness (log2 ratio) -2 -1 0 1at 250.653 kb on + strand, within MPMX19_06973at 250.707 kb on + strand, within MPMX19_06973at 250.707 kb on + strand, within MPMX19_06973at 250.716 kb on + strand, within MPMX19_06973at 250.716 kb on + strand, within MPMX19_06973at 250.716 kb on + strand, within MPMX19_06973at 250.717 kb on - strand, within MPMX19_06973at 250.887 kb on + strand, within MPMX19_06973at 250.888 kb on - strand, within MPMX19_06973at 250.888 kb on - strand, within MPMX19_06973at 250.986 kb on + strand, within MPMX19_06973at 250.986 kb on + strand, within MPMX19_06973at 250.986 kb on + strand, within MPMX19_06973at 250.986 kb on + strand, within MPMX19_06973at 250.986 kb on + strand, within MPMX19_06973at 250.987 kb on - strand, within MPMX19_06973at 250.987 kb on - strand, within MPMX19_06973at 250.987 kb on - strand, within MPMX19_06973at 250.987 kb on - strand, within MPMX19_06973at 251.217 kb on + strand, within MPMX19_06973at 251.217 kb on + strand, within MPMX19_06973at 251.218 kb on - strand, within MPMX19_06973at 251.257 kb on - strand, within MPMX19_06973at 251.490 kb on + strandat 251.508 kb on + strandat 251.561 kb on + strandat 251.561 kb on + strandat 251.562 kb on - strandat 251.657 kb on + strandat 251.658 kb on - strandat 251.658 kb on - strandat 251.879 kb on + strand, within MPMX19_06974at 251.880 kb on - strand, within MPMX19_06974at 251.981 kb on + strand, within MPMX19_06974at 251.982 kb on - strand, within MPMX19_06974at 251.982 kb on - strand, within MPMX19_06974at 251.982 kb on - strand, within MPMX19_06974at 251.987 kb on + strand, within MPMX19_06974at 251.987 kb on + strand, within MPMX19_06974at 251.988 kb on - strand, within MPMX19_06974at 251.988 kb on - strand, within MPMX19_06974at 251.988 kb on - strand, within MPMX19_06974at 251.988 kb on - strand, within MPMX19_06974at 251.988 kb on - strand, within MPMX19_06974at 252.384 kb on + strandat 252.385 kb on - strandat 252.478 kb on - strandat 253.010 kb on + strand, within MPMX19_06975at 253.011 kb on - strand, within MPMX19_06975at 253.011 kb on - strand, within MPMX19_06975at 253.100 kb on + strand, within MPMX19_06975at 253.101 kb on - strand, within MPMX19_06975at 253.101 kb on - strand, within MPMX19_06975at 253.101 kb on - strand, within MPMX19_06975at 253.101 kb on - strand, within MPMX19_06975at 253.101 kb on - strand, within MPMX19_06975at 253.256 kb on + strand, within MPMX19_06975at 253.256 kb on + strand, within MPMX19_06975at 253.256 kb on + strand, within MPMX19_06975at 253.257 kb on - strand, within MPMX19_06975at 253.304 kb on + strand, within MPMX19_06975at 253.304 kb on + strand, within MPMX19_06975at 253.304 kb on + strand, within MPMX19_06975at 253.304 kb on + strand, within MPMX19_06975at 253.305 kb on - strand, within MPMX19_06975at 253.305 kb on - strand, within MPMX19_06975at 253.305 kb on - strand, within MPMX19_06975at 253.305 kb on - strand, within MPMX19_06975at 253.305 kb on - strand, within MPMX19_06975

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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250,653 + MPMX19_06973 0.39 -0.3
250,707 + MPMX19_06973 0.43 -1.1
250,707 + MPMX19_06973 0.43 +0.1
250,716 + MPMX19_06973 0.44 +0.4
250,716 + MPMX19_06973 0.44 -1.9
250,716 + MPMX19_06973 0.44 +1.5
250,717 - MPMX19_06973 0.44 -0.2
250,887 + MPMX19_06973 0.58 +0.3
250,888 - MPMX19_06973 0.58 -0.9
250,888 - MPMX19_06973 0.58 -0.1
250,986 + MPMX19_06973 0.67 +0.8
250,986 + MPMX19_06973 0.67 +0.5
250,986 + MPMX19_06973 0.67 +1.1
250,986 + MPMX19_06973 0.67 +0.4
250,986 + MPMX19_06973 0.67 -0.2
250,987 - MPMX19_06973 0.67 -0.2
250,987 - MPMX19_06973 0.67 +0.7
250,987 - MPMX19_06973 0.67 -0.7
250,987 - MPMX19_06973 0.67 +0.8
251,217 + MPMX19_06973 0.86 -0.5
251,217 + MPMX19_06973 0.86 +0.1
251,218 - MPMX19_06973 0.86 +1.4
251,257 - MPMX19_06973 0.89 -1.5
251,490 + +0.7
251,508 + -1.5
251,561 + +1.1
251,561 + +1.1
251,562 - -1.5
251,657 + -0.4
251,658 - -0.5
251,658 - -1.2
251,879 + MPMX19_06974 0.39 -0.5
251,880 - MPMX19_06974 0.39 +0.5
251,981 + MPMX19_06974 0.52 +0.5
251,982 - MPMX19_06974 0.52 +0.6
251,982 - MPMX19_06974 0.52 +0.1
251,982 - MPMX19_06974 0.52 +0.4
251,987 + MPMX19_06974 0.53 -0.8
251,987 + MPMX19_06974 0.53 +0.3
251,988 - MPMX19_06974 0.53 +1.6
251,988 - MPMX19_06974 0.53 -2.1
251,988 - MPMX19_06974 0.53 +0.7
251,988 - MPMX19_06974 0.53 +0.6
251,988 - MPMX19_06974 0.53 -1.0
252,384 + +0.1
252,385 - -0.0
252,478 - -1.5
253,010 + MPMX19_06975 0.54 -0.8
253,011 - MPMX19_06975 0.54 -0.7
253,011 - MPMX19_06975 0.54 -0.3
253,100 + MPMX19_06975 0.64 +1.3
253,101 - MPMX19_06975 0.64 -1.5
253,101 - MPMX19_06975 0.64 -0.5
253,101 - MPMX19_06975 0.64 -0.7
253,101 - MPMX19_06975 0.64 +0.3
253,101 - MPMX19_06975 0.64 -0.1
253,256 + MPMX19_06975 0.80 -0.3
253,256 + MPMX19_06975 0.80 -1.2
253,256 + MPMX19_06975 0.80 +0.1
253,257 - MPMX19_06975 0.80 -1.2
253,304 + MPMX19_06975 0.85 -1.5
253,304 + MPMX19_06975 0.85 -0.6
253,304 + MPMX19_06975 0.85 +0.4
253,304 + MPMX19_06975 0.85 -2.1
253,305 - MPMX19_06975 0.85 +0.1
253,305 - MPMX19_06975 0.85 -0.5
253,305 - MPMX19_06975 0.85 -1.2
253,305 - MPMX19_06975 0.85 -0.2
253,305 - MPMX19_06975 0.85 +0.1

Or see this region's nucleotide sequence