Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06864

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06862 and MPMX19_06863 overlap by 4 nucleotidesMPMX19_06863 and MPMX19_06864 are separated by 231 nucleotidesMPMX19_06864 and MPMX19_06865 are separated by 132 nucleotidesMPMX19_06865 and MPMX19_06866 are separated by 239 nucleotides MPMX19_06862: MPMX19_06862 - hypothetical protein, at 132,900 to 133,406 _06862 MPMX19_06863: MPMX19_06863 - hypothetical protein, at 133,403 to 133,882 _06863 MPMX19_06864: MPMX19_06864 - hypothetical protein, at 134,114 to 134,458 _06864 MPMX19_06865: MPMX19_06865 - Leucine-responsive regulatory protein, at 134,591 to 135,091 _06865 MPMX19_06866: MPMX19_06866 - HTH-type transcriptional regulator NimR, at 135,331 to 136,209 _06866 Position (kb) 134 135Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 133.261 kb on + strand, within MPMX19_06862at 133.261 kb on + strand, within MPMX19_06862at 133.261 kb on + strand, within MPMX19_06862at 133.261 kb on + strand, within MPMX19_06862at 133.262 kb on - strand, within MPMX19_06862at 133.262 kb on - strand, within MPMX19_06862at 133.410 kb on + strandat 133.410 kb on + strandat 133.410 kb on + strandat 133.437 kb on + strandat 133.437 kb on + strandat 133.650 kb on + strand, within MPMX19_06863at 133.650 kb on + strand, within MPMX19_06863at 133.650 kb on + strand, within MPMX19_06863at 133.650 kb on + strand, within MPMX19_06863at 133.650 kb on + strand, within MPMX19_06863at 133.725 kb on + strand, within MPMX19_06863at 133.725 kb on + strand, within MPMX19_06863at 133.726 kb on - strand, within MPMX19_06863at 133.836 kb on + strandat 133.837 kb on - strandat 133.927 kb on - strandat 134.144 kb on + strandat 134.144 kb on + strandat 134.144 kb on + strandat 134.144 kb on + strandat 134.144 kb on + strandat 134.144 kb on + strandat 134.145 kb on - strandat 134.145 kb on - strandat 134.145 kb on - strandat 134.273 kb on + strand, within MPMX19_06864at 134.273 kb on + strand, within MPMX19_06864at 134.273 kb on + strand, within MPMX19_06864at 134.273 kb on + strand, within MPMX19_06864at 134.273 kb on + strand, within MPMX19_06864at 134.273 kb on + strand, within MPMX19_06864at 134.273 kb on + strand, within MPMX19_06864at 134.273 kb on + strand, within MPMX19_06864at 134.274 kb on - strand, within MPMX19_06864at 134.274 kb on - strand, within MPMX19_06864at 134.274 kb on - strand, within MPMX19_06864at 134.274 kb on - strand, within MPMX19_06864at 134.274 kb on - strand, within MPMX19_06864at 134.274 kb on - strand, within MPMX19_06864at 134.274 kb on - strand, within MPMX19_06864at 134.274 kb on - strand, within MPMX19_06864at 134.587 kb on + strandat 134.587 kb on + strandat 134.588 kb on - strandat 134.588 kb on - strandat 134.606 kb on + strandat 134.606 kb on + strandat 134.606 kb on + strandat 134.606 kb on + strandat 134.607 kb on - strandat 134.607 kb on - strandat 134.607 kb on - strandat 134.641 kb on + strand, within MPMX19_06865at 134.641 kb on + strand, within MPMX19_06865at 134.643 kb on + strand, within MPMX19_06865at 134.644 kb on - strand, within MPMX19_06865at 134.644 kb on - strand, within MPMX19_06865at 134.693 kb on + strand, within MPMX19_06865at 134.877 kb on + strand, within MPMX19_06865at 134.877 kb on + strand, within MPMX19_06865at 134.877 kb on + strand, within MPMX19_06865at 134.877 kb on + strand, within MPMX19_06865at 134.878 kb on - strand, within MPMX19_06865at 134.878 kb on - strand, within MPMX19_06865at 134.878 kb on - strand, within MPMX19_06865at 134.878 kb on - strand, within MPMX19_06865at 134.878 kb on - strand, within MPMX19_06865at 134.878 kb on - strand, within MPMX19_06865at 135.107 kb on + strandat 135.107 kb on + strandat 135.108 kb on - strandat 135.108 kb on - strandat 135.108 kb on - strandat 135.170 kb on + strandat 135.170 kb on + strandat 135.170 kb on + strandat 135.171 kb on - strandat 135.171 kb on - strandat 135.171 kb on - strandat 135.171 kb on - strandat 135.171 kb on - strandat 135.171 kb on - strandat 135.226 kb on + strandat 135.269 kb on + strandat 135.270 kb on - strandat 135.270 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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133,261 + MPMX19_06862 0.71 +0.1
133,261 + MPMX19_06862 0.71 +0.5
133,261 + MPMX19_06862 0.71 +0.1
133,261 + MPMX19_06862 0.71 -0.5
133,262 - MPMX19_06862 0.71 -0.3
133,262 - MPMX19_06862 0.71 -0.2
133,410 + -0.3
133,410 + -0.5
133,410 + +0.2
133,437 + +0.6
133,437 + -1.4
133,650 + MPMX19_06863 0.51 -0.4
133,650 + MPMX19_06863 0.51 -1.2
133,650 + MPMX19_06863 0.51 -0.1
133,650 + MPMX19_06863 0.51 -1.5
133,650 + MPMX19_06863 0.51 -0.7
133,725 + MPMX19_06863 0.67 -0.9
133,725 + MPMX19_06863 0.67 +0.6
133,726 - MPMX19_06863 0.67 +1.1
133,836 + -1.5
133,837 - -0.5
133,927 - -0.5
134,144 + +0.5
134,144 + +0.4
134,144 + -1.7
134,144 + -0.9
134,144 + -1.2
134,144 + -1.1
134,145 - -0.2
134,145 - -0.1
134,145 - +0.7
134,273 + MPMX19_06864 0.46 -0.9
134,273 + MPMX19_06864 0.46 -1.2
134,273 + MPMX19_06864 0.46 +0.1
134,273 + MPMX19_06864 0.46 -0.7
134,273 + MPMX19_06864 0.46 -1.2
134,273 + MPMX19_06864 0.46 +0.0
134,273 + MPMX19_06864 0.46 -0.9
134,273 + MPMX19_06864 0.46 -1.4
134,274 - MPMX19_06864 0.46 -0.5
134,274 - MPMX19_06864 0.46 +0.1
134,274 - MPMX19_06864 0.46 -2.8
134,274 - MPMX19_06864 0.46 -1.6
134,274 - MPMX19_06864 0.46 -0.7
134,274 - MPMX19_06864 0.46 -1.2
134,274 - MPMX19_06864 0.46 +0.1
134,274 - MPMX19_06864 0.46 -1.2
134,587 + -0.1
134,587 + -1.2
134,588 - -1.0
134,588 - -1.0
134,606 + -1.2
134,606 + -0.1
134,606 + +0.7
134,606 + -0.1
134,607 - +2.7
134,607 - -0.8
134,607 - -0.5
134,641 + MPMX19_06865 0.10 -0.5
134,641 + MPMX19_06865 0.10 -2.1
134,643 + MPMX19_06865 0.10 -0.9
134,644 - MPMX19_06865 0.11 -1.1
134,644 - MPMX19_06865 0.11 +0.3
134,693 + MPMX19_06865 0.20 -1.2
134,877 + MPMX19_06865 0.57 +0.1
134,877 + MPMX19_06865 0.57 -1.2
134,877 + MPMX19_06865 0.57 -0.2
134,877 + MPMX19_06865 0.57 -2.4
134,878 - MPMX19_06865 0.57 -0.5
134,878 - MPMX19_06865 0.57 -0.5
134,878 - MPMX19_06865 0.57 -0.5
134,878 - MPMX19_06865 0.57 +0.7
134,878 - MPMX19_06865 0.57 -0.6
134,878 - MPMX19_06865 0.57 -0.3
135,107 + -1.0
135,107 + +1.4
135,108 - -0.3
135,108 - -0.1
135,108 - -0.5
135,170 + +1.4
135,170 + +1.1
135,170 + -0.2
135,171 - -1.6
135,171 - -1.9
135,171 - -0.5
135,171 - +0.1
135,171 - +0.5
135,171 - -1.7
135,226 + +0.3
135,269 + -0.8
135,270 - +0.8
135,270 - -1.2

Or see this region's nucleotide sequence